ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast17f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016356.1| Zea mays clone Contig189 mRNA sequence 129 7e-27
2gb|AY106192.1| Zea mays PCO072441 mRNA sequence 129 7e-27
3gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genom... 121 2e-24
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 121 2e-24
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
6dbj|AK062981.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
7gb|AY389672.1| Hyacinthus orientalis unknown mRNA 86 9e-14
8gb|AY389729.1| Hyacinthus orientalis At1g67350-like protein mRNA... 86 9e-14
9gb|AY389726.1| Hyacinthus orientalis unknown mRNA 78 2e-11
10gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 52 0.001
11gb|AC117673.18| Mus musculus chromosome 1, clone RP23-390I1, com... 46 0.077
12gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosom... 44 0.30
13ref|NG_000017.2| Homo sapiens protocadherin beta cluster (PCDHB@... 44 0.30
14gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer... 44 0.30
15emb|AL807806.6| Mouse DNA sequence from clone RP23-67K19 on chro... 44 0.30
16emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chro... 44 0.30
17gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosom... 44 0.30
18gb|BC066980.1| Homo sapiens chromosome 5 open reading frame 25, ... 44 0.30
19gb|BC037298.1| Homo sapiens chromosome 5 open reading frame 25, ... 44 0.30
20gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosom... 44 0.30
21gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, c... 44 0.30
22ref|NM_198567.1| Homo sapiens chromosome 5 open reading frame 25... 44 0.30
23emb|AL731860.8| Mouse DNA sequence from clone RP23-367H4 on chro... 44 0.30
24gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, compl... 44 0.30
25gb|AC116427.1| Homo sapiens chromosome 5 clone CTD-2316N20, comp... 44 0.30
26dbj|AK138696.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 44 0.30
27gb|AF366446.1|AF366446 Allium cepa clone AGF125 maintainer line ... 44 0.30
28gb|AC026400.4| Homo sapiens chromosome 5 clone CTB-173O12, compl... 44 0.30
29emb|BX005281.15| Mouse DNA sequence from clone RP23-268A11 on ch... 44 0.30
30gb|AC139493.3| Homo sapiens chromosome 5 clone RP11-844P9, compl... 44 0.30
31gb|AC025436.2|AC025436 Homo sapiens chromosome 5 clone CTC-429E1... 44 0.30
32gb|AC005754.1|AC005754 Homo sapiens chromosome 5, BAC clone 34j1... 44 0.30
33emb|AL731823.19| Mouse DNA sequence from clone RP23-60B2 on chro... 44 0.30
34gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, compl... 44 0.30
35emb|AL731814.13| Mouse DNA sequence from clone RP23-109J20 on ch... 44 0.30
36gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, com... 44 0.30
37gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome... 42 1.2
38gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 42 1.2
39emb|AL691442.32| Human DNA sequence from clone RP11-540D14 on ch... 42 1.2
40emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 42 1.2
41gb|AC116993.2| Homo sapiens chromosome 1 clone RP4-561P1, comple... 42 1.2
42dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
43gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 dapto... 42 1.2
44gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genom... 42 1.2
45gb|AC153896.10| Mus musculus 10 BAC RP23-114D16 (Roswell Park Ca... 42 1.2
46dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
47dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
48dbj|AK101257.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
49gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 4.7
50gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 4.7
51gb|AC149058.7| Mus musculus BAC clone RP23-338G5 from chromosome... 40 4.7
52gb|AC118245.17| Mus musculus chromosome 6, clone RP23-292C5, com... 40 4.7
53gb|AC122039.4| Mus musculus BAC clone RP24-432H3 from chromosome... 40 4.7
54gb|AC124574.4| Mus musculus BAC clone RP23-160J13 from 7, comple... 40 4.7
55ref|XM_759197.1| Theileria parva strain Muguga chromosome 4 hypo... 40 4.7
56emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.7
57emb|BX640429.1| Bordetella parapertussis strain 12822, complete ... 40 4.7
58emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 4.7
59emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.7
60emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 40 4.7
61gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, compl... 40 4.7
62gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Ca... 40 4.7
63gb|U24241.2|SCU24241 Sorangium cellulosum acyl-CoA dehydrogenase... 40 4.7
64gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence 40 4.7
65dbj|AK079280.1| Mus musculus adult male urinary bladder cDNA, RI... 40 4.7
66dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
67gb|AF263012.1|AF263011S2 Streptomyces griseus subsp. griseus mac... 40 4.7
68emb|AL732612.28| Mouse DNA sequence from clone RP23-31L20 on chr... 40 4.7
69dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
70gb|AC156791.1| Mus musculus BAC clone RP24-250L13 from 9, comple... 40 4.7
71gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 ... 40 4.7
72gb|AY772007.1| Nocardioides sp. JS614 putative PAPS reductase ge... 40 4.7 
>gb|BT016356.1| Zea mays clone Contig189 mRNA sequence
          Length = 636

