| Clone Name | rbast16c07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds Length = 1282 Score = 172 bits (87), Expect = 3e-40 Identities = 149/169 (88%), Gaps = 3/169 (1%) Strand = Plus / Minus Query: 65 agtataggcgcgaacggacaccgactagccagcacgcccgtgcattggcattcaagcacg 124 |||||| | |||||||||||||||| |||||||||||||||||||| ||||||||| ||| Sbjct: 1201 agtatacgtgcgaacggacaccgaccagccagcacgcccgtgcattcgcattcaaggacg 1142 Query: 125 cacacatcaggccatggcgaccttgtcgtgcgagcccgggcggcggagcatctcgatcgc 184 || ||||||| || |||||||||| |||| |||||||| |||||||||||||||||| | Sbjct: 1141 catacatcagcccttggcgaccttatcgtcggagcccggtcggcggagcatctcgatcac 1082 Query: 185 cccagcgtaagaagcggacaaagaggaggaggacgggttgacgaggctg 233 |||||||| | |||||| |||| ||||||| |||||||||||||||| Sbjct: 1081 cccagcgt---aggcggacgaagaagaggaggccgggttgacgaggctg 1036
>gb|AC111122.13| Mus musculus chromosome 7, clone RP23-230L8, complete sequence Length = 175772 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Minus Query: 195 gaagcggacaaagaggaggaggacg 219 |||| |||||||||||||||||||| Sbjct: 163887 gaagaggacaaagaggaggaggacg 163863
>gb|AC129908.4| Homo sapiens chromosome 18, clone RP11-1147P1, complete sequence Length = 190809 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Minus Query: 193 aagaagcggacaaagaggaggagga 217 |||||| |||||||||||||||||| Sbjct: 69828 aagaagaggacaaagaggaggagga 69804
>gb|AY106338.1| Zea mays PCO074336 mRNA sequence Length = 849 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 gaaagggcatttcagcaaact 36 ||||||||||||||||||||| Sbjct: 56 gaaagggcatttcagcaaact 36
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 aagcacgcacacatcaggcca 138 ||||||||||||||||||||| Sbjct: 3726479 aagcacgcacacatcaggcca 3726459
>gb|AC117715.10| Mus musculus chromosome 7, clone RP23-62M19, complete sequence Length = 234594 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Plus Query: 195 gaagcggacaaagaggaggaggacg 219 |||| |||||||||||||||||||| Sbjct: 166151 gaagaggacaaagaggaggaggacg 166175
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10, complete sequence Length = 156772 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ggacaaagaggaggaggacg 219 |||||||||||||||||||| Sbjct: 90024 ggacaaagaggaggaggacg 90005
>gb|AC182808.1| Gasterosteus aculeatus clone VMRC28-105K03, complete sequence Length = 124886 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 ccatcggaaagggcatttca 29 |||||||||||||||||||| Sbjct: 120343 ccatcggaaagggcatttca 120324
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ggacaaagaggaggaggacg 219 |||||||||||||||||||| Sbjct: 4203545 ggacaaagaggaggaggacg 4203526
>gb|AC016894.11| Homo sapiens BAC clone RP11-17D23 from 2, complete sequence Length = 135160 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 gaagcggacaaagaggaggaggac 218 |||| ||||||||||||||||||| Sbjct: 54758 gaagaggacaaagaggaggaggac 54781 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,081,581 Number of Sequences: 3902068 Number of extensions: 2081581 Number of successful extensions: 38704 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38652 Number of HSP's gapped (non-prelim): 51 length of query: 233 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 211 effective length of database: 17,147,199,772 effective search space: 3618059151892 effective search space used: 3618059151892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)