ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast16d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY312923.1| Timmia megapolitana trnK-psbA intergenic spacer, ... 42 1.1
2gb|AY312922.1| Tetraplodon mnioides trnK-psbA intergenic spacer,... 42 1.1
3gb|AY312919.1| Scouleria aquatica trnK-psbA intergenic spacer, p... 42 1.1
4gb|AY312918.1| Rhodobryum giganteum trnK-psbA intergenic spacer,... 42 1.1
5gb|AY312911.1| Orthotrichum lyellii trnK-psbA intergenic spacer,... 42 1.1
6gb|AY312909.1| Oedipodium griffithianum trnK-psbA intergenic spa... 42 1.1
7gb|AY312908.1| Mnium hornum trnK-psbA intergenic spacer, partial... 42 1.1
8gb|AY312905.1| Hedwigia ciliata trnK-psbA intergenic spacer, par... 42 1.1
9gb|AY312901.1| Entosthodon laevis trnK-psbA intergenic spacer, p... 42 1.1
10gb|AY312897.1| Buxbaumia aphylla trnK-psbA intergenic spacer, pa... 42 1.1
11gb|AY312896.1| Brachythecium salebrosum trnK-psbA intergenic spa... 42 1.1
12gb|AY312894.1| Aulacomnium turgidum trnK-psbA intergenic spacer,... 42 1.1
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.1
14gb|BC051413.1| Mus musculus calcium channel, voltage-dependent, ... 42 1.1
15gb|BC043482.1| Mus musculus calcium channel, voltage-dependent, ... 42 1.1
16gb|AY294643.1| Phalaris minor PsbA gene, partial cds; chloroplas... 42 1.1
17emb|AJ579852.2|MMU579852 Mus musculus mRNA for L-type dihydropyr... 42 1.1
18gb|AY211527.2| Phalaris minor PsbA gene, partial cds; chloroplas... 42 1.1
19gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nippon... 42 1.1
20dbj|AK044695.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 42 1.1
21gb|BC057653.1| Mus musculus calcium channel, voltage-dependent, ... 42 1.1
22gb|AF363674.1|AF363674 Lolium perenne herbicide binding protein ... 42 1.1
23dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
24ref|NM_019582.1| Mus musculus calcium channel, voltage-dependent... 42 1.1
25gb|AF192497.1|AF192497 Mus musculus L-type dihydropyridine-sensi... 42 1.1
26gb|AY163147.1| Plagiobryum zieri photosystem II protein gene, co... 42 1.1
27gb|AY163146.1| Haplodontium reticulatum photosystem II protein g... 42 1.1
28gb|AY163145.1| Haplodontium megalocarpum photosystem II protein ... 42 1.1
29gb|AY163144.1| Bryum ruderale photosystem II protein gene, compl... 42 1.1
30gb|AY163143.1| Bryum radiculosum photosystem II protein gene, co... 42 1.1
31gb|AY163142.1| Bryum pseudotriquetrum photosystem II protein gen... 42 1.1
32gb|AY163141.1| Bryum pachytheca photosystem II protein gene, com... 42 1.1
33gb|AY163140.1| Bryum orthothecium photosystem II protein gene, c... 42 1.1
34gb|AY163139.1| Bryum meesioides photosystem II protein gene, com... 42 1.1
35gb|AY163138.1| Bryum lisae photosystem II protein gene, complete... 42 1.1
36gb|AY163137.1| Bryum gemmiferum photosystem II protein gene, com... 42 1.1
37gb|AY163136.1| Bryum funckii photosystem II protein gene, comple... 42 1.1
38gb|AY163135.1| Bryum donianum photosystem II protein gene, compl... 42 1.1
39gb|AY163134.1| Bryum cyclophyllum photosystem II protein gene, c... 42 1.1
40gb|AY163133.1| Bryum coronatum photosystem II protein gene, comp... 42 1.1
41gb|AY163132.1| Bryum clavatum photosystem II protein gene, compl... 42 1.1
