ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast16h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intr... 54 4e-05
2emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein 52 2e-04
3gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplas... 40 0.61
4gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, c... 40 0.61
5gb|AC169627.2| Mus musculus chromosome 5, clone wi1-232C12, comp... 38 2.4
6gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome... 38 2.4
7gb|AC122782.8| Mus musculus chromosome 5, clone RP24-224N3, comp... 38 2.4
8gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CI... 38 2.4
9gb|AC114938.3| Homo sapiens chromosome 16 clone CTD-2244D9, comp... 38 2.4
10emb|CR628336.1| Legionella pneumophila str. Paris complete genome 38 2.4
11gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, com... 38 2.4
12gb|AC133569.4| Homo sapiens chromosome 16 clone RP11-96K14, comp... 38 2.4
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.4
14gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, comp... 38 2.4
15gb|AC141293.2| Homo sapiens chromosome 16 clone RP11-51M16, comp... 38 2.4
16gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, comp... 38 2.4
17gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, com... 38 2.4
18dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 2.4
19gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, comp... 38 2.4
20gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, com... 38 2.4
21gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, com... 38 2.4
22dbj|AP001069.1| Homo sapiens genomic DNA, chromosome 21q22.1, cl... 38 2.4
23gb|CP000097.1| Synechococcus sp. CC9902, complete genome 36 9.5
24gb|AC107752.8| Mus musculus chromosome 10, clone RP23-244J13, co... 36 9.5
25gb|AC113518.9| Mus musculus chromosome 1, clone RP23-477L7, comp... 36 9.5
26emb|BX119320.11| Human DNA sequence from clone RP11-533O1 on chr... 36 9.5
27gb|AC023602.5| Homo sapiens 3 BAC RP11-16N5 (Roswell Park Cancer... 36 9.5
28dbj|AK095833.1| Homo sapiens cDNA FLJ38514 fis, clone HCHON20006... 36 9.5
29gb|AC103588.2| Homo sapiens chromosome 3 clone RP11-640H5, compl... 36 9.5
30emb|BX323822.7| Zebrafish DNA sequence from clone DKEY-46C2 in l... 36 9.5
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 36 9.5
32dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic D... 36 9.5
33dbj|AP004884.3| Oryza sativa (japonica cultivar-group) genomic D... 36 9.5
34gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete... 36 9.5
35emb|AL731706.14| Mouse DNA sequence from clone RP23-199B10 on ch... 36 9.5

>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA,
            complete cds
          Length = 1133

 Score = 54.0 bits (27), Expect = 4e-05
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 6    aactcaactgaacttgaaattactcgggcgg 36
            ||||||||| |||||||||||||||||||||
Sbjct: 1101 aactcaactcaacttgaaattactcgggcgg 1071



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>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein
          Length = 1020

 Score = 52.0 bits (26), Expect = 2e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 39   gaattcacaggttttacacaagcaaa 64
            ||||||||||||||||||||||||||
Sbjct: 1020 gaattcacaggttttacacaagcaaa 995



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>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome
          Length = 164921

 Score = 40.1 bits (20), Expect = 0.61
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aactgaacttgaaattactc 30
             ||||||||||||||||||||
Sbjct: 98129 aactgaacttgaaattactc 98148



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>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence
          Length = 215303

 Score = 40.1 bits (20), Expect = 0.61
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      aactcaactgaacttgaaat 25
              ||||||||||||||||||||
Sbjct: 198046 aactcaactgaacttgaaat 198065



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>gb|AC169627.2| Mus musculus chromosome 5, clone wi1-232C12, complete sequence
          Length = 44799

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    actgaacttgaaattactc 30
             |||||||||||||||||||
Sbjct: 39913 actgaacttgaaattactc 39931



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>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0077J17, complete sequence
          Length = 141598

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     aactcaactgaacttgaaa 24
             |||||||||||||||||||
Sbjct: 26934 aactcaactgaacttgaaa 26916



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>gb|AC122782.8| Mus musculus chromosome 5, clone RP24-224N3, complete sequence
          Length = 173643

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    actgaacttgaaattactc 30
             |||||||||||||||||||
Sbjct: 12554 actgaacttgaaattactc 12572



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>gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CIT987-SK37914  ~complete genomic
              sequence, complete sequence
          Length = 161580

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     attcacaggttttacacaa 59
              |||||||||||||||||||
Sbjct: 123756 attcacaggttttacacaa 123738



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>gb|AC114938.3| Homo sapiens chromosome 16 clone CTD-2244D9, complete sequence
          Length = 166928

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   attcacaggttttacacaa 59
            |||||||||||||||||||
Sbjct: 6390 attcacaggttttacacaa 6372



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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 11      aactgaacttgaaattact 29
               |||||||||||||||||||
Sbjct: 2771253 aactgaacttgaaattact 2771235



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>gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, complete sequence
          Length = 161261

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    attcacaggttttacacaa 59
             |||||||||||||||||||
Sbjct: 87559 attcacaggttttacacaa 87541



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>gb|AC133569.4| Homo sapiens chromosome 16 clone RP11-96K14, complete sequence
          Length = 107932

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   attcacaggttttacacaa 59
            |||||||||||||||||||
Sbjct: 3345 attcacaggttttacacaa 3327



