| Clone Name | rbast16f01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP006148.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT41D09, TM0304, complete sequence Length = 114776 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 aactcatgaaagaaaattgc 83 |||||||||||||||||||| Sbjct: 101724 aactcatgaaagaaaattgc 101705
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 tggaagtactcaagtcttc 37 ||||||||||||||||||| Sbjct: 3752392 tggaagtactcaagtcttc 3752410
>emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in linkage group 10, complete sequence Length = 127879 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ctcatgaaagaaaattgcg 84 ||||||||||||||||||| Sbjct: 62667 ctcatgaaagaaaattgcg 62685
>gb|AC124487.3| Mus musculus BAC clone RP23-452B18 from chromosome 19, complete sequence Length = 195185 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 gtggaactcatgaaagaaa 78 ||||||||||||||||||| Sbjct: 89241 gtggaactcatgaaagaaa 89259
>emb|AL121900.26|HSBA379J5 Human DNA sequence from clone RP11-379J5 on chromosome 20 Contains the 3' end of the SEC23B gene for Sec23 (S. cerevisiae) homolog B, two novel genes, the 5' end of the HARS2 gene for histidyl-tRNA synthetase 2, a pseudogene similar to part of homeobox proteins and two CpG islands, complete sequence Length = 149933 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 ggaactcatgaaagaaaat 80 ||||||||||||||||||| Sbjct: 138327 ggaactcatgaaagaaaat 138309
>emb|X58791.1|VHLUXAB V.harveyi luxA and luxB genes for luciferase alpha and beta subunits Length = 2403 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gcatttatatggaagtact 28 ||||||||||||||||||| Sbjct: 2282 gcatttatatggaagtact 2300
>emb|BX537292.5| Zebrafish DNA sequence from clone CH211-213E17 in linkage group 10, complete sequence Length = 189446 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ctcatgaaagaaaattgcg 84 ||||||||||||||||||| Sbjct: 185945 ctcatgaaagaaaattgcg 185927
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 catcatgcatttatatgga 22 ||||||||||||||||||| Sbjct: 14589954 catcatgcatttatatgga 14589972
>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1294_G06 Length = 115468 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 catcatgcatttatatgga 22 ||||||||||||||||||| Sbjct: 88243 catcatgcatttatatgga 88261
>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0643D11 Length = 137525 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 catcatgcatttatatgga 22 ||||||||||||||||||| Sbjct: 11621 catcatgcatttatatgga 11639
>gb|AC165281.2| Mus musculus BAC clone RP24-502H6 from chromosome 13, complete sequence Length = 225816 Score = 38.2 bits (19), Expect = 4.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 aagtcttcaccactacact 48 ||||||||||||||||||| Sbjct: 97801 aagtcttcaccactacact 97819 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 958,461 Number of Sequences: 3902068 Number of extensions: 958461 Number of successful extensions: 67987 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67936 Number of HSP's gapped (non-prelim): 51 length of query: 106 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 85 effective length of database: 17,151,101,840 effective search space: 1457843656400 effective search space used: 1457843656400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)