42gb|AY163131.1| Bryum cellulare photosystem II protein gene, comp... 42 1.1
43gb|AY163130.1| Bryum caucasicum photosystem II protein gene, com... 42 1.1
44gb|AY163128.1| Bryum caespiticium photosystem II protein gene, c... 42 1.1
45gb|AY163127.1| Bryum bicolor photosystem II protein gene, comple... 42 1.1
46gb|AY163126.1| Bryum argenteum photosystem II protein gene, comp... 42 1.1
47gb|AY163125.1| Bryum alpinum photosystem II protein gene, comple... 42 1.1
48gb|AY163124.1| Bryum algovicum photosystem II protein gene, comp... 42 1.1
49gb|AY163122.1| Brachymenium preissianum photosystem II protein g... 42 1.1
50gb|AY163121.1| Brachymenium philonotula photosystem II protein g... 42 1.1
51gb|AY163119.1| Brachymenium acuminatum photosystem II protein ge... 42 1.1
52gb|AY163118.1| Anomobryum prostratum photosystem II protein gene... 42 1.1
53gb|AY163117.1| Anomobryum julaceum photosystem II protein gene, ... 42 1.1
54gb|AY163116.1| Anomobryum humillimum photosystem II protein gene... 42 1.1
55gb|AY163115.1| Anomobryum conicum photosystem II protein gene, c... 42 1.1
56dbj|AK104842.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
57dbj|AK104620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
58dbj|AK104286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
59dbj|AK070905.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
60dbj|AK066899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
61dbj|AK061289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
62gb|AY562223.2| Plagiomnium ellipticum psbA-trnK intergenic space... 42 1.1
63gb|AY562221.2| Plagiomnium insigne psbA-trnK intergenic spacer, ... 42 1.1
64gb|AY562222.2| Plagiomnium medium psbA-trnK intergenic spacer, p... 42 1.1
65dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast ... 42 1.1
66gb|AC103405.14| Mus musculus chromosome 19, clone RP23-98J4, com... 40 4.3
67gb|AC161217.7| Mus musculus chromosome 8, clone RP23-80D9, compl... 40 4.3
68gb|AC124170.3| Mus musculus BAC clone RP23-155H5 from 8, complet... 40 4.3
69gb|AC073486.5| Homo sapiens BAC clone RP11-807H17 from 7, comple... 40 4.3
70gb|AC100092.9| Mus musculus chromosome 3, clone RP23-37H10, comp... 40 4.3
71emb|AL133413.5| Human DNA sequence from clone RP11-54K22 on chro... 40 4.3
72emb|AL020991.1|HS884M20 Human DNA sequence from clone RP5-884M20... 40 4.3
73gb|AC063977.6| Homo sapiens chromosome 19 clone CTD-3187F8, comp... 40 4.3
74gb|AC108162.4| Homo sapiens BAC clone RP11-686G17 from 4, comple... 40 4.3
75gb|AC152505.2| Pan troglodytes BAC clone RP43-113N22 from chromo... 40 4.3
76gb|AC084445.1|AC084445 Caenorhabditis briggsae cosmid CB018A07, ... 40 4.3
77emb|Z83821.1|HS296K21 Human DNA sequence from clone RP1-296K21 o... 40 4.3
78emb|AL591388.9| Zebrafish DNA sequence from clone BUSM1-255P14 i... 40 4.3
79emb|CR936437.14| Zebrafish DNA sequence from clone CH211-197I23 ... 40 4.3
80emb|AL845519.6| Mouse DNA sequence from clone RP23-295F2 on chro... 40 4.3 
>gb|AY312923.1| Timmia megapolitana trnK-psbA intergenic spacer, partial sequence;
           photosystem II 32 kDa protein (psbA) gene, complete cds;
           psbA-trnH intergenic spacer, complete sequence; and
           tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1469

