ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast17a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY109222.1| Zea mays PCO091475 mRNA sequence 100 7e-18
2ref|XM_550458.1| Oryza sativa (japonica cultivar-group), mRNA 96 1e-16
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
4dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
5dbj|AK122178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
6dbj|AK105911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
7dbj|AK105782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
8dbj|AK105650.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
9dbj|AK073364.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
10emb|CR555306.1| Azoarcus sp. EbN1 complete genome 46 0.093
11ref|NM_192281.1| Oryza sativa (japonica cultivar-group), predic... 44 0.37
12gb|AY022763.1| Oryza sativa microsatellite MRG5088 containing (C... 44 0.37
13gb|AY735112.1| Streptomyces hygroscopicus mannopeptimycin biosyn... 44 0.37
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
15dbj|AP003725.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
16dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
17emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete ch... 42 1.5
18emb|AL031767.13|HS135L22 Human DNA sequence from clone RP1-135L2... 42 1.5
19emb|BX571724.9| Zebrafish DNA sequence from clone CH211-165B19 i... 42 1.5
20dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.5
21dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 1.5
22dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.5
23gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.8
24gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 5.8
25gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 5.8
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
27gb|AC024239.7| Homo sapiens BAC clone RP11-419K23 from 7, comple... 40 5.8
28gb|AC010971.3| Homo sapiens BAC clone RP11-122G11 from 7, comple... 40 5.8
29gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete s... 40 5.8
30emb|AL356268.12| Human DNA sequence from clone RP11-134P2 on chr... 40 5.8
31emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chr... 40 5.8
32gb|AC090136.6| Homo sapiens chromosome 8, clone RP11-21C4, compl... 40 5.8
33emb|BX470139.9| Zebrafish DNA sequence from clone CH211-141O12 i... 40 5.8
34gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.8
35gb|AC021518.12| Homo sapiens chromosome 8, clone RP11-313D2, com... 40 5.8
36gb|AC012535.11| Homo sapiens chromosome 8, clone RP11-115G12, co... 40 5.8
37gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.8
38gb|DQ139261.1| Vibro sp. DAT722 inDAT722 integron, complete sequ... 40 5.8
39dbj|AK044453.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 5.8
40dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
41gb|AF215845.3| Homo sapiens chromosome 8 clone CTD-2542N7 map q1... 40 5.8
42dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.8
43dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
44emb|BX323553.3| Zebrafish DNA sequence from clone CH211-218C8 in... 40 5.8
45dbj|AK070284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
46emb|AL391397.4|CNS06C87 Human chromosome 14 DNA sequence BAC R-6... 40 5.8
47emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 40 5.8
48emb|AL109758.3|CNS018OV Human chromosome 14 DNA sequence BAC R-8... 40 5.8
49emb|CR974428.13| Mouse DNA sequence from clone RP23-114O7 on chr... 40 5.8
50emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5,... 40 5.8
51dbj|AP000344.1| Homo sapiens genomic DNA, chromosome 22q11.2, cl... 40 5.8
52emb|AL663077.8| Mouse DNA sequence from clone RP23-22K4 on chrom... 40 5.8 
>gb|AY109222.1| Zea mays PCO091475 mRNA sequence
          Length = 813

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 116/138 (84%)
 Strand = Plus / Minus

                                                                       
Query: 237 gcactgctgcacggtgatctggtcgacggcgagcgtgtcggtggggaacgggcaggcgcc 296
           |||||||||||| |||| |||||||| ||  ||||||||||| ||||||||||| |||||
Sbjct: 495 gcactgctgcactgtgacctggtcgatgggcagcgtgtcggtcgggaacgggcatgcgcc 436

                                                                       
Query: 297 gccgtgggtgccctgcagaggcgcgcatggcgccggtgtgacgccggccgacacgccctc 356
           | |||| | |||||| || ||  |||| ||||| ||  |||||  ||||||||| |||||
Sbjct: 435 gtcgtgcgcgccctgtagcgggtcgcacggcgcggggctgacgttggccgacactccctc 376

                             
Query: 357 gacgtcggcgcagttcca 374
           || |||||||||||||||
Sbjct: 375 gatgtcggcgcagttcca 358
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>ref|XM_550458.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1640