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 6        aactcaactgaacttgaaa 24
                |||||||||||||||||||
Sbjct: 16386497 aactcaactgaacttgaaa 16386479



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>gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, complete sequence
          Length = 196550

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    attcacaggttttacacaa 59
             |||||||||||||||||||
Sbjct: 82011 attcacaggttttacacaa 82029



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>gb|AC141293.2| Homo sapiens chromosome 16 clone RP11-51M16, complete sequence
          Length = 185339

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     attcacaggttttacacaa 59
              |||||||||||||||||||
Sbjct: 181995 attcacaggttttacacaa 182013



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>gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, complete sequence
          Length = 167832

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    attcacaggttttacacaa 59
             |||||||||||||||||||
Sbjct: 64125 attcacaggttttacacaa 64107



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>gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, complete sequence
          Length = 221622

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     attcacaggttttacacaa 59
              |||||||||||||||||||
Sbjct: 151955 attcacaggttttacacaa 151973



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>dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, section 52/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 11     aactgaacttgaaattact 29
              |||||||||||||||||||
Sbjct: 249759 aactgaacttgaaattact 249777



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>gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, complete sequence
          Length = 182046

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    attcacaggttttacacaa 59
             |||||||||||||||||||
Sbjct: 64125 attcacaggttttacacaa 64107



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>gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, complete sequence
          Length = 184294

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    attcacaggttttacacaa 59
             |||||||||||||||||||
Sbjct: 38149 attcacaggttttacacaa 38167



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>gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, complete sequence
          Length = 161397

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     attcacaggttttacacaa 59
              |||||||||||||||||||
Sbjct: 128089 attcacaggttttacacaa 128071



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>dbj|AP001069.1| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B382J1, SOD-AML
             region, complete sequence
          Length = 105567

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aactgaacttgaaattact 29
             |||||||||||||||||||
Sbjct: 41704 aactgaacttgaaattact 41722



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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      attccaactcaactgaac 18
              ||||||||||||||||||
Sbjct: 461320 attccaactcaactgaac 461303



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>gb|AC107752.8| Mus musculus chromosome 10, clone RP23-244J13, complete sequence
          Length = 208458

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     aactcaactgaacttgaa 23
             ||||||||||||||||||
Sbjct: 96779 aactcaactgaacttgaa 96762



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>gb|AC113518.9| Mus musculus chromosome 1, clone RP23-477L7, complete sequence
          Length = 194281

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 5      caactcaactgaacttga 22
              ||||||||||||||||||
Sbjct: 130996 caactcaactgaacttga 130979



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>emb|BX119320.11| Human DNA sequence from clone RP11-533O1 on chromosome 1, complete
             sequence
          Length = 68709

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    caactgaacttgaaatta 27
             ||||||||||||||||||
Sbjct: 14575 caactgaacttgaaatta 14592



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>gb|AC023602.5| Homo sapiens 3 BAC RP11-16N5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96959

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     attccaactcaactgaac 18
             ||||||||||||||||||
Sbjct: 40887 attccaactcaactgaac 40904



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>dbj|AK095833.1| Homo sapiens cDNA FLJ38514 fis, clone HCHON2000673, highly
          similar to CD166 ANTIGEN PRECURSOR
          Length = 2844

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 1  attccaactcaactgaac 18
          ||||||||||||||||||
Sbjct: 49 attccaactcaactgaac 32



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>gb|AC103588.2| Homo sapiens chromosome 3 clone RP11-640H5, complete sequence
          Length = 208670

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     attccaactcaactgaac 18
             ||||||||||||||||||
Sbjct: 98208 attccaactcaactgaac 98191



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>emb|BX323822.7| Zebrafish DNA sequence from clone DKEY-46C2 in linkage group 19, complete
              sequence
          Length = 204327

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 41     attcacaggttttacaca 58
              ||||||||||||||||||
Sbjct: 145222 attcacaggttttacaca 145205



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 4        ccaactcaactgaacttg 21
                ||||||||||||||||||
Sbjct: 16704776 ccaactcaactgaacttg 16704759



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>dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0091C16
          Length = 162527

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     ccaactcaactgaacttg 21
             ||||||||||||||||||
Sbjct: 81831 ccaactcaactgaacttg 81814



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>dbj|AP004884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0519B12
          Length = 147542

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 4      ccaactcaactgaacttg 21
              ||||||||||||||||||
Sbjct: 146743 ccaactcaactgaacttg 146726



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>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence
          Length = 229073

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 41     attcacaggttttacaca 58
              ||||||||||||||||||
Sbjct: 173940 attcacaggttttacaca 173923



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>emb|AL731706.14| Mouse DNA sequence from clone RP23-199B10 on chromosome 2, complete
              sequence
          Length = 195301

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 4      ccaactcaactgaacttgaaat 25
              ||||||| ||||||||||||||
Sbjct: 134437 ccaactccactgaacttgaaat 134416


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 473,935
Number of Sequences: 3902068
Number of extensions: 473935
Number of successful extensions: 27360
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27269
Number of HSP's gapped (non-prelim): 91
length of query: 64
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 43
effective length of database: 17,151,101,840
effective search space: 737497379120
effective search space used: 737497379120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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