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 716 cagtagcagccgcaacaggag 696
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>gb|AY312922.1| Tetraplodon mnioides trnK-psbA intergenic spacer, partial sequence;
           photosystem II 32 kDa protein (psbA) gene, complete cds;
           psbA-trnH intergenic spacer, complete sequence; and
           tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1500

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 707 cagtagcagccgcaacaggag 687
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>gb|AY312919.1| Scouleria aquatica trnK-psbA intergenic spacer, partial sequence;
           photosystem II 32 kDa protein (psbA) gene, complete cds;
           psbA-trnH intergenic spacer, complete sequence; and
           tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1406

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 623 cagtagcagccgcaacaggag 603
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>gb|AY312918.1| Rhodobryum giganteum trnK-psbA intergenic spacer, partial sequence;
           photosystem II 32 kDa protein (psbA) gene, complete cds;
           psbA-trnH intergenic spacer, complete sequence; and
           tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1488

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 710 cagtagcagccgcaacaggag 690
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>gb|AY312911.1| Orthotrichum lyellii trnK-psbA intergenic spacer, partial sequence;
           photosystem II 32 kDa protein (psbA) gene, complete cds;
           psbA-trnH intergenic spacer, complete sequence; and
           tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1448

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 679 cagtagcagccgcaacaggag 659
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>gb|AY312909.1| Oedipodium griffithianum trnK-psbA intergenic spacer, partial
           sequence; photosystem II 32 kDa protein (psbA) gene,
           complete cds; psbA-trnH intergenic spacer, complete
           sequence; and tRNA-His (trnH) gene, partial sequence;
           chloroplast
          Length = 1486

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 717 cagtagcagccgcaacaggag 697
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>gb|AY312908.1| Mnium hornum trnK-psbA intergenic spacer, partial sequence;
           photosystem II 32 kDa protein (psbA) gene, complete cds;
           psbA-trnH intergenic spacer, complete sequence; and
           tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1455

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 675 cagtagcagccgcaacaggag 655
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>gb|AY312905.1| Hedwigia ciliata trnK-psbA intergenic spacer, partial sequence;
           photosystem II 32 kDa protein (psbA) gene, complete cds;
           psbA-trnH intergenic spacer, complete sequence; and
           tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1517

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 729 cagtagcagccgcaacaggag 709
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>gb|AY312901.1| Entosthodon laevis trnK-psbA intergenic spacer, partial sequence;
           photosystem II 32 kDa protein (psbA) gene, complete cds;
           psbA-trnH intergenic spacer, complete sequence; and
           tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1426

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 636 cagtagcagccgcaacaggag 616
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>gb|AY312897.1| Buxbaumia aphylla trnK-psbA intergenic spacer, partial sequence;
           photosystem II 32 kDa protein (psbA) gene, complete cds;
           psbA-trnH intergenic spacer, complete sequence; and
           tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1441

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 624 cagtagcagccgcaacaggag 604
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>gb|AY312896.1| Brachythecium salebrosum trnK-psbA intergenic spacer, partial
           sequence; photosystem II 32 kDa protein (psbA) gene,
           complete cds; psbA-trnH intergenic spacer, complete
           sequence; and tRNA-His (trnH) gene, partial sequence;
           chloroplast
          Length = 1479

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 698 cagtagcagccgcaacaggag 678
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>gb|AY312894.1| Aulacomnium turgidum trnK-psbA intergenic spacer, partial sequence;
           photosystem II 32 kDa protein (psbA) gene, complete cds;
           psbA-trnH intergenic spacer, complete sequence; and
           tRNA-His (trnH) gene, partial sequence; chloroplast
          Length = 1493

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 718 cagtagcagccgcaacaggag 698
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 198     cctagtctactcccagccttgagcagcgggttg 230
               ||||| ||| ||||||||||||||||| |||||
Sbjct: 4318716 cctagcctaatcccagccttgagcagctggttg 4318748
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>gb|BC051413.1| Mus musculus calcium channel, voltage-dependent, alpha 1F subunit,
            mRNA (cDNA clone IMAGE:6493332), containing frame-shift
            errors
          Length = 6035

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 231  cacgccagcctcccagccagt 251
            |||||||||||||||||||||
Sbjct: 1416 cacgccagcctcccagccagt 1436
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>gb|BC043482.1| Mus musculus calcium channel, voltage-dependent, alpha 1F subunit,
            mRNA (cDNA clone IMAGE:5369391), containing frame-shift
            errors
          Length = 6636

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 231  cacgccagcctcccagccagt 251
            |||||||||||||||||||||
Sbjct: 1843 cacgccagcctcccagccagt 1863
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>gb|AY294643.1| Phalaris minor PsbA gene, partial cds; chloroplast gene for
           chloroplast product
          Length = 791

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 352 cagtagcagccgcaacaggag 332
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>emb|AJ579852.2|MMU579852 Mus musculus mRNA for L-type dihydropyridine-sensitive calcium
            channel alpha-1f subunit (Cav1.4 gene), strain C57Bl6
          Length = 5955

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 231  cacgccagcctcccagccagt 251
            |||||||||||||||||||||
Sbjct: 1399 cacgccagcctcccagccagt 1419
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>gb|AY211527.2| Phalaris minor PsbA gene, partial cds; chloroplast gene for
           chloroplast product
          Length = 791

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 352 cagtagcagccgcaacaggag 332
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>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032G08, from Chromosome 3, complete sequence
          Length = 122052

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 198    cctagtctactcccagccttgagcagcgggttg 230
              ||||| ||| ||||||||||||||||| |||||
Sbjct: 107781 cctagcctaatcccagccttgagcagctggttg 107749
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>dbj|AK044695.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930034B14 product:calcium channel,
            voltage-dependent, alpha 1F subunit, full insert sequence
          Length = 2560