 Score =  129 bits (65), Expect = 7e-27
 Identities = 83/89 (93%)
 Strand = Plus / Minus

                                                                       
Query: 268 gtggcgggcgaggaggtcgtcgtaggggtcgcggcggccggcggcctgtctgatctgggg 327
           ||||||||||| |||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct: 354 gtggcgggcgatgaggtcgtcgtaggggtcccgacggccggcggcctggctgatctgggg 295

                                        
Query: 328 gtcccaggagagctgggagttgaagcggt 356
            |||||||||||||| |||||||||||||
Sbjct: 294 atcccaggagagctgcgagttgaagcggt 266
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>gb|AY106192.1| Zea mays PCO072441 mRNA sequence
          Length = 708

 Score =  129 bits (65), Expect = 7e-27
 Identities = 83/89 (93%)
 Strand = Plus / Minus

                                                                       
Query: 268 gtggcgggcgaggaggtcgtcgtaggggtcgcggcggccggcggcctgtctgatctgggg 327
           ||||||||||| |||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct: 408 gtggcgggcgatgaggtcgtcgtaggggtcccgacggccggcggcctggctgatctgggg 349

                                        
Query: 328 gtcccaggagagctgggagttgaagcggt 356
            |||||||||||||| |||||||||||||
Sbjct: 348 atcccaggagagctgcgagttgaagcggt 320
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>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete
              sequence
          Length = 121849

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                          
Query: 268    gtggcgggcgaggaggtcgtcgtaggggtcgcggcggccggcggcctgtctgatctgggg 327
              |||||||  ||||| |||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 105036 gtggcggtggaggacgtcgtcgtaggggtcgcggcggccgggggcgtggctgatctgggg 105095

                                           
Query: 328    gtcccaggagagctgggagttgaagcggt 356
               ||||||||||||||||||||||||||||
Sbjct: 105096 atcccaggagagctgggagttgaagcggt 105124
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                            
Query: 268      gtggcgggcgaggaggtcgtcgtaggggtcgcggcggccggcggcctgtctgatctgggg 327
                |||||||  ||||| |||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 27073855 gtggcggtggaggacgtcgtcgtaggggtcgcggcggccgggggcgtggctgatctgggg 27073796

                                             
Query: 328      gtcccaggagagctgggagttgaagcggt 356
                 ||||||||||||||||||||||||||||
Sbjct: 27073795 atcccaggagagctgggagttgaagcggt 27073767



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 173      aaatgagttctccttattttg 193
                |||||||||||||||||||||
Sbjct: 35276111 aaatgagttctccttattttg 35276091
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                            
Query: 268      gtggcgggcgaggaggtcgtcgtaggggtcgcggcggccggcggcctgtctgatctgggg 327
                |||||||  ||||| |||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 27165178 gtggcggtggaggacgtcgtcgtaggggtcgcggcggccgggggcgtggctgatctgggg 27165119

                                             
Query: 328      gtcccaggagagctgggagttgaagcggt 356
                 ||||||||||||||||||||||||||||
Sbjct: 27165118 atcccaggagagctgggagttgaagcggt 27165090



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 173      aaatgagttctccttattttg 193
                |||||||||||||||||||||
Sbjct: 35366183 aaatgagttctccttattttg 35366163
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>dbj|AK062981.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-F03, full
           insert sequence
          Length = 583