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/148 (83%)
 Strand = Plus / Minus

                                                                        
Query: 229  gagtaggagcactgctgcacggtgatctggtcgacggcgagcgtgtcggtggggaacggg 288
            ||||||| ||||||||||| |  || |||||||| ||  |||||||| ||||||||||||
Sbjct: 1500 gagtaggcgcactgctgcatgacgagctggtcgatgggcagcgtgtccgtggggaacggg 1441

                                                                        
Query: 289  caggcgccgccgtgggtgccctgcagaggcgcgcatggcgccggtgtgacgccggccgac 348
            ||||||||  |||| |  |||||||| |||  ||| |||||||| ||||||||||  |||
Sbjct: 1440 caggcgccatcgtgcgccccctgcagcggctggcacggcgccggcgtgacgccggtggac 1381

                                        
Query: 349  acgccctcgacgtcggcgcagttccacg 376
            || ||||||| ||||| |||| ||||||
Sbjct: 1380 accccctcgatgtcggtgcaggtccacg 1353



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 405  ggtgacgttggccatgcagatgcc 428
            |||||||||||| |||||||||||
Sbjct: 1324 ggtgacgttggcgatgcagatgcc 1301
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/148 (83%)
 Strand = Plus / Plus

                                                                          
Query: 229    gagtaggagcactgctgcacggtgatctggtcgacggcgagcgtgtcggtggggaacggg 288
              ||||||| ||||||||||| |  || |||||||| ||  |||||||| ||||||||||||
Sbjct: 438316 gagtaggcgcactgctgcatgacgagctggtcgatgggcagcgtgtccgtggggaacggg 438375

                                                                          
Query: 289    caggcgccgccgtgggtgccctgcagaggcgcgcatggcgccggtgtgacgccggccgac 348
              ||||||||  |||| |  |||||||| |||  ||| |||||||| ||||||||||  |||
Sbjct: 438376 caggcgccatcgtgcgccccctgcagcggctggcacggcgccggcgtgacgccggtggac 438435

                                          
Query: 349    acgccctcgacgtcggcgcagttccacg 376
              || ||||||| ||||| |||| ||||||
Sbjct: 438436 accccctcgatgtcggtgcaggtccacg 438463



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 257      ggtcgacggcgagcgtgtcg 276
                ||||||||||||||||||||
Sbjct: 28801790 ggtcgacggcgagcgtgtcg 28801809



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 405    ggtgacgttggccatgcagatgcc 428
              |||||||||||| |||||||||||
Sbjct: 438492 ggtgacgttggcgatgcagatgcc 438515
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>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0644B06
          Length = 194509

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/148 (83%)
 Strand = Plus / Plus

                                                                          
Query: 229    gagtaggagcactgctgcacggtgatctggtcgacggcgagcgtgtcggtggggaacggg 288
              ||||||| ||||||||||| |  || |||||||| ||  |||||||| ||||||||||||
Sbjct: 148269 gagtaggcgcactgctgcatgacgagctggtcgatgggcagcgtgtccgtggggaacggg 148328

                                                                          
Query: 289    caggcgccgccgtgggtgccctgcagaggcgcgcatggcgccggtgtgacgccggccgac 348
              ||||||||  |||| |  |||||||| |||  ||| |||||||| ||||||||||  |||
Sbjct: 148329 caggcgccatcgtgcgccccctgcagcggctggcacggcgccggcgtgacgccggtggac 148388

                                          
Query: 349    acgccctcgacgtcggcgcagttccacg 376
              || ||||||| ||||| |||| ||||||
Sbjct: 148389 accccctcgatgtcggtgcaggtccacg 148416



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 405    ggtgacgttggccatgcagatgcc 428
              |||||||||||| |||||||||||
Sbjct: 148445 ggtgacgttggcgatgcagatgcc 148468
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>dbj|AK122178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148N22, full
            insert sequence
          Length = 1845

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/148 (83%)
 Strand = Plus / Minus

