ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast17b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
2dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
3dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
4dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
5emb|AL080273.10|HSBA259P1 Human DNA sequence from clone RP11-259... 42 1.0
6gb|AC012301.5|AC012301 Homo sapiens chromosome 18, clone RP11-38... 42 1.0
7ref|XM_384504.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 4.1
8emb|AL121886.22|HS1028D15 Human DNA sequence from clone RP5-1028... 40 4.1
9gb|CP000183.1| Drosophila melanogaster genomic scaffold 21100002... 40 4.1
10dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 4.1

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 225      tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 284
                |||||||||||||| |  ||||| ||||||||||| ||||| || ||||| ||||| |||
Sbjct: 35855553 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 35855612

                     
Query: 285      ttggt 289
                |||||
Sbjct: 35855613 ttggt 35855617



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>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 225   tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 284
             |||||||||||||| |  ||||| ||||||||||| ||||| || ||||| ||||| |||
Sbjct: 46099 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 46158

                  
Query: 285   ttggt 289
             |||||
Sbjct: 46159 ttggt 46163



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>dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116E04, full
            insert sequence
          Length = 1547

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 225  tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 284
            |||||||||||||| |  ||||| ||||||||||| ||||| || ||||| ||||| |||
Sbjct: 1292 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 1233

                 
Query: 285  ttggt 289
            |||||
Sbjct: 1232 ttggt 1228



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>dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full
            insert sequence
          Length = 1562

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 225  tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 284
            |||||||||||||| |  ||||| ||||||||||| ||||| || ||||| ||||| |||
Sbjct: 1307 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 1248

                 
Query: 285  ttggt 289
            |||||
Sbjct: 1247 ttggt 1243



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>emb|AL080273.10|HSBA259P1 Human DNA sequence from clone RP11-259P1 on chromosome 22 Contains
             STSs, GSSs, genomic markers D22S1154, D22S310 and D22S690
             and a gt repeat polymorphism, complete sequence
          Length = 48084

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 258   tgcgcctgctgctgtgcattg 278
             |||||||||||||||||||||
Sbjct: 15106 tgcgcctgctgctgtgcattg 15086



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>gb|AC012301.5|AC012301 Homo sapiens chromosome 18, clone RP11-383D22, complete sequence
          Length = 211466

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   aatgggaaccaactttacact 142
             |||||||||||||||||||||
Sbjct: 62329 aatgggaaccaactttacact 62309



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>ref|XM_384504.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04328.1)
            partial mRNA
          Length = 3987

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   ccccagctaatagagttctt 95
            ||||||||||||||||||||
Sbjct: 1370 ccccagctaatagagttctt 1351



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>emb|AL121886.22|HS1028D15 Human DNA sequence from clone RP5-1028D15 on chromosome 20 Contains the
              3' end of the C20orf9 gene (NGD5, CGI-53), ribosomal
              protein L27a pseudogene RPL27AP, the MYBL2 gene for v-myb
              avian myeloblastosis viral oncogene homolog-like 2, the
              C20orf65 gene for a novel protein similar to Xenopus laevis
              D7 protein and three CpG islands, complete sequence
          Length = 136119

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tgtaaatttcaaaattgaga 22
              ||||||||||||||||||||
Sbjct: 116191 tgtaaatttcaaaattgaga 116172



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>gb|CP000183.1| Drosophila melanogaster genomic scaffold 211000022280458
          Length = 100390

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   aacctgcgcctgctgctgtg 273
             ||||||||||||||||||||
Sbjct: 52682 aacctgcgcctgctgctgtg 52663



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   aacctgcgcctgctgctgtg 273
             ||||||||||||||||||||
Sbjct: 50686 aacctgcgcctgctgctgtg 50667



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>dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-172F10, complete
              sequence
          Length = 164943

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    caatgggaaccaactttaca 140
              ||||||||||||||||||||
Sbjct: 148214 caatgggaaccaactttaca 148233


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,735,760
Number of Sequences: 3902068
Number of extensions: 2735760
Number of successful extensions: 48339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48324
Number of HSP's gapped (non-prelim): 15
length of query: 313
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 291
effective length of database: 17,147,199,772
effective search space: 4989835133652
effective search space used: 4989835133652
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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