ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast16c10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY589583.1| Triticum aestivum alpha-expansin EXPA1 mRNA, complete cds Length = 965 Score = 196 bits (99), Expect = 3e-47 Identities = 114/119 (95%) Strand = Plus / Minus Query: 174 aattaagagaactgcttgttggtgacgaaggtctggccgaagccccatccggcgggagcg 233 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct: 807 aattaagagaactgcttgttggtggcgaaggtctggccgaagccccagccggcgggagcg 748 Query: 234 acgttggggaaggtgatcgtctggccgtcggtgctggtgacctggaacgagaggctctg 292 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 747 gcgttggggaaggtgagcgtgtggccgtcggtgctggtgacctggaacgagaggctctg 689
>gb|AF332171.1| Zea mays alpha-expansin 3 (expA3) mRNA, complete cds Length = 1031 Score = 89.7 bits (45), Expect = 5e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 204 gtctggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggccgtcg 263 ||||| ||||| ||||| | |||||| ||||||| ||||||||| | |||||||||||| Sbjct: 824 gtctgaccgaacccccagctggcgggcgcgacgtcggggaaggttttggtctggccgtcg 765 Query: 264 gtgctggtgacctggaacgagaggctctg 292 ||||||||||||||||||| |||||||| Sbjct: 764 ctgctggtgacctggaacgacaggctctg 736
>ref|XM_474982.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 786 Score = 81.8 bits (41), Expect = 1e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggcc 259 ||||||||||||||| ||| || || || ||||||| | ||||||||| ||||||||| Sbjct: 762 gaaggtctggccgaacgtccagcccgccggggcgacgtcgaggaaggtgagcgtctggcc 703 Query: 260 gtcggtgctggtgacctggaacgagaggctctg 292 |||| |||||||||||| |||||| |||||||| Sbjct: 702 gtcgctgctggtgaccttgaacgacaggctctg 670
>gb|AF394543.1| Oryza sativa alpha-expansin OsEXPA1 (EXPA1) gene, complete cds Length = 2637 Score = 81.8 bits (41), Expect = 1e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggcc 259 ||||||||||||||| ||| || || || ||||||| | ||||||||| ||||||||| Sbjct: 2374 gaaggtctggccgaacgtccagcccgccggggcgacgtcgaggaaggtgagcgtctggcc 2315 Query: 260 gtcggtgctggtgacctggaacgagaggctctg 292 |||| |||||||||||| |||||| |||||||| Sbjct: 2314 gtcgctgctggtgaccttgaacgacaggctctg 2282
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 81.8 bits (41), Expect = 1e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggcc 259 ||||||||||||||| ||| || || || ||||||| | ||||||||| ||||||||| Sbjct: 8557884 gaaggtctggccgaacgtccagcccgccggggcgacgtcgaggaaggtgagcgtctggcc 8557825 Query: 260 gtcggtgctggtgacctggaacgagaggctctg 292 |||| |||||||||||| |||||| |||||||| Sbjct: 8557824 gtcgctgctggtgaccttgaacgacaggctctg 8557792
>emb|Y07782.1|OSEXPANSI Oryza sativa expansin (Os-EXP-1) mRNA, complete cds Length = 1081 Score = 81.8 bits (41), Expect = 1e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggcc 259 ||||||||||||||| ||| || || || ||||||| | ||||||||| ||||||||| Sbjct: 774 gaaggtctggccgaacgtccagcccgccggggcgacgtcgaggaaggtgagcgtctggcc 715 Query: 260 gtcggtgctggtgacctggaacgagaggctctg 292 |||| |||||||||||| |||||| |||||||| Sbjct: 714 gtcgctgctggtgaccttgaacgacaggctctg 682
>dbj|AK069548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022N21, full insert sequence Length = 1137 Score = 81.8 bits (41), Expect = 1e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggcc 259 ||||||||||||||| ||| || || || ||||||| | ||||||||| ||||||||| Sbjct: 805 gaaggtctggccgaacgtccagcccgccggggcgacgtcgaggaaggtgagcgtctggcc 746 Query: 260 gtcggtgctggtgacctggaacgagaggctctg 292 |||| |||||||||||| |||||| |||||||| Sbjct: 745 gtcgctgctggtgaccttgaacgacaggctctg 713
>emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065B15, complete sequence Length = 150007 Score = 81.8 bits (41), Expect = 1e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggcc 259 ||||||||||||||| ||| || || || ||||||| | ||||||||| ||||||||| Sbjct: 18327 gaaggtctggccgaacgtccagcccgccggggcgacgtcgaggaaggtgagcgtctggcc 18268 Query: 260 gtcggtgctggtgacctggaacgagaggctctg 292 |||| |||||||||||| |||||| |||||||| Sbjct: 18267 gtcgctgctggtgaccttgaacgacaggctctg 18235
