>POLG_MCFA (P33515) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3341

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 114  VLGVRHDLICFLNFFALCFVFSSCKVNK 31
            VLGV   L CF+  +ALCF+FS  +  K
Sbjct: 2091 VLGVSIMLSCFIAVWALCFLFSLFRPKK 2118

>RRMJ3_PONPY (Q5RAS1) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 841

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 11/26 (42%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
 Frame = +2

Query: 29  NLLTLQDENTKQRAKK-LRKQIKSWR 103
           N++TLQ++ T +R ++ LRK++K+W+
Sbjct: 85  NVVTLQEDITTERCRQALRKELKTWK 110

>RRMJ3_MOUSE (Q9DBE9) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 838

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 11/26 (42%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
 Frame = +2

Query: 29  NLLTLQDENTKQRAKK-LRKQIKSWR 103
           N++TLQ++ T +R ++ LRK++K+W+
Sbjct: 85  NVVTLQEDITTERCRQALRKELKTWK 110

>RRMJ3_HUMAN (Q8IY81) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 847

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 11/26 (42%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
 Frame = +2

Query: 29  NLLTLQDENTKQRAKK-LRKQIKSWR 103
           N++TLQ++ T +R ++ LRK++K+W+
Sbjct: 85  NVVTLQEDITTERCRQALRKELKTWK 110

>RRMJ3_RAT (Q5RJT2) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 829

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 11/26 (42%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
 Frame = +2

Query: 29  NLLTLQDENTKQRAKK-LRKQIKSWR 103
           N++TLQ++ T +R ++ LRK++K+W+
Sbjct: 85  NVVTLQEDITTERCRQALRKELKTWK 110

>BAZ1B_MOUSE (Q9Z277) Bromodomain adjacent to zinc finger domain protein 1B|
           (Williams-Beuren syndrome chromosome region 9 protein
           homolog) (WBRS9)
          Length = 1479

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 20  WKNNLLTLQDENTKQRAKKLRKQ 88
           WK  L  L++EN K+RA+K +++
Sbjct: 778 WKERLAVLKEENDKKRAEKQKRK 800

>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B|
           (Williams-Beuren syndrome chromosome region 9 protein)
           (WBRS9) (Williams syndrome transcription factor)
           (hWALP2)
          Length = 1483

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 20  WKNNLLTLQDENTKQRAKKLRKQ 88
           WK  L  L++EN K+RA+K +++
Sbjct: 777 WKERLAVLKEENDKKRAEKQKRK 799


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,994,465
Number of Sequences: 219361
Number of extensions: 233618
Number of successful extensions: 943
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)