| Clone Name | rbast17b01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 225 tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 284 |||||||||||||| | ||||| ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 35855553 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 35855612 Query: 285 ttggt 289 ||||| Sbjct: 35855613 ttggt 35855617
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1282_E10 Length = 107284 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 225 tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 284 |||||||||||||| | ||||| ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 46099 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 46158 Query: 285 ttggt 289 ||||| Sbjct: 46159 ttggt 46163
>dbj|AK102994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116E04, full insert sequence Length = 1547 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 225 tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 284 |||||||||||||| | ||||| ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 1292 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 1233 Query: 285 ttggt 289 ||||| Sbjct: 1232 ttggt 1228
>dbj|AK069209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009E01, full insert sequence Length = 1562 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 225 tactgtggtgcccgtgaggccatcctagcaacctgcgcctgctgctgtgcattgttgacc 284 |||||||||||||| | ||||| ||||||||||| ||||| || ||||| ||||| ||| Sbjct: 1307 tactgtggtgcccgagcagccattctagcaacctgagcctgttgttgtgccttgttcacc 1248 Query: 285 ttggt 289 ||||| Sbjct: 1247 ttggt 1243
>emb|AL080273.10|HSBA259P1 Human DNA sequence from clone RP11-259P1 on chromosome 22 Contains STSs, GSSs, genomic markers D22S1154, D22S310 and D22S690 and a gt repeat polymorphism, complete sequence Length = 48084 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 tgcgcctgctgctgtgcattg 278 ||||||||||||||||||||| Sbjct: 15106 tgcgcctgctgctgtgcattg 15086
>gb|AC012301.5|AC012301 Homo sapiens chromosome 18, clone RP11-383D22, complete sequence Length = 211466 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 aatgggaaccaactttacact 142 ||||||||||||||||||||| Sbjct: 62329 aatgggaaccaactttacact 62309
>ref|XM_384504.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04328.1) partial mRNA Length = 3987 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ccccagctaatagagttctt 95 |||||||||||||||||||| Sbjct: 1370 ccccagctaatagagttctt 1351
>emb|AL121886.22|HS1028D15 Human DNA sequence from clone RP5-1028D15 on chromosome 20 Contains the 3' end of the C20orf9 gene (NGD5, CGI-53), ribosomal protein L27a pseudogene RPL27AP, the MYBL2 gene for v-myb avian myeloblastosis viral oncogene homolog-like 2, the C20orf65 gene for a novel protein similar to Xenopus laevis D7 protein and three CpG islands, complete sequence Length = 136119 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tgtaaatttcaaaattgaga 22 |||||||||||||||||||| Sbjct: 116191 tgtaaatttcaaaattgaga 116172
>gb|CP000183.1| Drosophila melanogaster genomic scaffold 211000022280458 Length = 100390 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 aacctgcgcctgctgctgtg 273 |||||||||||||||||||| Sbjct: 52682 aacctgcgcctgctgctgtg 52663 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 aacctgcgcctgctgctgtg 273 |||||||||||||||||||| Sbjct: 50686 aacctgcgcctgctgctgtg 50667
>dbj|AP005272.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-172F10, complete sequence Length = 164943 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 caatgggaaccaactttaca 140 |||||||||||||||||||| Sbjct: 148214 caatgggaaccaactttaca 148233 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,735,760 Number of Sequences: 3902068 Number of extensions: 2735760 Number of successful extensions: 48339 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48324 Number of HSP's gapped (non-prelim): 15 length of query: 313 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 291 effective length of database: 17,147,199,772 effective search space: 4989835133652 effective search space used: 4989835133652 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)