>gb|AF394549.1| Oryza sativa alpha-expansin OsEXPA13 (EXPA13) gene, complete cds Length = 4996 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 207 tggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggccgtcggtg 266 |||||||| | |||||||| | || |||||||||||||| || ||||||||| |||||| Sbjct: 3594 tggccgaacctccatccggggcgaacgacgttggggaagacgagcgtctggccatcggtg 3535 Query: 267 ctggtgacctggaacgagaggc 288 |||||||| |||| ||||||| Sbjct: 3534 atggtgacccggaaggagaggc 3513
>gb|DQ061055.1| Oryza sativa (japonica cultivar-group) alpha-expansin 13 (EXPA13) mRNA, complete cds Length = 826 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 207 tggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggccgtcggtg 266 |||||||| | |||||||| | || |||||||||||||| || ||||||||| |||||| Sbjct: 758 tggccgaacctccatccggggcgaacgacgttggggaagacgagcgtctggccatcggtg 699 Query: 267 ctggtgacctggaacgagaggc 288 |||||||| |||| ||||||| Sbjct: 698 atggtgacccggaaggagaggc 677
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 207 tggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggccgtcggtg 266 |||||||| | |||||||| | || |||||||||||||| || ||||||||| |||||| Sbjct: 9552247 tggccgaacctccatccggggcgaacgacgttggggaagacgagcgtctggccatcggtg 9552188 Query: 267 ctggtgacctggaacgagaggc 288 |||||||| |||| ||||||| Sbjct: 9552187 atggtgacccggaaggagaggc 9552166
>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0693E08 Length = 157969 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 207 tggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggccgtcggtg 266 |||||||| | |||||||| | || |||||||||||||| || ||||||||| |||||| Sbjct: 16465 tggccgaacctccatccggggcgaacgacgttggggaagacgagcgtctggccatcggtg 16406 Query: 267 ctggtgacctggaacgagaggc 288 |||||||| |||| ||||||| Sbjct: 16405 atggtgacccggaaggagaggc 16384
>gb|AF539640.1| Musa acuminata expansin1 (EXP1) gene, complete cds Length = 1834 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggcc 259 ||||||||||||||| ||| ||||| || || |||||| | |||||||||| ||| Sbjct: 1800 gaaggtctggccgaactgccacccggcaggtgccacgttgtagctggtgatcgtcctgcc 1741 Query: 260 gtcggtgctggtgacctggaacgagaggctctgc 293 |||| || | || ||||||||||||||||||||| Sbjct: 1740 gtcgctggtagtcacctggaacgagaggctctgc 1707
>gb|AY083168.1| Musa acuminata expansin 1 (EXP1) mRNA, complete cds Length = 1098 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggcc 259 ||||||||||||||| ||| ||||| || || |||||| | |||||||||| ||| Sbjct: 809 gaaggtctggccgaactgccacccggcaggtgccacgttgtagctggtgatcgtcctgcc 750 Query: 260 gtcggtgctggtgacctggaacgagaggctctgc 293 |||| || | || ||||||||||||||||||||| Sbjct: 749 gtcgctggtagtcacctggaacgagaggctctgc 716
>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete sequence Length = 143507 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 252 gtctggccgtcggtgctggtgacctggaacgagaggctctgc 293 ||||||||||||||| ||||||| |||||||||||| |||| Sbjct: 85861 gtctggccgtcggtggcggtgacccggaacgagaggccctgc 85820
>gb|DQ061068.1| Oryza sativa (japonica cultivar-group) alpha-expansin 29 (EXPA29) mRNA, partial cds Length = 708 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 252 gtctggccgtcggtgctggtgacctggaacgagaggctctgc 293 ||||||||||||||| ||||||| |||||||||||| |||| Sbjct: 645 gtctggccgtcggtggcggtgacccggaacgagaggccctgc 604
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 252 gtctggccgtcggtgctggtgacctggaacgagaggctctgc 293 ||||||||||||||| ||||||| |||||||||||| |||| Sbjct: 30005164 gtctggccgtcggtggcggtgacccggaacgagaggccctgc 30005123
>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541C02 Length = 150660 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 252 gtctggccgtcggtgctggtgacctggaacgagaggctctgc 293 ||||||||||||||| ||||||| |||||||||||| |||| Sbjct: 81312 gtctggccgtcggtggcggtgacccggaacgagaggccctgc 81271
