ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast17c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_668757.1| Plasmodium berghei strain ANKA transporter (PB0... 42 1.1
2emb|BX897684.8| Zebrafish DNA sequence from clone CH211-107A4 in... 40 4.3
3gb|AC009241.4| Homo sapiens BAC clone RP11-542O24 from 2, comple... 40 4.3
4gb|AF262041.1|T32B20 Arabidopsis thaliana BAC T32B20 40 4.3
5emb|AL590633.9| Mouse DNA sequence from clone RP23-211O23 on chr... 40 4.3
6emb|AL137226.3|CNS01DWI Human chromosome 14 DNA sequence BAC R-3... 40 4.3
7emb|AL669938.9| Mouse DNA sequence from clone RP23-264N2 on chro... 40 4.3

>ref|XM_668757.1| Plasmodium berghei strain ANKA transporter (PB000569.02.0),
          partial mRNA
          Length = 1515

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 ataatcatgtgcatgatgata 58
          |||||||||||||||||||||
Sbjct: 11 ataatcatgtgcatgatgata 31



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>emb|BX897684.8| Zebrafish DNA sequence from clone CH211-107A4 in linkage group 7,
              complete sequence
          Length = 147920

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 257    aaggactaaacgctatcataatgcaatt 284
              ||||||||||||||| |||||| |||||
Sbjct: 125678 aaggactaaacgctaacataatacaatt 125705



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>gb|AC009241.4| Homo sapiens BAC clone RP11-542O24 from 2, complete sequence
          Length = 171923

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    catacagatattcagttgtc 245
              ||||||||||||||||||||
Sbjct: 125399 catacagatattcagttgtc 125418



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>gb|AF262041.1|T32B20 Arabidopsis thaliana BAC T32B20
          Length = 81877

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 205  gctcagctgtggcactgtgaccat 228
            ||||| ||||||||||||||||||
Sbjct: 3613 gctcaactgtggcactgtgaccat 3590



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>emb|AL590633.9| Mouse DNA sequence from clone RP23-211O23 on chromosome X, complete
             sequence
          Length = 179289

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 255   tcaaggactaaacgctatcataat 278
             ||||||||||||||| ||||||||
Sbjct: 52297 tcaaggactaaacgcaatcataat 52274



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>emb|AL137226.3|CNS01DWI Human chromosome 14 DNA sequence BAC R-356A6 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 208391

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     aaccagaaatcacatatttc 95
              ||||||||||||||||||||
Sbjct: 123958 aaccagaaatcacatatttc 123939



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>emb|AL669938.9| Mouse DNA sequence from clone RP23-264N2 on chromosome 4, complete
             sequence
          Length = 199071

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    catacaaccaatgaaccaga 82
             ||||||||||||||||||||
Sbjct: 60434 catacaaccaatgaaccaga 60415


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,270,163
Number of Sequences: 3902068
Number of extensions: 2270163
Number of successful extensions: 37201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37189
Number of HSP's gapped (non-prelim): 12
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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