                                                                        
Query: 229  gagtaggagcactgctgcacggtgatctggtcgacggcgagcgtgtcggtggggaacggg 288
            ||||||| ||||||||||| |  || |||||||| ||  |||||||| ||||||||||||
Sbjct: 1594 gagtaggcgcactgctgcatgacgagctggtcgatgggcagcgtgtccgtggggaacggg 1535

                                                                        
Query: 289  caggcgccgccgtgggtgccctgcagaggcgcgcatggcgccggtgtgacgccggccgac 348
            ||||||||  |||| |  |||||||| |||  ||| |||||||| ||||||||||  |||
Sbjct: 1534 caggcgccatcgtgcgccccctgcagcggctggcacggcgccggcgtgacgccggtggac 1475

                                        
Query: 349  acgccctcgacgtcggcgcagttccacg 376
            || ||||||| ||||| |||| ||||||
Sbjct: 1474 accccctcgatgtcggtgcaggtccacg 1447



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 405  ggtgacgttggccatgcagatgcc 428
            |||||||||||| |||||||||||
Sbjct: 1418 ggtgacgttggcgatgcagatgcc 1395
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>dbj|AK105911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-G11, full
            insert sequence
          Length = 1755

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/148 (83%)
 Strand = Plus / Minus

                                                                        
Query: 229  gagtaggagcactgctgcacggtgatctggtcgacggcgagcgtgtcggtggggaacggg 288
            ||||||| ||||||||||| |  || |||||||| ||  |||||||| ||||||||||||
Sbjct: 1500 gagtaggcgcactgctgcatgacgagctggtcgatgggcagcgtgtccgtggggaacggg 1441

                                                                        
Query: 289  caggcgccgccgtgggtgccctgcagaggcgcgcatggcgccggtgtgacgccggccgac 348
            ||||||||  |||| |  |||||||| |||  ||| |||||||| ||||||||||  |||
Sbjct: 1440 caggcgccatcgtgcgccccctgcagcggctggcacggcgccggcgtgacgccggtggac 1381

                                        
Query: 349  acgccctcgacgtcggcgcagttccacg 376
            || ||||||| ||||| |||| ||||||
Sbjct: 1380 accccctcgatgtcggtgcaggtccacg 1353



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 405  ggtgacgttggccatgcagatgcc 428
            |||||||||||| |||||||||||
Sbjct: 1324 ggtgacgttggcgatgcagatgcc 1301
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>dbj|AK105782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G05, full
            insert sequence
          Length = 1640

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/148 (83%)
 Strand = Plus / Minus

                                                                        
Query: 229  gagtaggagcactgctgcacggtgatctggtcgacggcgagcgtgtcggtggggaacggg 288
            ||||||| ||||||||||| |  || |||||||| ||  |||||||| ||||||||||||
Sbjct: 1500 gagtaggcgcactgctgcatgacgagctggtcgatgggcagcgtgtccgtggggaacggg 1441

                                                                        
Query: 289  caggcgccgccgtgggtgccctgcagaggcgcgcatggcgccggtgtgacgccggccgac 348
            ||||||||  |||| |  |||||||| |||  ||| |||||||| ||||||||||  |||
Sbjct: 1440 caggcgccatcgtgcgccccctgcagcggctggcacggcgccggcgtgacgccggtggac 1381

                                        
Query: 349  acgccctcgacgtcggcgcagttccacg 376
            || ||||||| ||||| |||| ||||||
Sbjct: 1380 accccctcgatgtcggtgcaggtccacg 1353



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 405  ggtgacgttggccatgcagatgcc 428
            |||||||||||| |||||||||||
Sbjct: 1324 ggtgacgttggcgatgcagatgcc 1301
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>dbj|AK105650.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F11, full
            insert sequence
          Length = 1746

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/148 (83%)
 Strand = Plus / Minus

                                                                        
Query: 229  gagtaggagcactgctgcacggtgatctggtcgacggcgagcgtgtcggtggggaacggg 288
            ||||||| ||||||||||| |  || |||||||| ||  |||||||| ||||||||||||
Sbjct: 1495 gagtaggcgcactgctgcatgacgagctggtcgatgggcagcgtgtccgtggggaacggg 1436