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 268 gtggcgggcgaggaggtcgtcgtaggggtcgcggcggccggcggcctgtctgatctgggg 327
           |||||||  ||||| |||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 295 gtggcggtggaggacgtcgtcgtaggggtcgcggcggccgggggcgtggctgatctgggg 236

                                        
Query: 328 gtcccaggagagctgggagttgaagcggt 356
            ||||||||||||||||||||||||||||
Sbjct: 235 atcccaggagagctgggagttgaagcggt 207
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>gb|AY389672.1| Hyacinthus orientalis unknown mRNA
          Length = 621

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 274 ggcgaggaggtcgtcgtaggggtcgcggcggccggcggcctgtctgatctgggggtccca 333
           ||||||||||||||||||||||||||||||||| |   |||| |||||||| | ||||||
Sbjct: 329 ggcgaggaggtcgtcgtaggggtcgcggcggccaggaacctggctgatctgagcgtccca 270

                                  
Query: 334 ggagagctgggagttgaagcggt 356
           || |||||||| |||||| ||||
Sbjct: 269 ggcgagctgggcgttgaaccggt 247
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>gb|AY389729.1| Hyacinthus orientalis At1g67350-like protein mRNA, complete cds
          Length = 628

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 274 ggcgaggaggtcgtcgtaggggtcgcggcggccggcggcctgtctgatctgggggtccca 333
           ||||||||||||||||||||||||||||||||| |   |||| |||||||| | ||||||
Sbjct: 324 ggcgaggaggtcgtcgtaggggtcgcggcggccaggaacctggctgatctgagcgtccca 265

                                  
Query: 334 ggagagctgggagttgaagcggt 356
           || |||||||| |||||| ||||
Sbjct: 264 ggcgagctgggcgttgaaccggt 242
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>gb|AY389726.1| Hyacinthus orientalis unknown mRNA
          Length = 650

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                       
Query: 274 ggcgaggaggtcgtcgtaggggtcgcggcggccggcggcctgtctgatctgggggtccca 333
           ||||||||||||||||||||||||||||||||| |   |||| |||||||| | ||||||
Sbjct: 325 ggcgaggaggtcgtcgtaggggtcgcggcggccaggaacctggctgatctgagagtccca 266

                                  
Query: 334 ggagagctgggagttgaagcggt 356
           || |||||| | |||||| ||||
Sbjct: 265 ggcgagctgtgcgttgaaccggt 243
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 265    ggcgtggcgggcgaggaggtcgtcgt 290
              ||||||||||||||||||||||||||
Sbjct: 229513 ggcgtggcgggcgaggaggtcgtcgt 229488
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>gb|AC117673.18| Mus musculus chromosome 1, clone RP23-390I1, complete sequence
          Length = 182102

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 97    gcacatgaaccagctagggcagttcaa 123
             |||||||||||||| ||||||||||||
Sbjct: 66821 gcacatgaaccagcaagggcagttcaa 66847
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>gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosome 13, complete sequence
          Length = 191036

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 98     cacatgaaccagctagggcagttcaa 123
              ||||||||||||| ||||||||||||
Sbjct: 186484 cacatgaaccagcaagggcagttcaa 186509
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>ref|NG_000017.2| Homo sapiens protocadherin beta cluster (PCDHB@) on chromosome 5
          Length = 257923

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 18     aacaagacagaaaatcagcaga 39
              ||||||||||||||||||||||
Sbjct: 114312 aacaagacagaaaatcagcaga 114333
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>gb|AC166290.7| Mus musculus  BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 242055

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 98    cacatgaaccagctagggcagttcaa 123
             ||||||||||||| ||||||||||||
Sbjct: 58181 cacatgaaccagcaagggcagttcaa 58206
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>emb|AL807806.6| Mouse DNA sequence from clone RP23-67K19 on chromosome X, complete
             sequence
          Length = 128018

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 98    cacatgaaccagctagggcagttcaa 123
             ||||||||||||| ||||||||||||
Sbjct: 91437 cacatgaaccagcaagggcagttcaa 91412
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>emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chromosome 13, complete
              sequence
          Length = 220233

