ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast16c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y15962.1|HVGLP1 Hordeum vulgare mRNA for germin-like protein 1 387 e-104
2emb|AJ319659.1|TAE319659 Triticum aestivum mRNA for adenosine di... 115 6e-23
3emb|AJ291451.1|HVU291451 Hordeum vulgare mRNA for adenosine diph... 115 6e-23
4ref|XM_482788.1| Oryza sativa (japonica cultivar-group), mRNA 92 9e-16
5ref|XM_507258.1| PREDICTED Oryza sativa (japonica cultivar-group... 92 9e-16
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 92 9e-16
7dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic D... 92 9e-16
8dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic D... 92 9e-16
9dbj|AK104729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 9e-16
10dbj|AK065284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 9e-16
11gb|AF051156.1|AF051156 Oryza sativa germin-like protein (GLP110)... 92 9e-16
12gb|AF032975.1|AF032975 Oryza sativa germin-like protein 5 (GER5)... 92 9e-16
13dbj|AB015593.1| Oryza sativa OsGLP1 gene for germin-like protein... 92 9e-16
14dbj|AB010876.1| Oryza sativa OsGLP1 mRNA for germin-like protein... 92 9e-16
15gb|AY394010.1| Zea mays germin-like protein (glp1) gene, promote... 84 2e-13
16gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, com... 46 0.047
17gb|AC137000.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.19
18gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete se... 44 0.19
19dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.19
20dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.19
21gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.19
22gb|AY299121.1| Xanthomonas oryzae bacteriophage Xp10 genomic DNA... 42 0.74
23emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 42 0.74
24gb|AC122011.3| Mus musculus chromosome 10 clone RP24-352E6, comp... 40 2.9
25gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 2.9
26gb|AC146316.3| Microcebus murinus clone CH257-437M14, complete s... 40 2.9
27gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, comp... 40 2.9
28ref|XM_598627.2| PREDICTED: Bos taurus similar to CG6454-PB, iso... 40 2.9
29gb|AC087514.2| Felis catus clone RP86-439N5, complete sequence 40 2.9
30gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 2.9
31gb|AC141846.3| Homo sapiens chromosome 16 clone CTB-55P19, compl... 40 2.9
32gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome... 40 2.9
33gb|AC100120.9| Mus musculus chromosome 10, clone RP23-40I1, comp... 40 2.9
34gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, com... 40 2.9
35emb|BX322613.6| Human DNA sequence from clone RP11-745D9 on chro... 40 2.9
36emb|AL590225.4| Human DNA sequence from clone RP11-358H7 on chro... 40 2.9
37emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chrom... 40 2.9
38emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C1... 40 2.9
39gb|AC161185.5| Mus musculus chromosome 5, clone RP23-297D16, com... 40 2.9
40emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 2.9
41gb|AC158753.8| Mus musculus chromosome 5, clone RP23-301E24, com... 40 2.9
42gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Can... 40 2.9
43gb|AC092721.2| Homo sapiens chromosome 16 clone RP11-514P19, com... 40 2.9
44gb|AC140831.3| Homo sapiens chromosome 16 clone RP11-907K12, com... 40 2.9
45gb|AC092374.4| Homo sapiens chromosome 16 clone RP11-637I8, comp... 40 2.9
46gb|AC026131.4| Homo sapiens chromosome 11, clone RP11-458M15, co... 40 2.9
47dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 2.9
48gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete... 40 2.9
49gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 2.9
50gb|DP000022.1| Microcebus murinus target 1 genomic scaffold 40 2.9 
>emb|Y15962.1|HVGLP1 Hordeum vulgare mRNA for germin-like protein 1
          Length = 833

 Score =  387 bits (195), Expect = e-104
 Identities = 202/203 (99%), Gaps = 1/203 (0%)
 Strand = Plus / Minus

                                                                       
Query: 27  ttgacaatcatcaaatgaaattgatatgaaaaattaaacacaacttgaaa-cagactcgg 85
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 814 ttgacaatcatcaaatgaaattgatatgaaaaattaaacacaacttgaaatcagactcgg 755