                                                                        
Query: 289  caggcgccgccgtgggtgccctgcagaggcgcgcatggcgccggtgtgacgccggccgac 348
            ||||||||  |||| |  |||||||| |||  ||| |||||||| ||||||||||  |||
Sbjct: 1435 caggcgccatcgtgcgccccctgcagcggctggcacggcgccggcgtgacgccggtggac 1376

                                        
Query: 349  acgccctcgacgtcggcgcagttccacg 376
            || ||||||| ||||| |||| ||||||
Sbjct: 1375 accccctcgatgtcggtgcaggtccacg 1348



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 405  ggtgacgttggccatgcagatgcc 428
            |||||||||||| |||||||||||
Sbjct: 1319 ggtgacgttggcgatgcagatgcc 1296
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>dbj|AK073364.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B15, full
            insert sequence
          Length = 1756

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/148 (83%)
 Strand = Plus / Minus

                                                                        
Query: 229  gagtaggagcactgctgcacggtgatctggtcgacggcgagcgtgtcggtggggaacggg 288
            ||||||| ||||||||||| |  || |||||||| ||  |||||||| ||||||||||||
Sbjct: 1505 gagtaggcgcactgctgcatgacgagctggtcgatgggcagcgtgtccgtggggaacggg 1446

                                                                        
Query: 289  caggcgccgccgtgggtgccctgcagaggcgcgcatggcgccggtgtgacgccggccgac 348
            ||||||||  |||| |  |||||||| |||  ||| |||||||| ||||||||||  |||
Sbjct: 1445 caggcgccatcgtgcgccccctgcagcggctggcacggcgccggcgtgacgccggtggac 1386

                                        
Query: 349  acgccctcgacgtcggcgcagttccacg 376
            || ||||||| ||||| |||| ||||||
Sbjct: 1385 accccctcgatgtcggtgcaggtccacg 1358



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 405  ggtgacgttggccatgcagatgcc 428
            |||||||||||| |||||||||||
Sbjct: 1329 ggtgacgttggcgatgcagatgcc 1306
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 245     gcacggtgatctggtcgacggcg 267
               |||||||||||||||||||||||
Sbjct: 4283008 gcacggtgatctggtcgacggcg 4283030
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>ref|NM_192281.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 924

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 275 cggtggggaacgggcaggcgccgccg 300
           |||||||||||| |||||||||||||
Sbjct: 553 cggtggggaacgcgcaggcgccgccg 528
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>gb|AY022763.1| Oryza sativa microsatellite MRG5088 containing (CCT)X10, genomic
           sequence
          Length = 230

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 275 cggtggggaacgggcaggcgccgccg 300
           |||||||||||| |||||||||||||
Sbjct: 88  cggtggggaacgcgcaggcgccgccg 63
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>gb|AY735112.1| Streptomyces hygroscopicus mannopeptimycin biosynthetic gene cluster,
             complete sequence
          Length = 48200

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 256   tggtcgacggcgagcgtgtcgg 277
             ||||||||||||||||||||||
Sbjct: 45937 tggtcgacggcgagcgtgtcgg 45916
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 275      cggtggggaacgggcaggcgccgccg 300
                |||||||||||| |||||||||||||
Sbjct: 25819804 cggtggggaacgcgcaggcgccgccg 25819829
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>dbj|AP003725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510C12
          Length = 177049

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 275   cggtggggaacgggcaggcgccgccg 300
             |||||||||||| |||||||||||||
Sbjct: 59728 cggtggggaacgcgcaggcgccgccg 59753
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>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0039G05
          Length = 138429

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 275    cggtggggaacgggcaggcgccgccg 300
              |||||||||||| |||||||||||||
Sbjct: 122268 cggtggggaacgcgcaggcgccgccg 122293
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>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12
          Length = 300000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 246    cacggtgatctggtcgacggc 266
              |||||||||||||||||||||
Sbjct: 210988 cacggtgatctggtcgacggc 210968
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>emb|AL031767.13|HS135L22 Human DNA sequence from clone RP1-135L22 on chromosome 6p22.2-22.3
             Contains part of a novel gene, complete sequence
          Length = 121212

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 385   ctctccttggtcatctccatg 405
             |||||||||||||||||||||
Sbjct: 55343 ctctccttggtcatctccatg 55363
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>emb|BX571724.9| Zebrafish DNA sequence from clone CH211-165B19 in linkage group 9,
             complete sequence
          Length = 174709