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 98     cacatgaaccagctagggcagttcaa 123
              ||||||||||||| ||||||||||||
Sbjct: 123087 cacatgaaccagcaagggcagttcaa 123062
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>gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosome 19, complete
             sequence
          Length = 160122

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 98    cacatgaaccagctagggcagttcaa 123
             ||||||||||||| ||||||||||||
Sbjct: 31057 cacatgaaccagcaagggcagttcaa 31082
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>gb|BC066980.1| Homo sapiens chromosome 5 open reading frame 25, mRNA (cDNA clone
           MGC:87612 IMAGE:4821958), complete cds
          Length = 1939

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 253 cggggcggggccggcgtggcgg 274
           ||||||||||||||||||||||
Sbjct: 4   cggggcggggccggcgtggcgg 25
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>gb|BC037298.1| Homo sapiens chromosome 5 open reading frame 25, mRNA (cDNA clone
           MGC:33586 IMAGE:4823991), complete cds
          Length = 3591

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 253 cggggcggggccggcgtggcgg 274
           ||||||||||||||||||||||
Sbjct: 12  cggggcggggccggcgtggcgg 33
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>gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosome 19, complete sequence
          Length = 146015

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 98     cacatgaaccagctagggcagttcaa 123
              ||||||||||||| ||||||||||||
Sbjct: 131851 cacatgaaccagcaagggcagttcaa 131826
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>gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, complete sequence
          Length = 212387

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 98     cacatgaaccagctagggcagttcaa 123
              ||||||||||||| ||||||||||||
Sbjct: 177334 cacatgaaccagcaagggcagttcaa 177359
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>ref|NM_198567.1| Homo sapiens chromosome 5 open reading frame 25 (C5orf25), mRNA
          Length = 3591

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 253 cggggcggggccggcgtggcgg 274
           ||||||||||||||||||||||
Sbjct: 12  cggggcggggccggcgtggcgg 33
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>emb|AL731860.8| Mouse DNA sequence from clone RP23-367H4 on chromosome 11 Contains the
             5' end of the AF424697 gene for DNA sequence AF424697
             (FLJ21950, KIAA0903-like) and a CpG island, complete
             sequence
          Length = 119258

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 98    cacatgaaccagctagggcagttcaa 123
             ||||||||||||| ||||||||||||
Sbjct: 95672 cacatgaaccagcaagggcagttcaa 95647
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>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence
          Length = 193714

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 98     cacatgaaccagctagggcagttcaa 123
              ||||||||||||| ||||||||||||
Sbjct: 136463 cacatgaaccagcaagggcagttcaa 136488
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>gb|AC116427.1| Homo sapiens chromosome 5 clone CTD-2316N20, complete sequence
          Length = 103938

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 253   cggggcggggccggcgtggcgg 274
             ||||||||||||||||||||||
Sbjct: 44516 cggggcggggccggcgtggcgg 44495
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>dbj|AK138696.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430014J21 product:unclassifiable, full
           insert sequence
          Length = 1916

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 98  cacatgaaccagctagggcagttcaa 123
           ||||||||||||| ||||||||||||
Sbjct: 783 cacatgaaccagcaagggcagttcaa 758
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>gb|AF366446.1|AF366446 Allium cepa clone AGF125 maintainer line sequence
          Length = 498

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 278 aggaggtcgtcgtaggggtcgcggcggccg 307
           ||||| ||||||||||||||||| ||||||
Sbjct: 226 aggagatcgtcgtaggggtcgcgacggccg 255
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>gb|AC026400.4| Homo sapiens chromosome 5 clone CTB-173O12, complete sequence
          Length = 118469

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 253   cggggcggggccggcgtggcgg 274
             ||||||||||||||||||||||
Sbjct: 46774 cggggcggggccggcgtggcgg 46753
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>emb|BX005281.15| Mouse DNA sequence from clone RP23-268A11 on chromosome X, complete
             sequence
          Length = 60173

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 98    cacatgaaccagctagggcagttcaa 123
             ||||||||||||| ||||||||||||
Sbjct: 11569 cacatgaaccagcaagggcagttcaa 11594
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>gb|AC139493.3| Homo sapiens chromosome 5 clone RP11-844P9, complete sequence
          Length = 173607

