>TFAM_HUMAN (Q00059) Transcription factor A, mitochondrial precursor (mtTFA)|
           (Mitochondrial transcription factor 1) (MtTF1)
           (Transcription factor 6-like 2)
          Length = 246

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 55  TPDQQQSYSLQAI--HKRRRYVYKNKGIAIVGKPKRPK 162
           TP Q  S   + +  H +R+ + K K + ++GKPKRP+
Sbjct: 122 TPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPR 159

>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2124

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 17   WSDKPPKTYTSTQPLTSNNPTAYRPSTREEDTYTKIKELP*LASPRGQKKTDS 175
            W+        + Q + S NP+     T+  +T   + + P LASP G  +T+S
Sbjct: 1854 WAQSTQHPTETLQEIGSPNPSYSGEETQTAETAKSLTDTPTLASPEGSGETES 1906

>TEGU_SHV21 (Q01056) Probable large tegument protein|
          Length = 2469

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +2

Query: 20  SDKPPKTYTSTQPLTSNNP-TAYRPSTREEDT--YTKIKELP*LASPRGQKKTDSRLIR 187
           + KPPKT  + +P T   P T  +P T +E T  Y K K+ P +  P+  KK+   L +
Sbjct: 256 TQKPPKTPRTPKPATPKAPKTPRKPKTPKESTIPYDKSKKPPKI--PKTSKKSKKVLTK 312

>MFAP5_MOUSE (Q9QZJ6) Microfibrillar-associated protein 5 precursor (MFAP-5)|
           (Microfibril-associated glycoprotein 2) (MAGP-2)
          Length = 164

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +2

Query: 23  DKPPKTYTSTQPLT---SNNPTAYRPSTREEDTYTKIKELP*LASPRGQKKTDSRLIRSY 193
           D  P+T+T    L    S + TA    T   D     K     A  R +K   +RL  S 
Sbjct: 32  DDVPETFTDDPNLVNDPSTDDTALADITPSTDDLAGDKNAT--AECRDEKFACTRLY-SV 88

Query: 194 HRTRRQCVHQRRVTIL 241
           HR  RQCVHQ   T L
Sbjct: 89  HRPVRQCVHQSCFTSL 104

>ZO1_CANFA (O97758) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
            (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1769

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 56   PLTSNNPTAYRPSTRE---EDTYTKIKELP*LASPRGQKKTDSRLIRSYHR 199
            P + N P  +RP  RE   + T+   K  P  A   G ++T   +  +Y+R
Sbjct: 1477 PPSQNKPATFRPPNREDTVQSTFYPQKSFPDKAPVNGAEQTQKTVTPAYNR 1527

>VE2_BPV3 (Q8BDD6) Regulatory protein E2|
          Length = 414

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 24/80 (30%), Positives = 35/80 (43%)
 Frame = +3

Query: 42  TLPRNP*PATILQPTGHPQEKKIRIQK*RNCHSWQAQEAKKKQTVVSSDRIIGRVVSACT 221
           +LP  P      Q  GHP+ K    ++  +  S   ++++ +    SS R   R  S   
Sbjct: 202 SLPPGPNRRRGPQTRGHPRHKSASFRRSASSGS-DTRDSRGRSRSPSSSRSRSRSRSRSP 260

Query: 222 SGVSQSSEHERPRAPERHLP 281
           SG      H RPRAP  H+P
Sbjct: 261 SG-----SHSRPRAP--HVP 273

>FTSK_STRP3 (Q8K8E8) DNA translocase ftsK|
          Length = 801

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 111 RIQK*RNCHSWQAQEAKKKQTVVSSDRIIGRVVSACTSGVSQSSEHERPRAPE 269
           R+Q  +     QAQE +K+   ++ D   G +V    S VS     + P+ PE
Sbjct: 215 RLQAEKEALEKQAQEEEKRLAELTVDPETGEIVEDSQSQVSYDLAEDMPKEPE 267

>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
            (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1745

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 56   PLTSNNPTAYRPSTREE--DTYTKIKELP*LASPRGQKKTDSRLIRSYHR 199
            P + + P  +RP TRE+   T+   K  P  A   G ++T   +   Y+R
Sbjct: 1474 PPSQSKPATFRPPTREDPPQTFYPQKSFPDKAPVNGAEQTQKTITPVYNR 1523

>CTL1_RAT (Q8VII6) Choline transporter-like protein 1 (Solute carrier family|
           44 member 1) (CD92 antigen) (CDw92)
          Length = 656

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = -2

Query: 130 FLYFCIRIFFSCGWPV----GCRIVAGQGLRGSVC 38
           F+ FCI + F CG+ V      R+V+G    G++C
Sbjct: 34  FVLFCIGMGFICGFSVATGAAARLVSGYDSYGNIC 68

>CTL1_HUMAN (Q8WWI5) Choline transporter-like protein 1 (Solute carrier family|
           44 member 1) (CD92 antigen) (CDw92)
          Length = 657

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = -2

Query: 130 FLYFCIRIFFSCGWPV----GCRIVAGQGLRGSVC 38
           F+ FCI + F CG+ +      R+V+G    G++C
Sbjct: 35  FILFCIGMGFICGFSIATGAAARLVSGYDSYGNIC 69

>SRY_MACMU (Q9BG90) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 204

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 58  PDQQQSYSLQAIHKRRRYVYKNKGIAIVGKPKRPKKNRQSSHQIVSSDASSV 213
           P  Q++  LQA+H+ +   YK +       P+R  K  Q+S  ++ +D SSV
Sbjct: 108 PFFQEAQKLQAMHREKYPNYKYR-------PRRKAKMLQNSCSLLPADPSSV 152

>CTL1_MOUSE (Q6X893) Choline transporter-like protein 1 (Solute carrier family|
           44 member 1) (CD92 antigen) (CDw92)
          Length = 653

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = -2

Query: 130 FLYFCIRIFFSCGWPV----GCRIVAGQGLRGSVC 38
           F+ FCI + F CG+ V      R+V+G    G++C
Sbjct: 34  FVLFCIGMGFICGFSVATGAAARLVSGYDSYGNIC 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,416,614
Number of Sequences: 219361
Number of extensions: 695669
Number of successful extensions: 2467
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2457
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)