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 231  cacgccagcctcccagccagt 251
            |||||||||||||||||||||
Sbjct: 1426 cacgccagcctcccagccagt 1446
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>gb|BC057653.1| Mus musculus calcium channel, voltage-dependent, alpha 1F subunit,
            mRNA (cDNA clone IMAGE:4501329)
          Length = 3849

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 231  cacgccagcctcccagccagt 251
            |||||||||||||||||||||
Sbjct: 2467 cacgccagcctcccagccagt 2487
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>gb|AF363674.1|AF363674 Lolium perenne herbicide binding protein D1 (psbA) mRNA, partial
           cds; chloroplast gene for chloroplast product
          Length = 945

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 301 cagtagcagccgcaacaggag 281
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 198     cctagtctactcccagccttgagcagcgggttg 230
               ||||| ||| ||||||||||||||||| |||||
Sbjct: 4318831 cctagcctaatcccagccttgagcagctggttg 4318863
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>ref|NM_019582.1| Mus musculus calcium channel, voltage-dependent, alpha 1F subunit
            (Cacna1f), mRNA
          Length = 6114

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 231  cacgccagcctcccagccagt 251
            |||||||||||||||||||||
Sbjct: 1447 cacgccagcctcccagccagt 1467
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>gb|AF192497.1|AF192497 Mus musculus L-type dihydropyridine-sensitive calcium channel
            alpha-1f subunit (Cacna1f) mRNA, complete cds
          Length = 6114

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 231  cacgccagcctcccagccagt 251
            |||||||||||||||||||||
Sbjct: 1447 cacgccagcctcccagccagt 1467
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>gb|AY163147.1| Plagiobryum zieri photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1477

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 692 cagtagcagccgcaacaggag 672
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>gb|AY163146.1| Haplodontium reticulatum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1493

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 718 cagtagcagccgcaacaggag 698
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>gb|AY163145.1| Haplodontium megalocarpum photosystem II protein gene, complete
           cds; chloroplast gene for chloroplast product
          Length = 1482

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 717 cagtagcagccgcaacaggag 697
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>gb|AY163144.1| Bryum ruderale photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1506

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 719 cagtagcagccgcaacaggag 699
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>gb|AY163143.1| Bryum radiculosum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1514

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 728 cagtagcagccgcaacaggag 708
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>gb|AY163142.1| Bryum pseudotriquetrum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1490

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 715 cagtagcagccgcaacaggag 695
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>gb|AY163141.1| Bryum pachytheca photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1439

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 654 cagtagcagccgcaacaggag 634
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>gb|AY163140.1| Bryum orthothecium photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1510

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 729 cagtagcagccgcaacaggag 709
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>gb|AY163139.1| Bryum meesioides photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1377

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 721 cagtagcagccgcaacaggag 701
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>gb|AY163138.1| Bryum lisae photosystem II protein gene, complete cds; chloroplast
           gene for chloroplast product
          Length = 1433

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 652 cagtagcagccgcaacaggag 632
to top
>gb|AY163137.1| Bryum gemmiferum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1429

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 641 cagtagcagccgcaacaggag 621
to top
>gb|AY163136.1| Bryum funckii photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1494

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 719 cagtagcagccgcaacaggag 699
to top
>gb|AY163135.1| Bryum donianum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1507

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 722 cagtagcagccgcaacaggag 702
to top
>gb|AY163134.1| Bryum cyclophyllum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1504

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 718 cagtagcagccgcaacaggag 698
to top
>gb|AY163133.1| Bryum coronatum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1477

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 720 cagtagcagccgcaacaggag 700
to top
>gb|AY163132.1| Bryum clavatum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1481

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 720 cagtagcagccgcaacaggag 700
to top
>gb|AY163131.1| Bryum cellulare photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1446

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 659 cagtagcagccgcaacaggag 639
to top
>gb|AY163130.1| Bryum caucasicum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1424

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 636 cagtagcagccgcaacaggag 616
to top
>gb|AY163128.1| Bryum caespiticium photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1458

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 679 cagtagcagccgcaacaggag 659
to top
>gb|AY163127.1| Bryum bicolor photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1491

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 719 cagtagcagccgcaacaggag 699
to top
>gb|AY163126.1| Bryum argenteum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1446