>dbj|AK070133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046O16, full insert sequence Length = 1071 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 252 gtctggccgtcggtgctggtgacctggaacgagaggctctgc 293 ||||||||||||||| ||||||| |||||||||||| |||| Sbjct: 791 gtctggccgtcggtggcggtgacccggaacgagaggccctgc 750
>ref|NM_185168.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1338 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Minus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgtt 238 ||||||||||||||||| |||||||||||| ||| |||| Sbjct: 798 cgaaggtctggccgaagtgccatccggcgggtgcggcgtt 759
>gb|AF247164.1| Oryza sativa alpha-expansin OsEXPA7 mRNA, complete cds Length = 1146 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Minus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgtt 238 ||||||||||||||||| |||||||||||| ||| |||| Sbjct: 798 cgaaggtctggccgaagtgccatccggcgggtgcggcgtt 759
>gb|AF394547.1| Oryza sativa alpha-expansin OsEXPA7 (EXPA7) gene, complete cds Length = 4985 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Minus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgtt 238 ||||||||||||||||| |||||||||||| ||| |||| Sbjct: 4160 cgaaggtctggccgaagtgccatccggcgggtgcggcgtt 4121
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Plus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgtt 238 ||||||||||||||||| |||||||||||| ||| |||| Sbjct: 34205035 cgaaggtctggccgaagtgccatccggcgggtgcggcgtt 34205074 Score = 40.1 bits (20), Expect = 3.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttg 239 ||||||||||||||| ||||||| || || ||||||||| Sbjct: 14734208 gaaggtctggccgaacgcccatcccgccggcgcgacgttg 14734169
>gb|AY083167.1| Malus x domestica expansin 2 (EXP2) mRNA, partial cds Length = 815 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 gccgtcggtgctggtgacctggaacgagaggctctg 292 ||||||| || ||||||||||||| ||||||||||| Sbjct: 512 gccgtcgctggtggtgacctggaaggagaggctctg 477
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Plus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgtt 238 ||||||||||||||||| |||||||||||| ||| |||| Sbjct: 34295507 cgaaggtctggccgaagtgccatccggcgggtgcggcgtt 34295546 Score = 40.1 bits (20), Expect = 3.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttg 239 ||||||||||||||| ||||||| || || ||||||||| Sbjct: 14728742 gaaggtctggccgaacgcccatcccgccggcgcgacgttg 14728703
>dbj|AB196979.1| Sagittaria pygmaea SpEXPA1 mRNA for expansin, complete cds Length = 1355 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 251 cgtctggccgtcggtgctggtgacctggaacgagag 286 |||||||||||||||| |||||||| |||| ||||| Sbjct: 875 cgtctggccgtcggtggtggtgacccggaaggagag 840
>dbj|AB093029.1| Pyrus communis PcExp2 mRNA for expansin, complete cds Length = 1153 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 gccgtcggtgctggtgacctggaacgagaggctctg 292 ||||||| || ||||||||||||| ||||||||||| Sbjct: 745 gccgtcgctggtggtgacctggaaggagaggctctg 710
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Minus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgtt 238 ||||||||||||||||| |||||||||||| ||| |||| Sbjct: 129963 cgaaggtctggccgaagtgccatccggcgggtgcggcgtt 129924
>dbj|AB099927.1| Malus x domestica MdEXPA2 mRNA for expansin, partial cds Length = 870 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 gccgtcggtgctggtgacctggaacgagaggctctg 292 ||||||| || ||||||||||||| ||||||||||| Sbjct: 588 gccgtcgctggtggtgacctggaaggagaggctctg 553
>dbj|AK119215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G10, full insert sequence Length = 1366 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Minus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgtt 238 ||||||||||||||||| |||||||||||| ||| |||| Sbjct: 817 cgaaggtctggccgaagtgccatccggcgggtgcggcgtt 778
>dbj|AK101784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065B20, full insert sequence Length = 1319 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Minus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgtt 238 ||||||||||||||||| |||||||||||| ||| |||| Sbjct: 994 cgaaggtctggccgaagtgccatccggcgggtgcggcgtt 955
