>ref|XM_467310.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 831

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 171 ttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttggggtc 230
           |||||| ||||||||||||||||||||||||  |||||||  ||||||||||||||||||
Sbjct: 586 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 527

                    
Query: 231 cttcccgtc 239
           ||| |||||
Sbjct: 526 cttgccgtc 518

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                            
Query: 171      ttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttggggtc 230
                |||||| ||||||||||||||||||||||||  |||||||  ||||||||||||||||||
Sbjct: 28792012 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 28791953

                         
Query: 231      cttcccgtc 239
                ||| |||||
Sbjct: 28791952 cttgccgtc 28791944

>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0459B01
          Length = 163087

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                          
Query: 171    ttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttggggtc 230
              |||||| ||||||||||||||||||||||||  |||||||  ||||||||||||||||||
Sbjct: 108585 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 108526

                       
Query: 231    cttcccgtc 239
              ||| |||||
Sbjct: 108525 cttgccgtc 108517

>dbj|AK121709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076B01, full
           insert sequence
          Length = 831

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 171 ttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttggggtc 230
           |||||| ||||||||||||||||||||||||  |||||||  ||||||||||||||||||
Sbjct: 586 ttaagctgaggggatctcgacctcgccgtcggagatctcctgctgcaggtccttggggtc 527

                    
Query: 231 cttcccgtc 239
           ||| |||||
Sbjct: 526 cttgccgtc 518

>gb|BT016283.1| Zea mays clone Contig116 mRNA sequence
          Length = 972

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 171 ttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttggggtc 230
           |||||| || |||||||| |||||||||||||| ||||||  ||||||||||||||||||
Sbjct: 539 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 480

                     
Query: 231 cttcccgtcg 240
           ||| ||||||
Sbjct: 479 cttgccgtcg 470

>gb|AY108131.1| Zea mays PCO114887 mRNA sequence
          Length = 851

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 167 gcctttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttgg 226
           |||||||||| ||||||||||||||||| || || |||||||||  ||||| ||||||||
Sbjct: 669 gcctttaagctgaggggatctcgacctcaccatcatcgatctcctgctgcaagtccttgg 610

                     
Query: 227 ggtccttccc 236
           ||||||||||
Sbjct: 609 ggtccttccc 600

>gb|BT016773.1| Zea mays clone Contig606 mRNA sequence
          Length = 793

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                       
Query: 181 gggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttggggtccttcccgtcg 240
           |||||||||||||||||||| || ||||||  ||||||||||||||||||||| ||||||
Sbjct: 556 gggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtccttgccgtcg 497

>gb|BT017079.1| Zea mays clone EL01N0360A10.c mRNA sequence
          Length = 763

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                       
Query: 167 gcctttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttgg 226
           |||||||||| || |||||||||||||| || || |||||||||  ||||| ||||||||
Sbjct: 604 gcctttaagctgatgggatctcgacctcaccatcatcgatctcctgctgcaagtccttgg 545

                     
Query: 227 ggtccttccc 236
           ||||||||||
Sbjct: 544 ggtccttccc 535

>gb|BT018230.1| Zea mays clone EL01N0562B02.c mRNA sequence
          Length = 646

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                       
Query: 167 gcctttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttgg 226
           |||||||||| || |||||||||||||| || || |||||||||  ||||| ||||||||
Sbjct: 375 gcctttaagctgatgggatctcgacctcaccatcatcgatctcctgctgcaagtccttgg 316

                     
Query: 227 ggtccttccc 236
           ||||||||||
Sbjct: 315 ggtccttccc 306

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                            
Query: 170      tttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttggggt 229
                ||||||| || ||||||||||||||||| |||  |||||||  |||||| ||||||||||
Sbjct: 30214938 tttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggt 30214879

                           
Query: 230      ccttcccgtcg 240
                |||| ||||||
Sbjct: 30214878 ccttgccgtcg 30214868

>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
              complete sequence
          Length = 186142

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                          
Query: 170    tttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttggggt 229
              ||||||| || ||||||||||||||||| |||  |||||||  |||||| ||||||||||
Sbjct: 111229 tttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggt 111170

                         
Query: 230    ccttcccgtcg 240
              |||| ||||||
Sbjct: 111169 ccttgccgtcg 111159

>ref|XM_462686.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 501

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                       
Query: 171 ttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttggggtc 230
           |||||| || ||||||||||||||||| |||  |||||||  |||||| |||||||||||
Sbjct: 501 ttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggtc 442

                     
Query: 231 cttcccgtcg 240
           ||| ||||||
Sbjct: 441 cttgccgtcg 432

>ref|XM_473741.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 501

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                       
Query: 171 ttaagcagaggggatctcgacctcgccgtcgtcgatctccgtctgcaggtccttggggtc 230
           |||||| || ||||||||||||||||| |||  |||||||  |||||| |||||||||||
Sbjct: 501 ttaagccgaagggatctcgacctcgccatcggagatctcctgctgcagatccttggggtc 442