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 253   cggggcggggccggcgtggcgg 274
             ||||||||||||||||||||||
Sbjct: 86054 cggggcggggccggcgtggcgg 86075
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>gb|AC025436.2|AC025436 Homo sapiens chromosome 5 clone CTC-429E15, complete sequence
          Length = 184662

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 18     aacaagacagaaaatcagcaga 39
              ||||||||||||||||||||||
Sbjct: 160107 aacaagacagaaaatcagcaga 160128
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>gb|AC005754.1|AC005754 Homo sapiens chromosome 5, BAC clone 34j15 (LBNL H169), complete
             sequence
          Length = 125927

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 18    aacaagacagaaaatcagcaga 39
             ||||||||||||||||||||||
Sbjct: 32629 aacaagacagaaaatcagcaga 32608
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>emb|AL731823.19| Mouse DNA sequence from clone RP23-60B2 on chromosome X, complete
             sequence
          Length = 102565

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 98    cacatgaaccagctagggcagttcaa 123
             ||||||||||||| ||||||||||||
Sbjct: 23328 cacatgaaccagcaagggcagttcaa 23303
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>gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, complete sequence
          Length = 236246

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 98   cacatgaaccagctagggcagttcaa 123
            ||||||||||||| ||||||||||||
Sbjct: 1808 cacatgaaccagcaagggcagttcaa 1833
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>emb|AL731814.13| Mouse DNA sequence from clone RP23-109J20 on chromosome 2, complete
              sequence
          Length = 210821

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 98     cacatgaaccagctagggcagttcaa 123
              ||||||||||||| ||||||||||||
Sbjct: 142309 cacatgaaccagcaagggcagttcaa 142334
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>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence
          Length = 224088

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 98     cacatgaaccagctagggcagttcaa 123
              ||||||||||||| ||||||||||||
Sbjct: 145740 cacatgaaccagcaagggcagttcaa 145715
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>gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome 16, complete sequence
          Length = 191050

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 98    cacatgaaccagctagggcagttca 122
             ||||||||||||| |||||||||||
Sbjct: 63867 cacatgaaccagcaagggcagttca 63843
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
              sequence
          Length = 156606

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 173    aaatgagttctccttattttg 193
              |||||||||||||||||||||
Sbjct: 154872 aaatgagttctccttattttg 154852
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>emb|AL691442.32| Human DNA sequence from clone RP11-540D14 on chromosome 1 Contains the
             3' end of the ADAM15 gene for a disintegrin and
             metalloproteinase domain 15 (metargidin), the EFNA4 gene
             for ephrin-A4, the EFNA3 gene for ephrin-A3, the EFNA1
             gene for ephrin-A1, the gene for a novel protein
             (LOC55974), the DPM3 gene for dolichyl-phosphate
             mannosyltransferase polypeptide 3 and four CpG islands,
             complete sequence
          Length = 92095

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 253   cggggcggggccggcgtggcgggcg 277
             |||||||||||||||| ||||||||
Sbjct: 33754 cggggcggggccggcgcggcgggcg 33778
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    cgtggcgggcgaggaggtcgt 287
              |||||||||||||||||||||
Sbjct: 220778 cgtggcgggcgaggaggtcgt 220758



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    cgtggcgggcgaggaggtcgt 287
              |||||||||||||||||||||
Sbjct: 212952 cgtggcgggcgaggaggtcgt 212932
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>gb|AC116993.2| Homo sapiens chromosome 1 clone RP4-561P1, complete sequence
          Length = 101893

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 327   ggtcccaggagagctgggagt 347
             |||||||||||||||||||||
Sbjct: 95645 ggtcccaggagagctgggagt 95625
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 262      gccggcgtggcgggcgaggaggtcg 286
                ||||||| |||||||||||||||||
Sbjct: 28525262 gccggcgaggcgggcgaggaggtcg 28525286
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>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene
              cluster, partial sequence
          Length = 127559

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 243    acgaggaggacggggcggggc 263
              |||||||||||||||||||||
Sbjct: 127346 acgaggaggacggggcggggc 127326
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>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete
             sequence
          Length = 116443