>dbj|AK063455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G06, full insert sequence Length = 1653 Score = 48.1 bits (24), Expect = 0.016 Identities = 36/40 (90%) Strand = Plus / Minus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgtt 238 ||||||||||||||||| |||||||||||| ||| |||| Sbjct: 329 cgaaggtctggccgaagtgccatccggcgggtgcggcgtt 290
>gb|AY589584.1| Triticum aestivum alpha-expansin EXPA2 mRNA, complete cds Length = 1142 Score = 44.1 bits (22), Expect = 0.25 Identities = 76/94 (80%) Strand = Plus / Minus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgttggggaaggtgatcgtctggc 258 ||||||||||||||||| ||| |||||||| ||| ||||| | ||||| || ||| Sbjct: 789 cgaaggtctggccgaaggaccagccggcgggggcggcgttgttgctggtgacggtgcggc 730 Query: 259 cgtcggtgctggtgacctggaacgagaggctctg 292 ||||| || ||||||| |||| ||||||||||| Sbjct: 729 cgtcgctgagggtgacccggaaggagaggctctg 696
>gb|AY543534.1| Triticum aestivum expansin EXPA8 mRNA, complete cds Length = 1005 Score = 44.1 bits (22), Expect = 0.25 Identities = 34/38 (89%) Strand = Plus / Minus Query: 202 aggtctggccgaagccccatccggcgggagcgacgttg 239 ||||||||||||||| ||| |||| |||||| |||||| Sbjct: 799 aggtctggccgaagctccaaccggagggagccacgttg 762
>ref|XM_475418.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 741 Score = 42.1 bits (21), Expect = 0.97 Identities = 33/37 (89%) Strand = Plus / Minus Query: 256 ggccgtcggtgctggtgacctggaacgagaggctctg 292 |||||||| || |||||||||||| ||||||||||| Sbjct: 667 ggccgtcgctggcggtgacctggaaggagaggctctg 631
>gb|BT016845.1| Zea mays clone Contig678 mRNA sequence Length = 1066 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 gaaggtctggccgaagcccca 220 ||||||||||||||||||||| Sbjct: 488 gaaggtctggccgaagcccca 508
>gb|AF394545.1| Oryza sativa alpha-expansin OsEXPA4 (EXPA4) gene, complete cds Length = 5851 Score = 42.1 bits (21), Expect = 0.97 Identities = 33/37 (89%) Strand = Plus / Minus Query: 256 ggccgtcggtgctggtgacctggaacgagaggctctg 292 |||||||| || |||||||||||| ||||||||||| Sbjct: 5092 ggccgtcgctggcggtgacctggaaggagaggctctg 5056
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0018K15, complete sequence Length = 168519 Score = 42.1 bits (21), Expect = 0.97 Identities = 33/37 (89%) Strand = Plus / Plus Query: 256 ggccgtcggtgctggtgacctggaacgagaggctctg 292 |||||||| || |||||||||||| ||||||||||| Sbjct: 37973 ggccgtcgctggcggtgacctggaaggagaggctctg 38009
>gb|AC119677.2| Homo sapiens chromosome 1 clone RP5-1066H13, complete sequence Length = 170397 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 6200 tcaagaaataccgtacacccc 6180
>emb|CR859200.1| Pongo pygmaeus mRNA; cDNA DKFZp459H0131 (from clone DKFZp459H0131) Length = 2101 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1590 tcaagaaataccgtacacccc 1570
>dbj|AK126386.1| Homo sapiens cDNA FLJ44422 fis, clone UTERU2003456 Length = 1965 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1600 tcaagaaataccgtacacccc 1580
>dbj|AK093786.1| Homo sapiens cDNA FLJ36467 fis, clone THYMU2015441 Length = 1897 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1532 tcaagaaataccgtacacccc 1512
>emb|CR602027.1| full-length cDNA clone CS0DG001YN24 of B cells (Ramos cell line) of Homo sapiens (human) Length = 560 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 193 tcaagaaataccgtacacccc 173
>emb|CR601428.1| full-length cDNA clone CS0DF026YB20 of Fetal brain of Homo sapiens (human) Length = 1013 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 697 tcaagaaataccgtacacccc 677
>emb|CR590607.1| full-length cDNA clone CS0DF007YA10 of Fetal brain of Homo sapiens (human) Length = 1939 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1583 tcaagaaataccgtacacccc 1563
>gb|S74703.1| histone H1 transcription factor large subunit 2A=glutamine-rich CCAAT-binding transcription factor [human, HeLa cells, mRNA, 1862 nt] Length = 1862 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1497 tcaagaaataccgtacacccc 1477
