| Clone Name | rbast16h11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA, complete cds Length = 1133 Score = 54.0 bits (27), Expect = 4e-05 Identities = 30/31 (96%) Strand = Plus / Minus Query: 6 aactcaactgaacttgaaattactcgggcgg 36 ||||||||| ||||||||||||||||||||| Sbjct: 1101 aactcaactcaacttgaaattactcgggcgg 1071
>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein Length = 1020 Score = 52.0 bits (26), Expect = 2e-04 Identities = 26/26 (100%) Strand = Plus / Minus Query: 39 gaattcacaggttttacacaagcaaa 64 |||||||||||||||||||||||||| Sbjct: 1020 gaattcacaggttttacacaagcaaa 995
>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome Length = 164921 Score = 40.1 bits (20), Expect = 0.61 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aactgaacttgaaattactc 30 |||||||||||||||||||| Sbjct: 98129 aactgaacttgaaattactc 98148
>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence Length = 215303 Score = 40.1 bits (20), Expect = 0.61 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aactcaactgaacttgaaat 25 |||||||||||||||||||| Sbjct: 198046 aactcaactgaacttgaaat 198065
>gb|AC169627.2| Mus musculus chromosome 5, clone wi1-232C12, complete sequence Length = 44799 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 actgaacttgaaattactc 30 ||||||||||||||||||| Sbjct: 39913 actgaacttgaaattactc 39931
>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J17, complete sequence Length = 141598 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 aactcaactgaacttgaaa 24 ||||||||||||||||||| Sbjct: 26934 aactcaactgaacttgaaa 26916
>gb|AC122782.8| Mus musculus chromosome 5, clone RP24-224N3, complete sequence Length = 173643 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 actgaacttgaaattactc 30 ||||||||||||||||||| Sbjct: 12554 actgaacttgaaattactc 12572
>gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CIT987-SK37914 ~complete genomic sequence, complete sequence Length = 161580 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 123756 attcacaggttttacacaa 123738
>gb|AC114938.3| Homo sapiens chromosome 16 clone CTD-2244D9, complete sequence Length = 166928 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 6390 attcacaggttttacacaa 6372
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 aactgaacttgaaattact 29 ||||||||||||||||||| Sbjct: 2771253 aactgaacttgaaattact 2771235
>gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, complete sequence Length = 161261 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 87559 attcacaggttttacacaa 87541
>gb|AC133569.4| Homo sapiens chromosome 16 clone RP11-96K14, complete sequence Length = 107932 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 3345 attcacaggttttacacaa 3327
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 aactcaactgaacttgaaa 24 ||||||||||||||||||| Sbjct: 16386497 aactcaactgaacttgaaa 16386479
>gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, complete sequence Length = 196550 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 82011 attcacaggttttacacaa 82029
>gb|AC141293.2| Homo sapiens chromosome 16 clone RP11-51M16, complete sequence Length = 185339 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 181995 attcacaggttttacacaa 182013
>gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, complete sequence Length = 167832 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 64125 attcacaggttttacacaa 64107
>gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, complete sequence Length = 221622 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 151955 attcacaggttttacacaa 151973
>dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, section 52/105 Length = 340000 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aactgaacttgaaattact 29 ||||||||||||||||||| Sbjct: 249759 aactgaacttgaaattact 249777
>gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, complete sequence Length = 182046 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 64125 attcacaggttttacacaa 64107
>gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, complete sequence Length = 184294 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 38149 attcacaggttttacacaa 38167
>gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, complete sequence Length = 161397 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 128089 attcacaggttttacacaa 128071
>dbj|AP001069.1| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B382J1, SOD-AML region, complete sequence Length = 105567 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aactgaacttgaaattact 29 ||||||||||||||||||| Sbjct: 41704 aactgaacttgaaattact 41722
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 attccaactcaactgaac 18 |||||||||||||||||| Sbjct: 461320 attccaactcaactgaac 461303
>gb|AC107752.8| Mus musculus chromosome 10, clone RP23-244J13, complete sequence Length = 208458 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 aactcaactgaacttgaa 23 |||||||||||||||||| Sbjct: 96779 aactcaactgaacttgaa 96762
>gb|AC113518.9| Mus musculus chromosome 1, clone RP23-477L7, complete sequence Length = 194281 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 5 caactcaactgaacttga 22 |||||||||||||||||| Sbjct: 130996 caactcaactgaacttga 130979
>emb|BX119320.11| Human DNA sequence from clone RP11-533O1 on chromosome 1, complete sequence Length = 68709 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 caactgaacttgaaatta 27 |||||||||||||||||| Sbjct: 14575 caactgaacttgaaatta 14592
>gb|AC023602.5| Homo sapiens 3 BAC RP11-16N5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96959 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 attccaactcaactgaac 18 |||||||||||||||||| Sbjct: 40887 attccaactcaactgaac 40904
>dbj|AK095833.1| Homo sapiens cDNA FLJ38514 fis, clone HCHON2000673, highly similar to CD166 ANTIGEN PRECURSOR Length = 2844 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 attccaactcaactgaac 18 |||||||||||||||||| Sbjct: 49 attccaactcaactgaac 32
>gb|AC103588.2| Homo sapiens chromosome 3 clone RP11-640H5, complete sequence Length = 208670 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 attccaactcaactgaac 18 |||||||||||||||||| Sbjct: 98208 attccaactcaactgaac 98191
>emb|BX323822.7| Zebrafish DNA sequence from clone DKEY-46C2 in linkage group 19, complete sequence Length = 204327 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacaca 58 |||||||||||||||||| Sbjct: 145222 attcacaggttttacaca 145205
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 4 ccaactcaactgaacttg 21 |||||||||||||||||| Sbjct: 16704776 ccaactcaactgaacttg 16704759
>dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0091C16 Length = 162527 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 4 ccaactcaactgaacttg 21 |||||||||||||||||| Sbjct: 81831 ccaactcaactgaacttg 81814
>dbj|AP004884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519B12 Length = 147542 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 4 ccaactcaactgaacttg 21 |||||||||||||||||| Sbjct: 146743 ccaactcaactgaacttg 146726
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence Length = 229073 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacaca 58 |||||||||||||||||| Sbjct: 173940 attcacaggttttacaca 173923
>emb|AL731706.14| Mouse DNA sequence from clone RP23-199B10 on chromosome 2, complete sequence Length = 195301 Score = 36.2 bits (18), Expect = 9.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 ccaactcaactgaacttgaaat 25 ||||||| |||||||||||||| Sbjct: 134437 ccaactccactgaacttgaaat 134416 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 473,935 Number of Sequences: 3902068 Number of extensions: 473935 Number of successful extensions: 27360 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27269 Number of HSP's gapped (non-prelim): 91 length of query: 64 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 43 effective length of database: 17,151,101,840 effective search space: 737497379120 effective search space used: 737497379120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)