                                                                       
Query: 86  agttgacctcacaagcgcacgaacacatgcatcaaattaaaccgacacgctgacaccacg 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 agttgacctcacaagcgcacgaacacatgcatcaaattaaaccgacacgctgacaccacg 695

                                                                       
Query: 146 acgacctttgctgagaactgcttaattagccgctgccgccgagcacggacttgagcttct 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acgacctttgctgagaactgcttaattagccgctgccgccgagcacggacttgagcttct 635

                                  
Query: 206 tcacctgcgcgtcgtccaagaag 228
           |||||||||||||||||||||||
Sbjct: 634 tcacctgcgcgtcgtccaagaag 612
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>emb|AJ319659.1|TAE319659 Triticum aestivum mRNA for adenosine diphosphate glucose
           pyrophosphatase
          Length = 642

 Score =  115 bits (58), Expect = 6e-23
 Identities = 58/58 (100%)
 Strand = Plus / Minus

                                                                     
Query: 171 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 585
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>emb|AJ291451.1|HVU291451 Hordeum vulgare mRNA for adenosine diphosphate glucose
           pyrophosphatase (sagppase gene)
          Length = 639

 Score =  115 bits (58), Expect = 6e-23
 Identities = 58/58 (100%)
 Strand = Plus / Minus

                                                                     
Query: 171 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 582
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>ref|XM_482788.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 938

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                 
Query: 175 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 686
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>ref|XM_507258.1| PREDICTED Oryza sativa (japonica cultivar-group), P0493A04.40 mRNA
          Length = 994

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                 
Query: 175 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 675
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                      
Query: 175      ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
                ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 22551065 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 22551118
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>dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0690E03
          Length = 139924

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                   
Query: 175   ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
             ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24566 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 24619
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>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0493A04
          Length = 149367

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                    
Query: 175    ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
              ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 145993 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 146046
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>dbj|AK104729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C02, full
           insert sequence
          Length = 938

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                 
Query: 175 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 686
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>dbj|AK065284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M08, full
           insert sequence
          Length = 994

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                 
Query: 175 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 675
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>gb|AF051156.1|AF051156 Oryza sativa germin-like protein (GLP110) mRNA, complete cds
          Length = 1004

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                 
Query: 175 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 667
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>gb|AF032975.1|AF032975 Oryza sativa germin-like protein 5 (GER5) mRNA, complete cds
          Length = 1030

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                 
Query: 175 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 688
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>dbj|AB015593.1| Oryza sativa OsGLP1 gene for germin-like protein 1, complete cds
          Length = 642

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                 
Query: 175 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 585
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>dbj|AB010876.1| Oryza sativa OsGLP1 mRNA for germin-like protein 1, complete cds
          Length = 994

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                 
Query: 175 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaag 687
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>gb|AY394010.1| Zea mays germin-like protein (glp1) gene, promoter region and
            complete cds
          Length = 2490

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 175  ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaag 228
            |||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 2089 ccgctgccgccgagcacactcttgagcttcttcacctgcgcgtcgtccaagaag 2036
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>gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, complete sequence
          Length = 162877

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 38     caaatgaaattgatatgaaaaat 60
              |||||||||||||||||||||||
Sbjct: 144794 caaatgaaattgatatgaaaaat 144816
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>gb|AC137000.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0035I01, complete sequence
          Length = 147813

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 43   gaaattgatatgaaaaattaaa 64
            ||||||||||||||||||||||
Sbjct: 3137 gaaattgatatgaaaaattaaa 3158
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>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence
          Length = 158384

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 43    gaaattgatatgaaaaattaaa 64
             ||||||||||||||||||||||
Sbjct: 58531 gaaattgatatgaaaaattaaa 58552
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 43       gaaattgatatgaaaaattaaa 64
                ||||||||||||||||||||||
Sbjct: 29518635 gaaattgatatgaaaaattaaa 29518656
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 176     cgctgccgccgagcacggacttgagc 201
               |||||||||||||||||| |||||||
Sbjct: 7136995 cgctgccgccgagcacggccttgagc 7137020
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>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0086G17,
              complete sequence
          Length = 134631