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 659 cagtagcagccgcaacaggag 639
to top
>gb|AY163125.1| Bryum alpinum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1505

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 719 cagtagcagccgcaacaggag 699
to top
>gb|AY163124.1| Bryum algovicum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1482

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 700 cagtagcagccgcaacaggag 680
to top
>gb|AY163122.1| Brachymenium preissianum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1500

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 718 cagtagcagccgcaacaggag 698
to top
>gb|AY163121.1| Brachymenium philonotula photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1504

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 719 cagtagcagccgcaacaggag 699
to top
>gb|AY163119.1| Brachymenium acuminatum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1509

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 721 cagtagcagccgcaacaggag 701
to top
>gb|AY163118.1| Anomobryum prostratum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1505

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 721 cagtagcagccgcaacaggag 701
to top
>gb|AY163117.1| Anomobryum julaceum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1511

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 726 cagtagcagccgcaacaggag 706
to top
>gb|AY163116.1| Anomobryum humillimum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1446

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 676 cagtagcagccgcaacaggag 656
to top
>gb|AY163115.1| Anomobryum conicum photosystem II protein gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 1496

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 719 cagtagcagccgcaacaggag 699
to top
>dbj|AK104842.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F12, full
            insert sequence
          Length = 1310

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 198  cctagtctactcccagccttgagcagcgggttg 230
            ||||| ||| ||||||||||||||||| |||||
Sbjct: 1008 cctagcctaatcccagccttgagcagctggttg 976
to top
>dbj|AK104620.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F12, full
            insert sequence
          Length = 1276

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 198  cctagtctactcccagccttgagcagcgggttg 230
            ||||| ||| ||||||||||||||||| |||||
Sbjct: 1008 cctagcctaatcccagccttgagcagctggttg 976
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>dbj|AK104286.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D06, full
            insert sequence
          Length = 1223

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 198  cctagtctactcccagccttgagcagcgggttg 230
            ||||| ||| ||||||||||||||||| |||||
Sbjct: 1008 cctagcctaatcccagccttgagcagctggttg 976
to top
>dbj|AK070905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065M10, full
            insert sequence
          Length = 1320

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 198  cctagtctactcccagccttgagcagcgggttg 230
            ||||| ||| ||||||||||||||||| |||||
Sbjct: 1018 cctagcctaatcccagccttgagcagctggttg 986
to top
>dbj|AK066899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091K05, full
           insert sequence
          Length = 1182

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 198 cctagtctactcccagccttgagcagcgggttg 230
           ||||| ||| ||||||||||||||||| |||||
Sbjct: 956 cctagcctaatcccagccttgagcagctggttg 924
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>dbj|AK061289.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A03, full
           insert sequence
          Length = 1144

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 198 cctagtctactcccagccttgagcagcgggttg 230
           ||||| ||| ||||||||||||||||| |||||
Sbjct: 929 cctagcctaatcccagccttgagcagctggttg 897
to top
>gb|AY562223.2| Plagiomnium ellipticum psbA-trnK intergenic spacer, partial
           sequence; photosystem II protein D1 (psbA) gene,
           complete cds; and psbA-trnH intergenic spacer, complete
           sequence; chloroplast
          Length = 1407

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 683 cagtagcagccgcaacaggag 663
to top
>gb|AY562221.2| Plagiomnium insigne psbA-trnK intergenic spacer, partial sequence;
           photosystem II protein D1 (psbA) gene, complete cds; and
           psbA-trnH intergenic spacer, complete sequence;
           chloroplast
          Length = 1407

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 683 cagtagcagccgcaacaggag 663
to top
>gb|AY562222.2| Plagiomnium medium psbA-trnK intergenic spacer, partial sequence;
           photosystem II protein D1 (psbA) gene, complete cds; and
           psbA-trnH intergenic spacer, complete sequence;
           chloroplast
          Length = 1407

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 248 cagtagcagccgcaacaggag 268
           |||||||||||||||||||||
Sbjct: 683 cagtagcagccgcaacaggag 663
to top
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome
          Length = 122890

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 248   cagtagcagccgcaacaggag 268
             |||||||||||||||||||||
Sbjct: 53815 cagtagcagccgcaacaggag 53835
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>gb|AC103405.14| Mus musculus chromosome 19, clone RP23-98J4, complete sequence
          Length = 227074

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    cattcatgcctcacaaaata 162
              ||||||||||||||||||||
Sbjct: 218715 cattcatgcctcacaaaata 218734
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>gb|AC161217.7| Mus musculus chromosome 8, clone RP23-80D9, complete sequence
          Length = 234127

