>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC|
           1.1.1.86) (Acetohydroxy-acid reductoisomerase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 591

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 43/49 (87%), Positives = 46/49 (93%)
 Frame = -1

Query: 332 APINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELRQSA 186
           A IN+DLISNF SDPVHGAIEVCA+LRPTVDISV ADADFVRPELRQS+
Sbjct: 542 AAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSS 590

>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC|
           1.1.1.86) (Acetohydroxy-acid reductoisomerase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 581

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 42/47 (89%), Positives = 45/47 (95%)
 Frame = -1

Query: 332 APINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELRQ 192
           APINQDLISNF+SDPVHGAI+VCAELRPT+DISV A ADFVRPELRQ
Sbjct: 532 APINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQ 578

>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC|
           1.1.1.86) (Acetohydroxy-acid reductoisomerase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 595

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = -1

Query: 332 APINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELRQS 189
           APINQDLISNF+SDPVH AI VCA+LRP+VDISVTADADFVRPELRQ+
Sbjct: 548 APINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQA 595

>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 150 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 254
           HP+ +  SDP L R P L  H  + G     D GP
Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896

>FLO1_YEAST (P32768) Flocculation protein FLO1 precursor (Flocculin-1)|
          Length = 1537

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +1

Query: 37   NGDDSLDPTPTGGSLYLTQQLTGSNS*SHAYITVHELSTHQKTTLQTRI*ADCRSSGRTK 216
            + + S  PT +  SL L    T S   + +        T ++TTL T     C S   T+
Sbjct: 1191 SSESSKSPTYSSSSLPLVTSATTSQETASSLPPATTTKTSEQTTLVTV--TSCESHVCTE 1248

Query: 217  SAS-AVTEMSTVGLSSAQTSMAPW 285
            S S A+   +TV +S   T    W
Sbjct: 1249 SISPAIVSTATVTVSGVTTEYTTW 1272

>UBP2_HUMAN (O75604) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 2)
           (Ubiquitin-specific-processing protease 2)
           (Deubiquitinating enzyme 2) (41 kDa ubiquitin-specific
           protease)
          Length = 605

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +1

Query: 106 SNS*SHAYITVHELSTHQKTTLQTRI*ADCRSSG----RTKSASAVTEMSTVGLSSAQTS 273
           S + +HA   ++ +S H  TT+     A CRS G     T + S+VT MS+   S  +TS
Sbjct: 533 SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSS---SQVRTS 589

Query: 274 MA 279
            A
Sbjct: 590 DA 591

>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 21/88 (23%), Positives = 38/88 (43%)
 Frame = +1

Query: 16  NFYYSRRNGDDSLDPTPTGGSLYLTQQLTGSNS*SHAYITVHELSTHQKTTLQTRI*ADC 195
           N Y    +   S++P P    L+  QQ+T + S + A       S+     +Q    +  
Sbjct: 472 NLYQHSTSAGSSVNPPPPPPPLF-QQQMTTTTSSAAASFVEQPWSSSSSRAIQPATTSAS 530

Query: 196 RSSGRTKSASAVTEMSTVGLSSAQTSMA 279
            SS  + S+ A   +S +G +S+  + A
Sbjct: 531 SSSSSSASSPAAAVVSAIGSASSPAASA 558

>TNNC_HALRO (P06706) Troponin C, body wall muscle|
          Length = 155

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 189 RLPELRTHEVSIG-RHRDVDG---GPQLGADLDGAVDGVRHEVADEVLVDG 329
           ++PE    E+S   R  D+DG   G +L A LDG  + V     DE++ DG
Sbjct: 84  KIPEREEKELSEAFRLFDLDGDGIGDELKAALDGTGENVETWEVDEMMADG 134

>AKA10_HUMAN (O43572) A kinase anchor protein 10, mitochondrial precursor|
           (Protein kinase A-anchoring protein 10) (PRKA10) (Dual
           specificity A kinase-anchoring protein 2) (D-AKAP-2)
          Length = 662

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 23  IIREETETTHSIQPQQGALST*HSSSQVQTASRTHTLQSMNCP--PIKK 163
           ++ +E ++ HS++ +     T   S + Q +S T T+ S N P  P+K+
Sbjct: 237 LLSQECDSAHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKE 285

>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 150 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 254
           HP+ +  +DP L R P L  H  + G     D GP
Sbjct: 853 HPTGSRLADPRLSRDPRLTRHVEASGGSGPGDSGP 887

>VIE3_HCMVT (P06434) 30 kDa immediate-early protein 2 (IE2)|
          Length = 280

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 95  SSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARS 217
           S   +  S TH L  MN PP+   L RP+   ++ +    S
Sbjct: 58  SGTPRVTSPTHPLSQMNHPPLPDPLGRPDEDSSSSSSSCSS 98

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 21/47 (44%), Positives = 24/47 (51%)
 Frame = +3

Query: 132  YSP*IVHPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGPQLGADL 272
            YS   V P +N    P   R    RT E S+GR+ DVD G  LG DL
Sbjct: 2147 YSLERVPPEENQRHHPRR-RERAHRTSERSLGRYTDVDTG--LGTDL 2190

>VIE2_HCMVT (P06435) 45 kDa immediate-early protein 2 (IE2)|
          Length = 410

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 95  SSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARS 217
           S   +  S TH L  MN PP+   L RP+   ++ +    S
Sbjct: 58  SGTPRVTSPTHPLSQMNHPPLPDPLGRPDEDSSSSSSSCSS 98

>DYHC_DROME (P37276) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4639

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 335 DAPINQDLISNFMSDPVHGAIEV 267
           D P+NQD I  F+SDP   A+ V
Sbjct: 53  DDPVNQDTIRKFLSDPQVQALYV 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,120,836
Number of Sequences: 219361
Number of extensions: 756971
Number of successful extensions: 2254
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2254
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)