| Clone Name | rbast17b03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX571771.5| Zebrafish DNA sequence from clone CH211-160F8 in linkage group 21, complete sequence Length = 162245 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 ataattacttcaatgcacaaca 216 |||||||||||||||||||||| Sbjct: 70951 ataattacttcaatgcacaaca 70972
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 aaaataatgcattttcactggc 245 |||||||||||||||||||||| Sbjct: 6273026 aaaataatgcattttcactggc 6273047
>gb|AC018693.8| Homo sapiens BAC clone RP11-555N21 from 2, complete sequence Length = 164125 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 170 tatcatggagagtacatatataagaa 195 ||||||||||||||||||| |||||| Sbjct: 37436 tatcatggagagtacatatttaagaa 37411
>emb|BX640583.7| Zebrafish DNA sequence from clone CH211-186C22 in linkage group 21, complete sequence Length = 130141 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 ataattacttcaatgcacaaca 216 |||||||||||||||||||||| Sbjct: 62150 ataattacttcaatgcacaaca 62129
>gb|AC092833.4| Homo sapiens BAC clone RP13-490C19 from 2, complete sequence Length = 143506 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 170 tatcatggagagtacatatataagaa 195 ||||||||||||||||||| |||||| Sbjct: 43203 tatcatggagagtacatatttaagaa 43178
>dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1267_F10 Length = 162669 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 aaaataatgcattttcactggc 245 |||||||||||||||||||||| Sbjct: 70413 aaaataatgcattttcactggc 70434
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 aaataatgcattttcactggc 245 ||||||||||||||||||||| Sbjct: 367761 aaataatgcattttcactggc 367781
>gb|AC107224.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0009C08, complete sequence Length = 137033 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 aaataatgcattttcactggc 245 ||||||||||||||||||||| Sbjct: 95289 aaataatgcattttcactggc 95309
>emb|CR735124.10| Zebrafish DNA sequence from clone CH211-186G12 in linkage group 21, complete sequence Length = 149968 Score = 42.1 bits (21), Expect = 0.93 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 ataatgtaaaagacagacagtttag 95 ||||||||||| ||||||||||||| Sbjct: 20069 ataatgtaaaatacagacagtttag 20045
>gb|AC114322.2| Homo sapiens chromosome 5 clone RP11-74D3, complete sequence Length = 133348 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 acaacaatgttctaaaataat 231 ||||||||||||||||||||| Sbjct: 27026 acaacaatgttctaaaataat 27046
>gb|AC114945.2| Homo sapiens chromosome 5 clone CTD-2604I2, complete sequence Length = 129575 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 acaacaatgttctaaaataat 231 ||||||||||||||||||||| Sbjct: 9175 acaacaatgttctaaaataat 9155
>gb|AC074133.5| Homo sapiens chromosome 5 clone CTD-2278B20, complete sequence Length = 75852 Score = 42.1 bits (21), Expect = 0.93 Identities = 24/25 (96%) Strand = Plus / Minus Query: 185 atatataagaataattacttcaatg 209 |||||||||||||||||||| |||| Sbjct: 35167 atatataagaataattactttaatg 35143
>dbj|AK146569.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920028E17 product:integrin alpha M, full insert sequence Length = 3753 Score = 42.1 bits (21), Expect = 0.93 Identities = 24/25 (96%) Strand = Plus / Minus Query: 246 tctttgtttatctttgggagccaaa 270 ||||||||| ||||||||||||||| Sbjct: 3347 tctttgtttgtctttgggagccaaa 3323
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 aaataatgcattttcactggc 245 ||||||||||||||||||||| Sbjct: 367759 aaataatgcattttcactggc 367779
>emb|BX247875.6| Zebrafish DNA sequence from clone CH211-201N18, complete sequence Length = 213093 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 acaatgttctaaaataatgca 234 ||||||||||||||||||||| Sbjct: 192329 acaatgttctaaaataatgca 192309
>gb|AC124566.5| Mus musculus BAC clone RP23-144N15 from 7, complete sequence Length = 181231 Score = 42.1 bits (21), Expect = 0.93 Identities = 24/25 (96%) Strand = Plus / Plus Query: 246 tctttgtttatctttgggagccaaa 270 ||||||||| ||||||||||||||| Sbjct: 161349 tctttgtttgtctttgggagccaaa 161373
>gb|AC150393.2| Branchiostoma floridae clone CH302-13E12, complete sequence Length = 207808 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 ttactgcagtaagttttgtcccca 43 |||||||||| ||||||||||||| Sbjct: 93657 ttactgcagtcagttttgtcccca 93634
>gb|AY692077.1| Plantago lanceolata 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 25S ribosomal RNA gene, partial sequence Length = 706 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggagccaaaggggcaacga 280 |||||||||||||||||||| Sbjct: 237 gggagccaaaggggcaacga 218
>gb|AC162693.5| Mus musculus chromosome 15, clone RP24-89G21, complete sequence Length = 159813 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 ttgtatcatggagagtacatatat 190 |||||| ||||||||||||||||| Sbjct: 140771 ttgtataatggagagtacatatat 140748
>gb|AC026866.8| Homo sapiens BAC clone RP11-420P20 from 7, complete sequence Length = 179438 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 atatataagaataattactt 204 |||||||||||||||||||| Sbjct: 8360 atatataagaataattactt 8341
>gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complete sequence Length = 185953 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tacatatataagaataatta 201 |||||||||||||||||||| Sbjct: 370 tacatatataagaataatta 389
>gb|AC004009.1| Homo sapiens PAC clone RP5-1103I5 from 7, complete sequence Length = 80765 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 gcacaacaatgttctaaaataatg 232 |||||||||| ||||||||||||| Sbjct: 32085 gcacaacaatcttctaaaataatg 32062
>gb|AC140949.1| Pan troglodytes BAC clone RP43-168N2 from 7, complete sequence Length = 193777 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 atatataagaataattactt 204 |||||||||||||||||||| Sbjct: 131763 atatataagaataattactt 131744