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 43     gaaattgatatgaaaaattaaa 64
              ||||||||||||||||||||||
Sbjct: 102905 gaaattgatatgaaaaattaaa 102926
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>gb|AY299121.1| Xanthomonas oryzae bacteriophage Xp10 genomic DNA, complete genome
          Length = 44373

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 199   agcttcttcacctgcgcgtcg 219
             |||||||||||||||||||||
Sbjct: 10658 agcttcttcacctgcgcgtcg 10638
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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 198    gagcttcttcacctgcgcgtcgtcc 222
              |||||||||||||| ||||||||||
Sbjct: 305483 gagcttcttcaccttcgcgtcgtcc 305507
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>gb|AC122011.3| Mus musculus chromosome 10 clone RP24-352E6, complete sequence
          Length = 181468

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    gaaattgatatgaaaaatta 62
             ||||||||||||||||||||
Sbjct: 13285 gaaattgatatgaaaaatta 13266
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 201     cttcttcacctgcgcgtcgt 220
               ||||||||||||||||||||
Sbjct: 2254715 cttcttcacctgcgcgtcgt 2254734
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>gb|AC146316.3| Microcebus murinus clone CH257-437M14, complete sequence
          Length = 274705

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    ttgatatgaaaaattaaaca 66
             ||||||||||||||||||||
Sbjct: 59774 ttgatatgaaaaattaaaca 59793
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>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence
          Length = 210751

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    catcaaatgaaattgatatgaaaa 58
             |||||| |||||||||||||||||
Sbjct: 57747 catcaattgaaattgatatgaaaa 57770
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>ref|XM_598627.2| PREDICTED: Bos taurus similar to CG6454-PB, isoform B (LOC520387),
            mRNA
          Length = 3625

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   gaaaaattaaacacaacttgaaac 77
            |||||||||||||||| |||||||
Sbjct: 3157 gaaaaattaaacacaaattgaaac 3134
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>gb|AC087514.2| Felis catus clone RP86-439N5, complete sequence
          Length = 151974

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aatcatcaaatgaaattgat 51
             ||||||||||||||||||||
Sbjct: 60358 aatcatcaaatgaaattgat 60377
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     gccgctgccgccgagcacgg 193
               ||||||||||||||||||||
Sbjct: 2457731 gccgctgccgccgagcacgg 2457712
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>gb|AC141846.3| Homo sapiens chromosome 16 clone CTB-55P19, complete sequence
          Length = 261450

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 42     tgaaattgatatgaaaaattaaacacaa 69
              ||||| |||| |||||||||||||||||
Sbjct: 232770 tgaaagtgatctgaaaaattaaacacaa 232743
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>gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome 10, complete sequence
          Length = 245623

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     tgaaaaattaaacacaacttgaaa 76
              ||||||||||||||||| ||||||
Sbjct: 225998 tgaaaaattaaacacaaattgaaa 226021
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>gb|AC100120.9| Mus musculus chromosome 10, clone RP23-40I1, complete sequence
          Length = 236895

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    gaaattgatatgaaaaatta 62
             ||||||||||||||||||||
Sbjct: 38058 gaaattgatatgaaaaatta 38077
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>gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, complete sequence
          Length = 198281

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     aatgaaattgatatgaaaaa 59
              ||||||||||||||||||||
Sbjct: 195204 aatgaaattgatatgaaaaa 195185
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>emb|BX322613.6| Human DNA sequence from clone RP11-745D9 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 191752

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aatcatcaaatgaaattgat 51
             ||||||||||||||||||||
Sbjct: 40708 aatcatcaaatgaaattgat 40727
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>emb|AL590225.4| Human DNA sequence from clone RP11-358H7 on chromosome 6 Contains
            part of the gene for a novel protein highly similar to
            FLJ30899, complete sequence
          Length = 65114

