ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast16c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, com... 172 3e-40
2gb|AC111122.13| Mus musculus chromosome 7, clone RP23-230L8, com... 42 0.76
3gb|AC129908.4| Homo sapiens chromosome 18, clone RP11-1147P1, co... 42 0.76
4gb|AY106338.1| Zea mays PCO074336 mRNA sequence 42 0.76
5gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 0.76
6gb|AC117715.10| Mus musculus chromosome 7, clone RP23-62M19, com... 42 0.76
7gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
8gb|AC182808.1| Gasterosteus aculeatus clone VMRC28-105K03, compl... 40 3.0
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
10gb|AC016894.11| Homo sapiens BAC clone RP11-17D23 from 2, comple... 40 3.0

>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds
          Length = 1282

 Score =  172 bits (87), Expect = 3e-40
 Identities = 149/169 (88%), Gaps = 3/169 (1%)
 Strand = Plus / Minus

                                                                        
Query: 65   agtataggcgcgaacggacaccgactagccagcacgcccgtgcattggcattcaagcacg 124
            |||||| | |||||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct: 1201 agtatacgtgcgaacggacaccgaccagccagcacgcccgtgcattcgcattcaaggacg 1142

                                                                        
Query: 125  cacacatcaggccatggcgaccttgtcgtgcgagcccgggcggcggagcatctcgatcgc 184
            || ||||||| || |||||||||| ||||  |||||||| |||||||||||||||||| |
Sbjct: 1141 catacatcagcccttggcgaccttatcgtcggagcccggtcggcggagcatctcgatcac 1082

                                                             
Query: 185  cccagcgtaagaagcggacaaagaggaggaggacgggttgacgaggctg 233
            ||||||||   | |||||| |||| ||||||| ||||||||||||||||
Sbjct: 1081 cccagcgt---aggcggacgaagaagaggaggccgggttgacgaggctg 1036



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>gb|AC111122.13| Mus musculus chromosome 7, clone RP23-230L8, complete sequence
          Length = 175772

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 195    gaagcggacaaagaggaggaggacg 219
              |||| ||||||||||||||||||||
Sbjct: 163887 gaagaggacaaagaggaggaggacg 163863



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>gb|AC129908.4| Homo sapiens chromosome 18, clone RP11-1147P1, complete sequence
          Length = 190809

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 193   aagaagcggacaaagaggaggagga 217
             |||||| ||||||||||||||||||
Sbjct: 69828 aagaagaggacaaagaggaggagga 69804



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>gb|AY106338.1| Zea mays PCO074336 mRNA sequence
          Length = 849

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 16 gaaagggcatttcagcaaact 36
          |||||||||||||||||||||
Sbjct: 56 gaaagggcatttcagcaaact 36



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 118     aagcacgcacacatcaggcca 138
               |||||||||||||||||||||
Sbjct: 3726479 aagcacgcacacatcaggcca 3726459



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>gb|AC117715.10| Mus musculus chromosome 7, clone RP23-62M19, complete sequence
          Length = 234594

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 195    gaagcggacaaagaggaggaggacg 219
              |||| ||||||||||||||||||||
Sbjct: 166151 gaagaggacaaagaggaggaggacg 166175



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>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   ggacaaagaggaggaggacg 219
             ||||||||||||||||||||
Sbjct: 90024 ggacaaagaggaggaggacg 90005



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>gb|AC182808.1| Gasterosteus aculeatus clone VMRC28-105K03, complete sequence
          Length = 124886

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     ccatcggaaagggcatttca 29
              ||||||||||||||||||||
Sbjct: 120343 ccatcggaaagggcatttca 120324



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     ggacaaagaggaggaggacg 219
               ||||||||||||||||||||
Sbjct: 4203545 ggacaaagaggaggaggacg 4203526



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>gb|AC016894.11| Homo sapiens BAC clone RP11-17D23 from 2, complete sequence
          Length = 135160

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   gaagcggacaaagaggaggaggac 218
             |||| |||||||||||||||||||
Sbjct: 54758 gaagaggacaaagaggaggaggac 54781


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,081,581
Number of Sequences: 3902068
Number of extensions: 2081581
Number of successful extensions: 38704
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38652
Number of HSP's gapped (non-prelim): 51
length of query: 233
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 211
effective length of database: 17,147,199,772
effective search space: 3618059151892
effective search space used: 3618059151892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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