ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast16e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome... 70 4e-09
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
3dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
4gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence 66 6e-08
5gb|AY106178.1| Zea mays PCO130453 mRNA sequence 58 2e-05

>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01,
              complete sequence
          Length = 173074

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                     
Query: 236    ctacggctgccacgcggcgagctgctggatgttcatggg 274
              |||||||||||| ||||||||||||||||||||||||||
Sbjct: 118007 ctacggctgccaggcggcgagctgctggatgttcatggg 117969



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                       
Query: 236      ctacggctgccacgcggcgagctgctggatgttcatggg 274
                |||||||||||| ||||||||||||||||||||||||||
Sbjct: 20446262 ctacggctgccaggcggcgagctgctggatgttcatggg 20446224



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>dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140K23, full
            insert sequence
          Length = 1556

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                   
Query: 236  ctacggctgccacgcggcgagctgctggatgttcatggg 274
            |||||||||||| ||||||||||||||||||||||||||
Sbjct: 1213 ctacggctgccaggcggcgagctgctggatgttcatggg 1175



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>gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence
          Length = 1302

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 238  acggctgccacgcggcgagctgctggatgttcatggg 274
            |||||||||| ||||||||||||||||||||||||||
Sbjct: 1047 acggctgccatgcggcgagctgctggatgttcatggg 1011



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>gb|AY106178.1| Zea mays PCO130453 mRNA sequence
          Length = 607

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 238 acggctgccacgcggcgagctgctggatgttcatggg 274
           |||||||||| ||||| ||||||||||||||||||||
Sbjct: 348 acggctgccatgcggcaagctgctggatgttcatggg 312


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,911,279
Number of Sequences: 3902068
Number of extensions: 1911279
Number of successful extensions: 32904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32889
Number of HSP's gapped (non-prelim): 15
length of query: 274
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 252
effective length of database: 17,147,199,772
effective search space: 4321094342544
effective search space used: 4321094342544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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