ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast16b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L11872.1|WHTSHH Triticum aestivum S-adenosyl-L-homocysteine h... 176 9e-42
2gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome... 50 0.001
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.001
4dbj|AK122115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
5dbj|AK119539.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
6dbj|AK060299.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
7dbj|AK059712.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.001
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.001
9emb|AM039898.1| Hordeum vulgare mRNA for putative S-adenosylhomo... 50 0.001
10gb|AC117222.3| Mus musculus BAC clone RP23-347H12 from chromosom... 40 1.4
11gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence 38 5.4
12emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in... 38 5.4
13gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 38 5.4
14gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Canc... 38 5.4
15gb|AC012512.7| Homo sapiens BAC clone RP11-561O7 from 2, complet... 38 5.4
16gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell... 38 5.4
17gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from S... 38 5.4
18gb|AE001439.1| Helicobacter pylori J99, complete genome 38 5.4
19gb|AE000511.1| Helicobacter pylori 26695, complete genome 38 5.4
20dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 38 5.4
21gb|U72810.1|RHU72810 Rudbeckia heliopsidis internal transcribed ... 38 5.4

>gb|L11872.1|WHTSHH Triticum aestivum S-adenosyl-L-homocysteine hydrolase (SH6.2) mRNA,
            complete cds
          Length = 1708

 Score =  176 bits (89), Expect = 9e-42
 Identities = 110/117 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctcacataaaccaatgataatggcattatttctgggcaaaagcaaacgcagcctttccca 60
            ||||| ||||||||| |||||| |||||||||||||||||||||||||| |||| |||||
Sbjct: 1693 ctcacttaaaccaataataatgccattatttctgggcaaaagcaaacgccgcctctccca 1634

                                                                     
Query: 61   accctcacaaggctcaaaacataaccgtaataacaaatcctccccctaagagacagc 117
            |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 1633 accctcacaaggctcaaaacataaccataataacaaatcctccgcctaagagacagc 1577



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>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0041C22, complete sequence
          Length = 161172

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 24    cattatttctgggcaaaagcaaacg 48
             |||||||||||||||||||||||||
Sbjct: 67385 cattatttctgggcaaaagcaaacg 67409



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 24       cattatttctgggcaaaagcaaacg 48
                |||||||||||||||||||||||||
Sbjct: 14844387 cattatttctgggcaaaagcaaacg 14844411



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>dbj|AK122115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128A13, full
            insert sequence
          Length = 1882

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 24   cattatttctgggcaaaagcaaacg 48
            |||||||||||||||||||||||||
Sbjct: 1740 cattatttctgggcaaaagcaaacg 1716



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>dbj|AK119539.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C04, full
            insert sequence
          Length = 1879

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 24   cattatttctgggcaaaagcaaacg 48
            |||||||||||||||||||||||||
Sbjct: 1740 cattatttctgggcaaaagcaaacg 1716



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>dbj|AK060299.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-G09, full
           insert sequence
          Length = 1102

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 24  cattatttctgggcaaaagcaaacg 48
           |||||||||||||||||||||||||
Sbjct: 963 cattatttctgggcaaaagcaaacg 939



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>dbj|AK059712.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F05, full
            insert sequence
          Length = 1876

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 24   cattatttctgggcaaaagcaaacg 48
            |||||||||||||||||||||||||
Sbjct: 1743 cattatttctgggcaaaagcaaacg 1719



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 24       cattatttctgggcaaaagcaaacg 48
                |||||||||||||||||||||||||
Sbjct: 14924286 cattatttctgggcaaaagcaaacg 14924310



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>emb|AM039898.1| Hordeum vulgare mRNA for putative S-adenosylhomocystein hydrolase 2
            (ahh2 gene)
          Length = 1767

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 25   attatttctgggcaaaagcaaacgc 49
            |||||||||||||||||||||||||
Sbjct: 1679 attatttctgggcaaaagcaaacgc 1655



 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 93   acaaatcctccccctaagagaca 115
            ||||||||||| |||||||||||
Sbjct: 1610 acaaatcctccacctaagagaca 1588



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>gb|AC117222.3| Mus musculus BAC clone RP23-347H12 from chromosome 16, complete
             sequence
          Length = 200746

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     cataaaccaatgataatggc 24
             ||||||||||||||||||||
Sbjct: 66268 cataaaccaatgataatggc 66287



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>gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence
          Length = 129285

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 88    taataacaaatcctccccc 106
             |||||||||||||||||||
Sbjct: 98832 taataacaaatcctccccc 98850



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>emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in linkage group 3,
              complete sequence
          Length = 180778

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 28     atttctgggcaaaagcaaacgca 50
              ||||| |||||||||||||||||
Sbjct: 141218 atttcagggcaaaagcaaacgca 141240



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>gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-40I5, complete
             sequence
          Length = 241886

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 40    aagcaaacgcagcctttcccaac 62
             |||||||||||| ||||||||||
Sbjct: 80883 aagcaaacgcagactttcccaac 80861



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>gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 231946

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 40    aagcaaacgcagcctttcccaac 62
             |||||||||||| ||||||||||
Sbjct: 21125 aagcaaacgcagactttcccaac 21103



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>gb|AC012512.7| Homo sapiens BAC clone RP11-561O7 from 2, complete sequence
          Length = 179460

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 22     ggcattatttctgggcaaaagca 44
              |||||| ||||||||||||||||
Sbjct: 112636 ggcattctttctgggcaaaagca 112658



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>gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 168227

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     atgataatggcattatttc 32
              |||||||||||||||||||
Sbjct: 157433 atgataatggcattatttc 157415



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>gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from Sequence-12, complete sequence
          Length = 196817

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    atgataatggcattatttc 32
             |||||||||||||||||||
Sbjct: 24879 atgataatggcattatttc 24897



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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 16      gataatggcattatttctgggca 38
               |||||||||||||||| ||||||
Sbjct: 1276961 gataatggcattatttttgggca 1276939



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>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 16      gataatggcattatttctgggca 38
               |||||||||||||||| ||||||
Sbjct: 1298685 gataatggcattatttttgggca 1298663



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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 27      tatttctgggcaaaagcaa 45
               |||||||||||||||||||
Sbjct: 1056153 tatttctgggcaaaagcaa 1056135



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>gb|U72810.1|RHU72810 Rudbeckia heliopsidis internal transcribed spacer 1 sequence
          Length = 250

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 63 cctcacaaggctcaaaaca 81
          |||||||||||||||||||
Sbjct: 88 cctcacaaggctcaaaaca 70


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,055,420
Number of Sequences: 3902068
Number of extensions: 1055420
Number of successful extensions: 79274
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79152
Number of HSP's gapped (non-prelim): 122
length of query: 117
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 96
effective length of database: 17,151,101,840
effective search space: 1646505776640
effective search space used: 1646505776640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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