>gb|AC021028.12| Homo sapiens chromosome 10 clone RP11-137H2, complete sequence Length = 161803 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 catatataagaataattact 203 |||||||||||||||||||| Sbjct: 124390 catatataagaataattact 124371
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aaagaataatgtaaaagaca 85 |||||||||||||||||||| Sbjct: 6318 aaagaataatgtaaaagaca 6299
>gb|AY101899.1| Plantago leiopetala 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequences; and 28S ribosomal RNA gene, partial sequence Length = 777 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggagccaaaggggcaacga 280 |||||||||||||||||||| Sbjct: 296 gggagccaaaggggcaacga 277
>gb|AY101898.1| Plantago lanceolata 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequences; and 28S ribosomal RNA gene, partial sequence Length = 753 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggagccaaaggggcaacga 280 |||||||||||||||||||| Sbjct: 283 gggagccaaaggggcaacga 264
>emb|AL691481.15| Mouse DNA sequence from clone RP23-173C3 on chromosome 4 Contains a non-neuron enolase 1 alpha (Eno1) pseudogene, a mitochondrial H+ transporting ATP synthase F0 complex subunit d (Atp5h) pseudogene and a CpG island, complete sequence Length = 230127 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aaagaataatgtaaaagaca 85 |||||||||||||||||||| Sbjct: 166514 aaagaataatgtaaaagaca 166533
>ref|NM_204810.1| Gallus gallus leukocyte cell derived chemotaxin 1 (LECT1), mRNA Length = 2751 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ctctttgtttatctttggga 264 |||||||||||||||||||| Sbjct: 634 ctctttgtttatctttggga 615
>dbj|AK140902.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130064H22 product:unclassifiable, full insert sequence Length = 4637 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tacatatataagaataatta 201 |||||||||||||||||||| Sbjct: 2585 tacatatataagaataatta 2604
>dbj|AK157660.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830230E13 product:unclassifiable, full insert sequence Length = 2334 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aaagaataatgtaaaagaca 85 |||||||||||||||||||| Sbjct: 1960 aaagaataatgtaaaagaca 1941
>gb|AC158999.2| Mus musculus BAC clone RP24-201N16 from chromosome 9, complete sequence Length = 169860 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 tgaaagaataatgtaaaaga 83 |||||||||||||||||||| Sbjct: 144920 tgaaagaataatgtaaaaga 144901
>gb|AF313036.1|AF313036 Plantago lanceolata 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 735 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggagccaaaggggcaacga 280 |||||||||||||||||||| Sbjct: 301 gggagccaaaggggcaacga 282
>ref|XM_624083.1| PREDICTED: Apis mellifera similar to ENSANGP00000010559 (LOC551695), mRNA Length = 792 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tgtgaaagaataatgtaaaa 81 |||||||||||||||||||| Sbjct: 53 tgtgaaagaataatgtaaaa 34
>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence Length = 203106 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 ttgtatcatggagagtacatatat 190 |||||| ||||||||||||||||| Sbjct: 155863 ttgtataatggagagtacatatat 155886
>gb|AC009376.7| Drosophila melanogaster 3 BAC RPCI98-1D4 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 183948 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ccaaaaatactcggtgtttt 120 |||||||||||||||||||| Sbjct: 47843 ccaaaaatactcggtgtttt 47824
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ataagaataattacttcaat 208 |||||||||||||||||||| Sbjct: 317215 ataagaataattacttcaat 317234
>emb|AJ548985.1|PLE548985 Plantago leiopetala partial 18S rRNA gene, 5.8S rRNA gene, partial 28S rRNA gene, ITS1 and ITS2, specimen voucher Hoggard RK #418 Length = 772 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggagccaaaggggcaacga 280 |||||||||||||||||||| Sbjct: 295 gggagccaaaggggcaacga 276
>emb|AJ548984.1|PLA548984 Plantago lanceolata partial 18S rRNA gene, 5.8S rRNA gene, partial 28S rRNA gene, ITS1 and ITS2, specimen voucher Hoggard RK #414 Length = 789 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gggagccaaaggggcaacga 280 |||||||||||||||||||| Sbjct: 299 gggagccaaaggggcaacga 280
>gb|AF027380.1|AF027380 Gallus gallus chondromodulin-I precursor (ChM-I) mRNA, complete cds Length = 2749 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ctctttgtttatctttggga 264 |||||||||||||||||||| Sbjct: 633 ctctttgtttatctttggga 614
>gb|AF138280.1|AF138280 Gallus gallus chondromodulin-I mRNA, complete cds Length = 2751 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ctctttgtttatctttggga 264 |||||||||||||||||||| Sbjct: 634 ctctttgtttatctttggga 615
>gb|AE003516.4| Drosophila melanogaster chromosome 3L, section 69 of 83 of the complete sequence Length = 305312 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccaaaaatactcggtgtttt 120 |||||||||||||||||||| Sbjct: 123711 ccaaaaatactcggtgtttt 123730
>emb|AL928587.7| Mouse DNA sequence from clone RP23-282M14 on chromosome 2, complete sequence Length = 218618 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 tacatatataagaataatta 201 |||||||||||||||||||| Sbjct: 100459 tacatatataagaataatta 100440 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,326,815 Number of Sequences: 3902068 Number of extensions: 3326815 Number of successful extensions: 67658 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67525 Number of HSP's gapped (non-prelim): 133 length of query: 283 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 261 effective length of database: 17,147,199,772 effective search space: 4475419140492 effective search space used: 4475419140492 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)