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    cagtctccctctccctcatc 41
             ||||||||||||||||||||
Sbjct: 96968 cagtctccctctccctcatc 96987
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>gb|AC124170.3| Mus musculus BAC clone RP23-155H5 from 8, complete sequence
          Length = 235023

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    cagtctccctctccctcatc 41
             ||||||||||||||||||||
Sbjct: 70888 cagtctccctctccctcatc 70869
to top
>gb|AC073486.5| Homo sapiens BAC clone RP11-807H17 from 7, complete sequence
          Length = 162911

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    tctccctctccctcatccca 44
             ||||||||||||||||||||
Sbjct: 55024 tctccctctccctcatccca 55043
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>gb|AC100092.9| Mus musculus chromosome 3, clone RP23-37H10, complete sequence
          Length = 186799

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      aacttataacacaactttca 23
              ||||||||||||||||||||
Sbjct: 141198 aacttataacacaactttca 141179
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>emb|AL133413.5| Human DNA sequence from clone RP11-54K22 on chromosome 9q34.11-34.2
             Contains a NADH dehydrogenase 3, mitochondrial (MTND3)
             pseudogene, complete sequence
          Length = 157790

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gtctccctctccctcatccc 43
             ||||||||||||||||||||
Sbjct: 73685 gtctccctctccctcatccc 73666
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>emb|AL020991.1|HS884M20 Human DNA sequence from clone RP5-884M20 on chromosome Xp11.21 Contains
              the ALAS2 gene for aminolevulinate, delta-, synthase 2
              (sideroblastic/hypochromic anemia), the APEX2 gene for APEX
              nuclease (apurinic/apyrimidinic endonuclease) 2, the 5' end
              of the PFKFB1 gene for
              6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 and a
              CpG island, complete sequence
          Length = 114173

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     gtctccctctccctcatccc 43
              ||||||||||||||||||||
Sbjct: 102803 gtctccctctccctcatccc 102784
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>gb|AC063977.6| Homo sapiens chromosome 19 clone CTD-3187F8, complete sequence
          Length = 212752

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    tagggtaaatatagcagact 124
              ||||||||||||||||||||
Sbjct: 138072 tagggtaaatatagcagact 138053
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>gb|AC108162.4| Homo sapiens BAC clone RP11-686G17 from 4, complete sequence
          Length = 185624

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    atcctaaaacacaagttttt 99
             ||||||||||||||||||||
Sbjct: 65483 atcctaaaacacaagttttt 65464
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>gb|AC152505.2| Pan troglodytes BAC clone RP43-113N22 from chromosome 7, complete
              sequence
          Length = 219580

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     tctccctctccctcatccca 44
              ||||||||||||||||||||
Sbjct: 182651 tctccctctccctcatccca 182670
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>gb|AC084445.1|AC084445 Caenorhabditis briggsae cosmid CB018A07, complete sequence
          Length = 62584

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    catctagaaaatcctaaaac 89
             ||||||||||||||||||||
Sbjct: 25907 catctagaaaatcctaaaac 25888
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>emb|Z83821.1|HS296K21 Human DNA sequence from clone RP1-296K21 on chromosome Xq13, complete
              sequence
          Length = 111994

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     gtctccctctccctcatccc 43
              ||||||||||||||||||||
Sbjct: 101290 gtctccctctccctcatccc 101271
to top
>emb|AL591388.9| Zebrafish DNA sequence from clone BUSM1-255P14 in linkage group 7,
             complete sequence
          Length = 97239

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    tctccctctccctcatcccaatgt 48
             ||||||||||||| ||||||||||
Sbjct: 48409 tctccctctcccttatcccaatgt 48386
to top
>emb|CR936437.14| Zebrafish DNA sequence from clone CH211-197I23 in linkage group 3,
             complete sequence
          Length = 96056

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    tctccctctccctcatcccaatgt 48
             ||||||||||||| ||||||||||
Sbjct: 78501 tctccctctcccttatcccaatgt 78478
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>emb|AL845519.6| Mouse DNA sequence from clone RP23-295F2 on chromosome 2, complete
             sequence
          Length = 164578

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    cagtctccctctccctcatc 41
             ||||||||||||||||||||
Sbjct: 36981 cagtctccctctccctcatc 36962


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,375,855
Number of Sequences: 3902068
Number of extensions: 3375855
Number of successful extensions: 148757
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148546
Number of HSP's gapped (non-prelim): 211
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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