                     
Query: 231 cttcccgtcg 240
           ||| ||||||
Sbjct: 441 cttgccgtcg 432

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 183     gatctcgacctcgccgtcgtcga 205
               |||||||||||||||||||||||
Sbjct: 2643897 gatctcgacctcgccgtcgtcga 2643919



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 189     gacctcgccgtcgtcgatct 208
               ||||||||||||||||||||
Sbjct: 1370487 gacctcgccgtcgtcgatct 1370468

>ref|XM_539956.2| PREDICTED: Canis familiaris similar to Adapter-related protein
           complex 3 mu 2 subunit (Clathrin coat assembly protein
           AP47 homolog 2) (Clathrin coat associated protein AP47
           homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2)
           (HA1 47 kDa subunit homolog 2) (Clathrin assem...
           (LOC482841), mRNA
          Length = 1497

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 64  atgacaaaaagaggagggacc 84
           |||||||||||||||||||||
Sbjct: 335 atgacaaaaagaggagggacc 315

>gb|BT018802.1| Zea mays clone EL01N0529D05.d mRNA sequence
          Length = 1451

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 201 gtcgatctccgtctgcaggtcctt 224
           ||||||| ||||||||||||||||
Sbjct: 688 gtcgatcgccgtctgcaggtcctt 665

>gb|AC022235.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-121E15, complete
            sequence
          Length = 197761

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   taaaatatgacaaaaagagg 77
            ||||||||||||||||||||
Sbjct: 4378 taaaatatgacaaaaagagg 4397

>gb|AC108947.5| Mus musculus BAC clone RP23-140A11 from chromosome 13, complete sequence
          Length = 187401

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     aaaatatgacaaaaagagga 78
              ||||||||||||||||||||
Sbjct: 141533 aaaatatgacaaaaagagga 141552

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 183    gatctcgacctcgccgtcgtcgat 206
              ||||||||||||||||||| ||||
Sbjct: 250075 gatctcgacctcgccgtcgacgat 250098

>ref|XM_753332.1| Ustilago maydis 521 hypothetical protein (UM02278.1) partial mRNA
          Length = 1089

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  acctcgccgtcgtcgatctc 209
            ||||||||||||||||||||
Sbjct: 1070 acctcgccgtcgtcgatctc 1051

>gb|AC151342.2| Xenopus tropicalis clone ISB-364G13, complete sequence
          Length = 64991

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 1     ctacattgcaaagaccaaatatgcagta 28
             |||| |||||||||||||| ||||||||
Sbjct: 17829 ctaccttgcaaagaccaaacatgcagta 17856

>gb|AC008934.5| Homo sapiens chromosome 5 clone CITB-H1_2301A11, complete sequence
          Length = 135800

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   tacataagcaacatttccaa 119
             ||||||||||||||||||||
Sbjct: 36496 tacataagcaacatttccaa 36477

>gb|AC011354.4|AC011354 Homo sapiens chromosome 5 clone CTC-354F19, complete sequence
          Length = 133042

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    caggaggtctcacaggattt 52
             ||||||||||||||||||||
Sbjct: 65023 caggaggtctcacaggattt 65004

>gb|AC078790.2| Mus musculus strain C57BL6/J chromosome 6 clone RP23-232C14, complete
              sequence
          Length = 173690

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     taaaatatgacaaaaagagg 77
              ||||||||||||||||||||
Sbjct: 149550 taaaatatgacaaaaagagg 149569

>gb|AE004980.1| Halobacterium sp. NRC-1 section 11 of 170 of the complete genome
          Length = 10177

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  acctcgccgtcgtcgatctc 209
            ||||||||||||||||||||
Sbjct: 3351 acctcgccgtcgtcgatctc 3332

>gb|AC151354.2| Xenopus tropicalis clone ISB-50I7, complete sequence
          Length = 56590

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 1     ctacattgcaaagaccaaatatgcagta 28
             |||| |||||||||||||| ||||||||
Sbjct: 27322 ctaccttgcaaagaccaaacatgcagta 27295

>gb|AY104679.1| Zea mays PCO142078 mRNA sequence
          Length = 1864

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 201  gtcgatctccgtctgcaggtcctt 224
            ||||||| ||||||||||||||||
Sbjct: 1134 gtcgatcgccgtctgcaggtcctt 1111

>emb|AL928823.11| Mouse DNA sequence from clone RP23-472P9 on chromosome 2, complete
             sequence
          Length = 100839

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    gcagtagtaacaggaggtct 42
             ||||||||||||||||||||
Sbjct: 23636 gcagtagtaacaggaggtct 23655

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 186     ctcgacctcgccgtcgtcga 205
               ||||||||||||||||||||
Sbjct: 2640089 ctcgacctcgccgtcgtcga 2640070


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,030,034
Number of Sequences: 3902068
Number of extensions: 2030034
Number of successful extensions: 42531
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42401
Number of HSP's gapped (non-prelim): 130
length of query: 240
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 218
effective length of database: 17,147,199,772
effective search space: 3738089550296
effective search space used: 3738089550296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)