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    attgttattcttgttgtattt 33
             |||||||||||||||||||||
Sbjct: 63282 attgttattcttgttgtattt 63262
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 286     gggcaggcgccgccgtgggtg 306
               |||||||||||||||||||||
Sbjct: 5744925 gggcaggcgccgccgtgggtg 5744905
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 294     gccgccgtgggtgccctgcag 314
               |||||||||||||||||||||
Sbjct: 1433326 gccgccgtgggtgccctgcag 1433346
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 343     gccgacacgccctcgacgtcg 363
               |||||||||||||||||||||
Sbjct: 2604299 gccgacacgccctcgacgtcg 2604319
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 315     aggcgcgcatggcgccggtg 334
               ||||||||||||||||||||
Sbjct: 1809889 aggcgcgcatggcgccggtg 1809870
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 119     attactacatgatcaagaagcagc 142
               |||||||| |||||||||||||||
Sbjct: 4208657 attactacctgatcaagaagcagc 4208680
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 119     attactacatgatcaagaagcagc 142
               |||||||| |||||||||||||||
Sbjct: 4012411 attactacctgatcaagaagcagc 4012434
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 405     ggtgacgttggccatgcagatgcc 428
               ||||||||||| ||||||||||||
Sbjct: 1413093 ggtgacgttggacatgcagatgcc 1413070
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>gb|AC024239.7| Homo sapiens BAC clone RP11-419K23 from 7, complete sequence
          Length = 156658

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     ttgttgtatttcatttcctt 42
              ||||||||||||||||||||
Sbjct: 106256 ttgttgtatttcatttcctt 106237
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>gb|AC010971.3| Homo sapiens BAC clone RP11-122G11 from 7, complete sequence
          Length = 155853

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     cttgttgtatttcatttcct 41
              ||||||||||||||||||||
Sbjct: 105333 cttgttgtatttcatttcct 105352
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>gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete sequence
          Length = 135940

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    tttgcaaacatttggctggc 101
             ||||||||||||||||||||
Sbjct: 55374 tttgcaaacatttggctggc 55355
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>emb|AL356268.12| Human DNA sequence from clone RP11-134P2 on chromosome 10 Contains part
             of the HPSE2 gene for heparanase 2, complete sequence
          Length = 127381

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   tccctgatgctgctgaagaa 201
             ||||||||||||||||||||
Sbjct: 77873 tccctgatgctgctgaagaa 77892
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>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the
             5' end of the SLC24A2 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger), member 2 (NCKX2) and
             a CpG island, complete sequence
          Length = 159900

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ttcttgttgtatttcatttc 39
             ||||||||||||||||||||
Sbjct: 45732 ttcttgttgtatttcatttc 45751
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>gb|AC090136.6| Homo sapiens chromosome 8, clone RP11-21C4, complete sequence
          Length = 186304

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    tacatgatcaagaagcagct 143
              ||||||||||||||||||||
Sbjct: 155785 tacatgatcaagaagcagct 155766
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>emb|BX470139.9| Zebrafish DNA sequence from clone CH211-141O12 in linkage group 5,
              complete sequence
          Length = 185997

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    aagaagcagaggatgcagga 216
              ||||||||||||||||||||
Sbjct: 156605 aagaagcagaggatgcagga 156624
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>gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1293G11,
             from chromosome 3, complete sequence
          Length = 147806

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 405   ggtgacgttggccatgcagatgcc 428
             ||||||||||| ||||||||||||
Sbjct: 74596 ggtgacgttggacatgcagatgcc 74573
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>gb|AC021518.12| Homo sapiens chromosome 8, clone RP11-313D2, complete sequence
          Length = 169566

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tacatgatcaagaagcagct 143
             ||||||||||||||||||||
Sbjct: 20033 tacatgatcaagaagcagct 20014
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>gb|AC012535.11| Homo sapiens chromosome 8, clone RP11-115G12, complete sequence
          Length = 173414