>gb|AF350938.1|AF350938 Prunus cerasus expansin (EXP3) mRNA, complete cds Length = 1172 Score = 42.1 bits (21), Expect = 0.97 Identities = 33/37 (89%) Strand = Plus / Minus Query: 256 ggccgtcggtgctggtgacctggaacgagaggctctg 292 |||||||| || ||||||||| ||| ||||||||||| Sbjct: 738 ggccgtcgctggtggtgaccttgaaggagaggctctg 702
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.97 Identities = 33/37 (89%) Strand = Plus / Plus Query: 256 ggccgtcggtgctggtgacctggaacgagaggctctg 292 |||||||| || |||||||||||| ||||||||||| Sbjct: 23352437 ggccgtcgctggcggtgacctggaaggagaggctctg 23352473
>gb|AF191744.1|AF191744 Homo sapiens NFY-C variant DS2.8 mRNA, complete cds Length = 2160 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1792 tcaagaaataccgtacacccc 1772
>emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragment; clone MWG2088.uni Length = 363 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 cgtctggccgtcggtgctggtgacc 275 |||||||||||||||| |||||||| Sbjct: 61 cgtctggccgtcggtgatggtgacc 85
>dbj|AK000346.1| Homo sapiens cDNA FLJ20339 fis, clone HEP12350 Length = 2371 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1987 tcaagaaataccgtacacccc 1967
>dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G10, full insert sequence Length = 2440 Score = 42.1 bits (21), Expect = 0.97 Identities = 33/37 (89%) Strand = Plus / Minus Query: 256 ggccgtcggtgctggtgacctggaacgagaggctctg 292 |||||||| || |||||||||||| ||||||||||| Sbjct: 729 ggccgtcgctggcggtgacctggaaggagaggctctg 693
>dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029P10, full insert sequence Length = 1311 Score = 42.1 bits (21), Expect = 0.97 Identities = 33/37 (89%) Strand = Plus / Minus Query: 256 ggccgtcggtgctggtgacctggaacgagaggctctg 292 |||||||| || |||||||||||| ||||||||||| Sbjct: 730 ggccgtcgctggcggtgacctggaaggagaggctctg 694
>gb|U85246.1|OSU85246 Oryza sativa expansin (Os-EXP4) mRNA, complete cds Length = 1219 Score = 42.1 bits (21), Expect = 0.97 Identities = 33/37 (89%) Strand = Plus / Minus Query: 256 ggccgtcggtgctggtgacctggaacgagaggctctg 292 |||||||| || |||||||||||| ||||||||||| Sbjct: 720 ggccgtcgctggcggtgacctggaaggagaggctctg 684
>gb|AY543529.1| Triticum aestivum expansin EXPA3 mRNA, complete cds Length = 1106 Score = 42.1 bits (21), Expect = 0.97 Identities = 36/41 (87%) Strand = Plus / Minus Query: 199 cgaaggtctggccgaagccccatccggcgggagcgacgttg 239 ||||||||||||||||| ||| |||||||| ||| ||||| Sbjct: 792 cgaaggtctggccgaaggaccagccggcgggggcggcgttg 752
>dbj|AB208975.1| Homo sapiens mRNA for nuclear transcription factor Y, gamma variant protein Length = 1911 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1546 tcaagaaataccgtacacccc 1526
>ref|NM_014223.2| Homo sapiens nuclear transcription factor Y, gamma (NFYC), mRNA Length = 1965 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1601 tcaagaaataccgtacacccc 1581
>emb|Z74792.1|HSCBFC H.sapiens mRNA for CCAAT transcription binding factor subunit gamma Length = 1965 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1601 tcaagaaataccgtacacccc 1581
>dbj|D89986.1| Homo sapiens mRNA for HSM-2, complete cds Length = 1869 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 tcaagaaataccgtacacccc 122 ||||||||||||||||||||| Sbjct: 1480 tcaagaaataccgtacacccc 1460
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ccggagaagatttcacggcgacgc 63 |||| ||||||||||||||||||| Sbjct: 3351987 ccggtgaagatttcacggcgacgc 3351964
>ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Ozsa8506 predicted mRNA Length = 747 Score = 40.1 bits (20), Expect = 3.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttg 239 |||||||||||||||| ||| |||| ||| ||||||||| Sbjct: 729 gaaggtctggccgaaggaccagccggagggggcgacgttg 690
>ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA Length = 795 Score = 40.1 bits (20), Expect = 3.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttg 239 ||||||||||||||| ||||||| || || ||||||||| Sbjct: 774 gaaggtctggccgaacgcccatcccgccggcgcgacgttg 735
>gb|AF394556.1| Oryza sativa alpha-expansin OsEXPA21 (EXPA21) gene, complete cds Length = 3929 Score = 40.1 bits (20), Expect = 3.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttg 239 ||||||||||||||| ||||||| || || ||||||||| Sbjct: 3415 gaaggtctggccgaacgcccatcccgccggcgcgacgttg 3376
>gb|AC140913.25| Medicago truncatula clone mth2-26h9, complete sequence Length = 124828 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 aagagaactgcttgttggtg 197 |||||||||||||||||||| Sbjct: 60591 aagagaactgcttgttggtg 60572
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ccggagaagatttcacggcgacgc 63 |||| ||||||||||||||||||| Sbjct: 3357842 ccggtgaagatttcacggcgacgc 3357819
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ccggagaagatttcacggcgacgc 63 |||| ||||||||||||||||||| Sbjct: 3359675 ccggtgaagatttcacggcgacgc 3359652
>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete sequence Length = 130306 Score = 40.1 bits (20), Expect = 3.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttg 239 ||||||||||||||| ||||||| || || ||||||||| Sbjct: 73120 gaaggtctggccgaacgcccatcccgccggcgcgacgttg 73081
>gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha-expansin 11 (EXPA11) mRNA, partial cds Length = 798 Score = 40.1 bits (20), Expect = 3.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttg 239 |||||||||||||||| ||| |||| ||| ||||||||| Sbjct: 720 gaaggtctggccgaaggaccagccggagggggcgacgttg 681
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttg 239 |||||||||||||||| ||| |||| ||| ||||||||| Sbjct: 9525882 gaaggtctggccgaaggaccagccggagggggcgacgttg 9525843
>dbj|AB196980.1| Sagittaria pygmaea SpEXPA2 mRNA for expansin, complete cds Length = 1026 Score = 40.1 bits (20), Expect = 3.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 203 ggtctggccgaagccccatccggcgggagcgacgtt 238 |||||| ||||||| |||||| || ||||||||||| Sbjct: 855 ggtctgcccgaagctccatccagccggagcgacgtt 820
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ccggagaagatttcacggcgacgc 63 |||| ||||||||||||||||||| Sbjct: 3343104 ccggtgaagatttcacggcgacgc 3343081
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0424A08 Length = 151294 Score = 40.1 bits (20), Expect = 3.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 200 gaaggtctggccgaagccccatccggcgggagcgacgttg 239 |||||||||||||||| ||| |||| ||| ||||||||| Sbjct: 59311 gaaggtctggccgaaggaccagccggagggggcgacgttg 59272
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 256 ggccgtcggtgctggtgacctgga 279 ||||||||||| |||||||||||| Sbjct: 4666663 ggccgtcggtggtggtgacctgga 4666640
>gb|U18997.1|ECOUW67 Escherichia coli K-12 chromosomal region from 67.4 to 76.0 minutes Length = 372438 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ccggagaagatttcacggcgacgc 63 |||| ||||||||||||||||||| Sbjct: 140565 ccggtgaagatttcacggcgacgc 140542
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 ccggagaagatttcacggcgacgc 63 |||| ||||||||||||||||||| Sbjct: 3175317 ccggtgaagatttcacggcgacgc 3175340
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ccggagaagatttcacggcgacgc 63 |||| ||||||||||||||||||| Sbjct: 3538894 ccggtgaagatttcacggcgacgc 3538871
>gb|M18747.1|ECOGLTB E.coli gltB gene encoding glutamate synthase large and small subunits, complete cds Length = 6292 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ccggagaagatttcacggcgacgc 63 |||| ||||||||||||||||||| Sbjct: 5480 ccggtgaagatttcacggcgacgc 5457 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,202,943 Number of Sequences: 3902068 Number of extensions: 2202943 Number of successful extensions: 38237 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37903 Number of HSP's gapped (non-prelim): 326 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
