| Clone Name | rbast16b09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L11872.1|WHTSHH Triticum aestivum S-adenosyl-L-homocysteine hydrolase (SH6.2) mRNA, complete cds Length = 1708 Score = 176 bits (89), Expect = 9e-42 Identities = 110/117 (94%) Strand = Plus / Minus Query: 1 ctcacataaaccaatgataatggcattatttctgggcaaaagcaaacgcagcctttccca 60 ||||| ||||||||| |||||| |||||||||||||||||||||||||| |||| ||||| Sbjct: 1693 ctcacttaaaccaataataatgccattatttctgggcaaaagcaaacgccgcctctccca 1634 Query: 61 accctcacaaggctcaaaacataaccgtaataacaaatcctccccctaagagacagc 117 |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 1633 accctcacaaggctcaaaacataaccataataacaaatcctccgcctaagagacagc 1577
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22, complete sequence Length = 161172 Score = 50.1 bits (25), Expect = 0.001 Identities = 25/25 (100%) Strand = Plus / Plus Query: 24 cattatttctgggcaaaagcaaacg 48 ||||||||||||||||||||||||| Sbjct: 67385 cattatttctgggcaaaagcaaacg 67409
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 0.001 Identities = 25/25 (100%) Strand = Plus / Plus Query: 24 cattatttctgggcaaaagcaaacg 48 ||||||||||||||||||||||||| Sbjct: 14844387 cattatttctgggcaaaagcaaacg 14844411
>dbj|AK122115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128A13, full insert sequence Length = 1882 Score = 50.1 bits (25), Expect = 0.001 Identities = 25/25 (100%) Strand = Plus / Minus Query: 24 cattatttctgggcaaaagcaaacg 48 ||||||||||||||||||||||||| Sbjct: 1740 cattatttctgggcaaaagcaaacg 1716
>dbj|AK119539.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C04, full insert sequence Length = 1879 Score = 50.1 bits (25), Expect = 0.001 Identities = 25/25 (100%) Strand = Plus / Minus Query: 24 cattatttctgggcaaaagcaaacg 48 ||||||||||||||||||||||||| Sbjct: 1740 cattatttctgggcaaaagcaaacg 1716
>dbj|AK060299.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-G09, full insert sequence Length = 1102 Score = 50.1 bits (25), Expect = 0.001 Identities = 25/25 (100%) Strand = Plus / Minus Query: 24 cattatttctgggcaaaagcaaacg 48 ||||||||||||||||||||||||| Sbjct: 963 cattatttctgggcaaaagcaaacg 939
>dbj|AK059712.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F05, full insert sequence Length = 1876 Score = 50.1 bits (25), Expect = 0.001 Identities = 25/25 (100%) Strand = Plus / Minus Query: 24 cattatttctgggcaaaagcaaacg 48 ||||||||||||||||||||||||| Sbjct: 1743 cattatttctgggcaaaagcaaacg 1719
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 50.1 bits (25), Expect = 0.001 Identities = 25/25 (100%) Strand = Plus / Plus Query: 24 cattatttctgggcaaaagcaaacg 48 ||||||||||||||||||||||||| Sbjct: 14924286 cattatttctgggcaaaagcaaacg 14924310
>emb|AM039898.1| Hordeum vulgare mRNA for putative S-adenosylhomocystein hydrolase 2 (ahh2 gene) Length = 1767 Score = 50.1 bits (25), Expect = 0.001 Identities = 25/25 (100%) Strand = Plus / Minus Query: 25 attatttctgggcaaaagcaaacgc 49 ||||||||||||||||||||||||| Sbjct: 1679 attatttctgggcaaaagcaaacgc 1655 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 93 acaaatcctccccctaagagaca 115 ||||||||||| ||||||||||| Sbjct: 1610 acaaatcctccacctaagagaca 1588
>gb|AC117222.3| Mus musculus BAC clone RP23-347H12 from chromosome 16, complete sequence Length = 200746 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cataaaccaatgataatggc 24 |||||||||||||||||||| Sbjct: 66268 cataaaccaatgataatggc 66287
>gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence Length = 129285 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 taataacaaatcctccccc 106 ||||||||||||||||||| Sbjct: 98832 taataacaaatcctccccc 98850
>emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in linkage group 3, complete sequence Length = 180778 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 28 atttctgggcaaaagcaaacgca 50 ||||| ||||||||||||||||| Sbjct: 141218 atttcagggcaaaagcaaacgca 141240
>gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-40I5, complete sequence Length = 241886 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 40 aagcaaacgcagcctttcccaac 62 |||||||||||| |||||||||| Sbjct: 80883 aagcaaacgcagactttcccaac 80861
>gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 231946 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 40 aagcaaacgcagcctttcccaac 62 |||||||||||| |||||||||| Sbjct: 21125 aagcaaacgcagactttcccaac 21103
>gb|AC012512.7| Homo sapiens BAC clone RP11-561O7 from 2, complete sequence Length = 179460 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 22 ggcattatttctgggcaaaagca 44 |||||| |||||||||||||||| Sbjct: 112636 ggcattctttctgggcaaaagca 112658
>gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168227 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 atgataatggcattatttc 32 ||||||||||||||||||| Sbjct: 157433 atgataatggcattatttc 157415
>gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from Sequence-12, complete sequence Length = 196817 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 atgataatggcattatttc 32 ||||||||||||||||||| Sbjct: 24879 atgataatggcattatttc 24897
>gb|AE001439.1| Helicobacter pylori J99, complete genome Length = 1643831 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 gataatggcattatttctgggca 38 |||||||||||||||| |||||| Sbjct: 1276961 gataatggcattatttttgggca 1276939
>gb|AE000511.1| Helicobacter pylori 26695, complete genome Length = 1667867 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 gataatggcattatttctgggca 38 |||||||||||||||| |||||| Sbjct: 1298685 gataatggcattatttttgggca 1298663
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 tatttctgggcaaaagcaa 45 ||||||||||||||||||| Sbjct: 1056153 tatttctgggcaaaagcaa 1056135
>gb|U72810.1|RHU72810 Rudbeckia heliopsidis internal transcribed spacer 1 sequence Length = 250 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 cctcacaaggctcaaaaca 81 ||||||||||||||||||| Sbjct: 88 cctcacaaggctcaaaaca 70 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,055,420 Number of Sequences: 3902068 Number of extensions: 1055420 Number of successful extensions: 79274 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79152 Number of HSP's gapped (non-prelim): 122 length of query: 117 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 96 effective length of database: 17,151,101,840 effective search space: 1646505776640 effective search space used: 1646505776640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)