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tacatgatcaagaagcagct 143
             ||||||||||||||||||||
Sbjct: 33960 tacatgatcaagaagcagct 33941
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 281     ggaacgggcaggcgccgccgtggg 304
               ||||||||||||| ||||||||||
Sbjct: 2853461 ggaacgggcaggccccgccgtggg 2853438
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>gb|DQ139261.1| Vibro sp. DAT722 inDAT722 integron, complete sequence and flanking
              sequences
          Length = 136095

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     gctggccacatcatcagcaa 115
              ||||||||||||||||||||
Sbjct: 101220 gctggccacatcatcagcaa 101201
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>dbj|AK044453.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930014B10 product:PROTEIN PHOSPHATASE 1 REGULATORY
            SUBUNIT 16B homolog [Mus musculus], full insert sequence
          Length = 3457

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 183  ccctgatgctgctgaagaagcaga 206
            ||||||||||| ||||||||||||
Sbjct: 3105 ccctgatgctgttgaagaagcaga 3082
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 405     ggtgacgttggccatgcagatgcc 428
               ||||||||||| ||||||||||||
Sbjct: 1413091 ggtgacgttggacatgcagatgcc 1413068
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>gb|AF215845.3| Homo sapiens chromosome 8 clone CTD-2542N7 map q11-q13, complete
            sequence
          Length = 237705

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  tacatgatcaagaagcagct 143
            ||||||||||||||||||||
Sbjct: 9055 tacatgatcaagaagcagct 9074
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 325     ggcgccggtgtgacgccggccgac 348
               |||||||||||||||||| |||||
Sbjct: 5617633 ggcgccggtgtgacgccgtccgac 5617656
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0028E05
          Length = 157631

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    ggtcgacggcgagcgtgtcg 276
              ||||||||||||||||||||
Sbjct: 109565 ggtcgacggcgagcgtgtcg 109584
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>emb|BX323553.3| Zebrafish DNA sequence from clone CH211-218C8 in linkage group 2,
             complete sequence
          Length = 94088

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   aagaagcagaggatgcagga 216
             ||||||||||||||||||||
Sbjct: 27017 aagaagcagaggatgcagga 27036
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>dbj|AK070284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048L01, full
            insert sequence
          Length = 1579

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 405  ggtgacgttggccatgcagatgcc 428
            ||||||||||| ||||||||||||
Sbjct: 1257 ggtgacgttggacatgcagatgcc 1234
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>emb|AL391397.4|CNS06C87 Human chromosome 14 DNA sequence BAC R-625F13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165622

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   gctgctgaagaagcagagga 209
             ||||||||||||||||||||
Sbjct: 60103 gctgctgaagaagcagagga 60084
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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    aagaagcagaggatgcagga 216
              ||||||||||||||||||||
Sbjct: 125641 aagaagcagaggatgcagga 125622
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>emb|AL109758.3|CNS018OV Human chromosome 14 DNA sequence BAC R-873E2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 209512

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    cttgttgtatttcatttcct 41
             ||||||||||||||||||||
Sbjct: 51226 cttgttgtatttcatttcct 51245
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>emb|CR974428.13| Mouse DNA sequence from clone RP23-114O7 on chromosome 12, complete
             sequence
          Length = 197806

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   atcaagaagcagctgataag 149
             ||||||||||||||||||||
Sbjct: 61666 atcaagaagcagctgataag 61685
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>emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5, COMPLETE SEQUENCE
          Length = 106640

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tttgcaaacatttggctggc 101
             ||||||||||||||||||||
Sbjct: 12255 tttgcaaacatttggctggc 12274
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>dbj|AP000344.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1269D1
          Length = 186421

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   gaagcagaggatgcaggagt 218
             ||||||||||||||||||||
Sbjct: 82184 gaagcagaggatgcaggagt 82203
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>emb|AL663077.8| Mouse DNA sequence from clone RP23-22K4 on chromosome 2, complete
             sequence
          Length = 96128

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 183   ccctgatgctgctgaagaagcaga 206
             ||||||||||| ||||||||||||
Sbjct: 78246 ccctgatgctgttgaagaagcaga 78223


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,876,880
Number of Sequences: 3902068
Number of extensions: 3876880
Number of successful extensions: 85182
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84409
Number of HSP's gapped (non-prelim): 773
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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