ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast16h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.24
2dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.24
3gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 0.94
4ref|XM_569464.1| Cryptococcus neoformans var. neoformans JEC21 h... 42 0.94
5emb|AL512506.8| Human DNA sequence from clone RP11-5G9 on chromo... 40 3.7
6emb|AL136313.27| Human DNA sequence from clone RP4-551N11 on chr... 40 3.7
7emb|AL929021.13| Mouse DNA sequence from clone RP23-89H14 on chr... 40 3.7
8emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chro... 40 3.7

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 72       atcctacagcctacaggccatc 93
                ||||||||||||||||||||||
Sbjct: 23100927 atcctacagcctacaggccatc 23100906



to top

>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_D09
          Length = 138615

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 72    atcctacagcctacaggccatc 93
             ||||||||||||||||||||||
Sbjct: 67965 atcctacagcctacaggccatc 67944



to top

>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    gaagatacgtatacaaaaata 124
              |||||||||||||||||||||
Sbjct: 568981 gaagatacgtatacaaaaata 569001



to top

>ref|XM_569464.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNC02030) partial mRNA
          Length = 1584

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 104 gaagatacgtatacaaaaata 124
           |||||||||||||||||||||
Sbjct: 151 gaagatacgtatacaaaaata 131



to top

>emb|AL512506.8| Human DNA sequence from clone RP11-5G9 on chromosome 13 Contains the 5'
             end of a novel gene, parts of 2 novel genes, a
             diacylglycerol kinase pseudogene and a CpG island,
             complete sequence
          Length = 167875

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   atacgtatacaaaaataaag 127
             ||||||||||||||||||||
Sbjct: 39768 atacgtatacaaaaataaag 39787



to top

>emb|AL136313.27| Human DNA sequence from clone RP4-551N11 on chromosome 6, complete
             sequence
          Length = 128152

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    caacaatcctacagcctaca 86
             ||||||||||||||||||||
Sbjct: 64418 caacaatcctacagcctaca 64437



to top

>emb|AL929021.13| Mouse DNA sequence from clone RP23-89H14 on chromosome 2, complete
              sequence
          Length = 181549

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     atcctacagcctacaggcca 91
              ||||||||||||||||||||
Sbjct: 181227 atcctacagcctacaggcca 181208



to top

>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete
            sequence
          Length = 226251

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 72   atcctacagcctacaggcca 91
            ||||||||||||||||||||
Sbjct: 1679 atcctacagcctacaggcca 1660


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,494,169
Number of Sequences: 3902068
Number of extensions: 2494169
Number of successful extensions: 41782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41753
Number of HSP's gapped (non-prelim): 29
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top