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 173   aaatgagttctccttattttg 193
             |||||||||||||||||||||
Sbjct: 92343 aaatgagttctccttattttg 92363
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>gb|AC153896.10| Mus musculus 10 BAC RP23-114D16 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 206003

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 98    cacatgaaccagctagggcagttca 122
             ||||||||||||| |||||||||||
Sbjct: 76054 cacatgaaccagcaagggcagttca 76078
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>dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0532H03
          Length = 166128

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 262    gccggcgtggcgggcgaggaggtcg 286
              ||||||| |||||||||||||||||
Sbjct: 132295 gccggcgaggcgggcgaggaggtcg 132319
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>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0550B04
          Length = 150131

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 262   gccggcgtggcgggcgaggaggtcg 286
             ||||||| |||||||||||||||||
Sbjct: 16740 gccggcgaggcgggcgaggaggtcg 16764
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>dbj|AK101257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032G23, full
           insert sequence
          Length = 2673

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 262 gccggcgtggcgggcgaggaggtcg 286
           ||||||| |||||||||||||||||
Sbjct: 111 gccggcgaggcgggcgaggaggtcg 87
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 289    gtaggggtcgcggcggccggcggc 312
              ||||||||||||||||||| ||||
Sbjct: 546159 gtaggggtcgcggcggccgccggc 546182
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 289     gtaggggtcgcggcggccggcggc 312
               ||||||||||||||||||| ||||
Sbjct: 3228930 gtaggggtcgcggcggccgccggc 3228907
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>gb|AC149058.7| Mus musculus BAC clone RP23-338G5 from chromosome 7, complete sequence
          Length = 219369

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    gaggaggacggggcggggcc 264
              ||||||||||||||||||||
Sbjct: 171943 gaggaggacggggcggggcc 171962
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>gb|AC118245.17| Mus musculus chromosome 6, clone RP23-292C5, complete sequence
          Length = 230218

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 100    catgaaccagctagggcagttcaa 123
              ||||||||||| ||||||||||||
Sbjct: 221300 catgaaccagcgagggcagttcaa 221323
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>gb|AC122039.4| Mus musculus BAC clone RP24-432H3 from chromosome 6, complete sequence
          Length = 169274

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 100    catgaaccagctagggcagttcaa 123
              ||||||||||| ||||||||||||
Sbjct: 149340 catgaaccagcgagggcagttcaa 149317
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>gb|AC124574.4| Mus musculus BAC clone RP23-160J13 from 7, complete sequence
          Length = 176188

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    gaggaggacggggcggggcc 264
              ||||||||||||||||||||
Sbjct: 150173 gaggaggacggggcggggcc 150154
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>ref|XM_759197.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0654) partial mRNA
          Length = 1776

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 caaggataaaatcgatgaaa 140
           ||||||||||||||||||||
Sbjct: 843 caaggataaaatcgatgaaa 862
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    ggccggcgtggcgggcgagg 280
              ||||||||||||||||||||
Sbjct: 309652 ggccggcgtggcgggcgagg 309671
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>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14
          Length = 344321

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   ggccggcgtggcgggcgagg 280
             ||||||||||||||||||||
Sbjct: 68952 ggccggcgtggcgggcgagg 68971
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    ggccggcgtggcgggcgagg 280
              ||||||||||||||||||||
Sbjct: 147046 ggccggcgtggcgggcgagg 147065
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 289     gtaggggtcgcggcggccggcggc 312
               ||||||||||||||||||| ||||
Sbjct: 2958795 gtaggggtcgcggcggccgccggc 2958772
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   ggcgaggaggtcgtcgtagg 293
             ||||||||||||||||||||
Sbjct: 50004 ggcgaggaggtcgtcgtagg 49985
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>gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, complete sequence
          Length = 212426

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 244    cgaggaggacggggcggggccggc 267
              |||||||| |||||||||||||||
Sbjct: 100186 cgaggagggcggggcggggccggc 100209
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>gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 193626