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   aattgatatgaaaaattaaa 64
            ||||||||||||||||||||
Sbjct: 1289 aattgatatgaaaaattaaa 1270
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>emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chromosome 6, complete
             sequence
          Length = 81780

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tgaaaaattaaacacaactt 72
             ||||||||||||||||||||
Sbjct: 54905 tgaaaaattaaacacaactt 54886
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>emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C10 on chromosome 10 Contains
           a poly(A) binding protein, cytoplasmic 1 (PABPC1)
           pseudogene, an Ig kappa chain precursor V region
           pseudogene, a pseudogene similar to part of kinase
           suppressor of ras (KSR) and four CpG islands, complete
           sequence
          Length = 197700

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  aatcatcaaatgaaattgat 51
           ||||||||||||||||||||
Sbjct: 760 aatcatcaaatgaaattgat 779
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>gb|AC161185.5| Mus musculus chromosome 5, clone RP23-297D16, complete sequence
          Length = 206099

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 35   catcaaatgaaattgatatgaaaa 58
            |||||| |||||||||||||||||
Sbjct: 2381 catcaattgaaattgatatgaaaa 2358
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     aaattgatatgaaaaattaa 63
              ||||||||||||||||||||
Sbjct: 281659 aaattgatatgaaaaattaa 281678
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>gb|AC158753.8| Mus musculus chromosome 5, clone RP23-301E24, complete sequence
          Length = 190368

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    aatgaaattgatatgaaaaa 59
             ||||||||||||||||||||
Sbjct: 32566 aatgaaattgatatgaaaaa 32547
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>gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155413

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tgaaaaattaaacacaactt 72
             ||||||||||||||||||||
Sbjct: 18496 tgaaaaattaaacacaactt 18477
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>gb|AC092721.2| Homo sapiens chromosome 16 clone RP11-514P19, complete sequence
          Length = 201382

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 42     tgaaattgatatgaaaaattaaacacaa 69
              ||||| |||| |||||||||||||||||
Sbjct: 194536 tgaaagtgatctgaaaaattaaacacaa 194509
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>gb|AC140831.3| Homo sapiens chromosome 16 clone RP11-907K12, complete sequence
          Length = 96984

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 42    tgaaattgatatgaaaaattaaacacaa 69
             ||||| |||| |||||||||||||||||
Sbjct: 28681 tgaaagtgatctgaaaaattaaacacaa 28708
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>gb|AC092374.4| Homo sapiens chromosome 16 clone RP11-637I8, complete sequence
          Length = 150962

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 42    tgaaattgatatgaaaaattaaacacaa 69
             ||||| |||| |||||||||||||||||
Sbjct: 92388 tgaaagtgatctgaaaaattaaacacaa 92361
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>gb|AC026131.4| Homo sapiens chromosome 11, clone RP11-458M15, complete sequence
          Length = 174688

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     aatcatcaaatgaaattgat 51
              ||||||||||||||||||||
Sbjct: 102969 aatcatcaaatgaaattgat 102950
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     aaattgatatgaaaaattaa 63
              ||||||||||||||||||||
Sbjct: 282959 aaattgatatgaaaaattaa 282978
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>gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete sequence
          Length = 177471

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     tgaaaaattaaacacaactt 72
              ||||||||||||||||||||
Sbjct: 126735 tgaaaaattaaacacaactt 126754
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     cttcttcacctgcgcgtcgt 220
               ||||||||||||||||||||
Sbjct: 2421518 cttcttcacctgcgcgtcgt 2421499
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>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     ttgatatgaaaaattaaaca 66
              ||||||||||||||||||||
Sbjct: 631265 ttgatatgaaaaattaaaca 631284


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,277,356
Number of Sequences: 3902068
Number of extensions: 2277356
Number of successful extensions: 47721
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47436
Number of HSP's gapped (non-prelim): 284
length of query: 228
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 206
effective length of database: 17,147,199,772
effective search space: 3532323153032
effective search space used: 3532323153032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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