ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast17b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_384504.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 1.5
2emb|BX001038.6| Zebrafish DNA sequence from clone CH211-12M10 in... 40 1.5
3gb|AE017308.1| Mycoplasma mobile 163K complete genome 38 6.1
4gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome... 38 6.1
5ref|XM_417184.1| PREDICTED: Gallus gallus similar to putative ca... 38 6.1
6gb|AC125359.4| Mus musculus BAC clone RP23-102I17 from chromosom... 38 6.1
7gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, compl... 38 6.1
8gb|AC079178.20| Homo sapiens Xp BAC RP11-702C7 (Roswell Park Can... 38 6.1
9dbj|AK157245.1| Mus musculus activated spleen cDNA, RIKEN full-l... 38 6.1
10dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.1
11gb|AC087073.6| Homo sapiens BAC clone RP11-752H12 from 2, comple... 38 6.1
12gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complet... 38 6.1
13gb|AC106817.2| Homo sapiens chromosome 5 clone RP11-636F7, compl... 38 6.1
14emb|AL954143.9| Zebrafish DNA sequence from clone CH211-206A7 in... 38 6.1
15gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.1
16emb|CR383665.9| Zebrafish DNA sequence from clone DKEY-3G23 in l... 38 6.1
17emb|AL808143.5| Mouse DNA sequence from clone RP23-384K11 on chr... 38 6.1
18emb|X04964.1|MMIL1BG Murine interleukin 1-beta gene 38 6.1

>ref|XM_384504.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04328.1)
            partial mRNA
          Length = 3987

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   ccccagctaatagagttctt 96
            ||||||||||||||||||||
Sbjct: 1370 ccccagctaatagagttctt 1351



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>emb|BX001038.6| Zebrafish DNA sequence from clone CH211-12M10 in linkage group 17,
              complete sequence
          Length = 180659

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gagtgtagatttcaaaattg 20
              ||||||||||||||||||||
Sbjct: 118460 gagtgtagatttcaaaattg 118479



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>gb|AE017308.1| Mycoplasma mobile 163K complete genome
          Length = 777079

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      gatttcaaaattgagatat 26
              |||||||||||||||||||
Sbjct: 530230 gatttcaaaattgagatat 530248



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>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone OSJNBb0003F09,
              complete sequence
          Length = 159600

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      gatttcaaaattgagatat 26
              |||||||||||||||||||
Sbjct: 143527 gatttcaaaattgagatat 143545



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>ref|XM_417184.1| PREDICTED: Gallus gallus similar to putative capacitative calcium
            entry channel (LOC418989), mRNA
          Length = 2694

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 53   aaatatcaccatgaacttg 71
            |||||||||||||||||||
Sbjct: 1899 aaatatcaccatgaacttg 1881



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>gb|AC125359.4| Mus musculus BAC clone RP23-102I17 from chromosome 14, complete
             sequence
          Length = 192163

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     gagtgtagatttcaaaatt 19
             |||||||||||||||||||
Sbjct: 97895 gagtgtagatttcaaaatt 97877



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>gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, complete sequence
          Length = 126394

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      tgtagatttcaaaattgag 22
              |||||||||||||||||||
Sbjct: 125983 tgtagatttcaaaattgag 126001



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>gb|AC079178.20| Homo sapiens Xp BAC RP11-702C7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 114665

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 46     gttacacaaatatcaccat 64
              |||||||||||||||||||
Sbjct: 102227 gttacacaaatatcaccat 102245



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>dbj|AK157245.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830208B07 product:interleukin 1 beta,
            full insert sequence
          Length = 3738

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 77   ccccagctaatagagttct 95
            |||||||||||||||||||
Sbjct: 1823 ccccagctaatagagttct 1841



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 8        gatttcaaaattgagatat 26
                |||||||||||||||||||
Sbjct: 27021141 gatttcaaaattgagatat 27021159



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>gb|AC087073.6| Homo sapiens BAC clone RP11-752H12 from 2, complete sequence
          Length = 141441

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    tttcaaaattgagatatgt 28
             |||||||||||||||||||
Sbjct: 34743 tttcaaaattgagatatgt 34725



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>gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complete sequence
          Length = 181720

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 15    aaattgagatatgtactgtgatt 37
             ||||||||||||||| |||||||
Sbjct: 54443 aaattgagatatgtattgtgatt 54421



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>gb|AC106817.2| Homo sapiens chromosome 5 clone RP11-636F7, complete sequence
          Length = 169232

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 4      tgtagatttcaaaattgag 22
              |||||||||||||||||||
Sbjct: 159939 tgtagatttcaaaattgag 159921



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>emb|AL954143.9| Zebrafish DNA sequence from clone CH211-206A7 in linkage group 19,
            complete sequence
          Length = 168515

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   tcagtaagcgcacacatcg 117
            |||||||||||||||||||
Sbjct: 8341 tcagtaagcgcacacatcg 8359



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 8        gatttcaaaattgagatat 26
                |||||||||||||||||||
Sbjct: 26946730 gatttcaaaattgagatat 26946748



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>emb|CR383665.9| Zebrafish DNA sequence from clone DKEY-3G23 in linkage group 14,
             complete sequence
          Length = 120923

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    aaattgagatatgtactgt 33
             |||||||||||||||||||
Sbjct: 18457 aaattgagatatgtactgt 18439



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>emb|AL808143.5| Mouse DNA sequence from clone RP23-384K11 on chromosome 2, complete
             sequence
          Length = 202474

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 77    ccccagctaatagagttct 95
             |||||||||||||||||||
Sbjct: 14820 ccccagctaatagagttct 14802



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>emb|X04964.1|MMIL1BG Murine interleukin 1-beta gene
          Length = 7100

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 77   ccccagctaatagagttct 95
            |||||||||||||||||||
Sbjct: 5131 ccccagctaatagagttct 5149


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,128,882
Number of Sequences: 3902068
Number of extensions: 1128882
Number of successful extensions: 75300
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75228
Number of HSP's gapped (non-prelim): 72
length of query: 130
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 109
effective length of database: 17,151,101,840
effective search space: 1869470100560
effective search space used: 1869470100560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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