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   atgagttctccttattttgc 194
             ||||||||||||||||||||
Sbjct: 44823 atgagttctccttattttgc 44804
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>gb|U24241.2|SCU24241 Sorangium cellulosum acyl-CoA dehydrogenase (sorE),
             beta-hydroxybutyryl-CoA dehydrogenase (sorD), putative
             methoxymalonyl-CoA synthase (sorC), reductase (sorR),
             soraphen polyketide synthase A (sorA), soraphen polyketide
             synthase B (sorB), O-methyltransferase (sorM),
             beta-mannanase, and xylanse-arabinofuranosidase
             bifunctional enzyme genes, complete cds; and unknown genes
          Length = 67523

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tggcgggcgaggaggtcgtc 288
             ||||||||||||||||||||
Sbjct: 13674 tggcgggcgaggaggtcgtc 13655
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>gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence
          Length = 191204

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   ggaagggaatgtaatcacag 161
             ||||||||||||||||||||
Sbjct: 64352 ggaagggaatgtaatcacag 64371
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>dbj|AK079280.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530080P11 product:RIKEN cDNA
           A930033L17 gene, full insert sequence
          Length = 1470

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 gtggcgggcgaggaggtcgt 287
           ||||||||||||||||||||
Sbjct: 244 gtggcgggcgaggaggtcgt 225
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 173      aaatgagttctccttatttt 192
                ||||||||||||||||||||
Sbjct: 22402955 aaatgagttctccttatttt 22402936
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>gb|AF263012.1|AF263011S2 Streptomyces griseus subsp. griseus macrotetrolide biosynthesis gene
            cluster, downstream region
          Length = 10029

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  tcgcggcggccggcggcctg 315
            ||||||||||||||||||||
Sbjct: 7994 tcgcggcggccggcggcctg 7975
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>emb|AL732612.28| Mouse DNA sequence from clone RP23-31L20 on chromosome 11, complete
             sequence
          Length = 145244

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 8     agcttcatggaacaagacagaaaa 31
             ||||||||||||||||| ||||||
Sbjct: 56331 agcttcatggaacaagatagaaaa 56308
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>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1144B06
          Length = 133689

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   aaatgagttctccttatttt 192
             ||||||||||||||||||||
Sbjct: 99938 aaatgagttctccttatttt 99919
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>gb|AC156791.1| Mus musculus BAC clone RP24-250L13 from 9, complete sequence
          Length = 165073

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     ggaacaagacagaaaatcag 35
              ||||||||||||||||||||
Sbjct: 150012 ggaacaagacagaaaatcag 150031
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>gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 (nashor2) mRNA, complete
           cds
          Length = 1346

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 31/34 (91%), Gaps = 3/34 (8%)
 Strand = Plus / Minus

                                             
Query: 253 cggggcggggccgg---cgtggcgggcgaggagg 283
           ||||||||||||||   |||||||||||||||||
Sbjct: 509 cggggcggggccggggacgtggcgggcgaggagg 476
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>gb|AY772007.1| Nocardioides sp. JS614 putative PAPS reductase gene, partial cds;
             putative argininosuccinate lyase, putative
             1-aminocyclopropane-1-carboxylate deaminase, putative
             adenylosuccinate lyase, putative phosphosulfolactate
             synthase, putative oxidoreductase/dehydrogenase, putative
             short-chain dehydrogenase, putative acyl-CoA transferase,
             putative acyl-CoA synthetase, epoxyalkane: coenzyme M
             transferase (etnE), probable alkene monooxygenase beta
             subunit (etnA), probable alkene monooxygenase effector
             (etnB), probable alkene monooxygenase alpha subunit
             (etnC), probable alkene monooxygenase reductase,
             hypothetical proteins, putative dimethylsulfoxide
             reductase, hypothetical protein, putative TraA conjugation
             protein, hypothetical protein, putative ParB partitioning
             protein, and hypothetical proteins genes, complete cds;
             putative DNA integrase/recombinase gene, partial cds; and
             unknown gene
          Length = 34814

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   gtcgcggcggccggcggcct 314
             ||||||||||||||||||||
Sbjct: 26958 gtcgcggcggccggcggcct 26977


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,239,191
Number of Sequences: 3902068
Number of extensions: 3239191
Number of successful extensions: 80622
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79947
Number of HSP's gapped (non-prelim): 675
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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