ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast15h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY781902.1| Saccharum hybrid cultivar isolate c57 auxin-induc... 90 4e-15
2gb|AY103836.1| Zea mays PCO135053 mRNA sequence 82 1e-12
3dbj|AK068213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
4ref|XM_468970.1| Oryza sativa (japonica cultivar-group), mRNA 66 6e-08
5emb|AJ306829.1|PTR306829 Populus tremula x Populus tremuloides m... 60 4e-06
6emb|AJ843999.1| Plantago major mRNA for auxin resistance protein... 58 1e-05
7gb|AF123509.1|AF123509 Nicotiana tabacum Nt-iaa4.1 deduced prote... 56 6e-05
8gb|AF123508.1|AF123508 Nicotiana tabacum Nt-iaa28 deduced protei... 56 6e-05
9ref|NM_100306.2| Arabidopsis thaliana AXR3 (AUXIN RESISTANT 3); ... 54 2e-04
10gb|AF336916.1| Arabidopsis thaliana auxin-induced protein, IAA17... 54 2e-04
11gb|AY117183.1| Arabidopsis thaliana auxin-induced protein IAA17/... 54 2e-04
12gb|AY070094.1| Arabidopsis thaliana auxin-induced protein IAA17/... 54 2e-04
13dbj|AK221076.1| Arabidopsis thaliana mRNA for putative auxin-ind... 54 2e-04
14gb|AY087284.1| Arabidopsis thaliana clone 33613 mRNA, complete s... 54 2e-04
15gb|U49073.1|ATU49073 Arabidopsis thaliana early auxin-induced (I... 54 2e-04
16gb|AC145780.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.057
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.057
18gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genom... 46 0.057
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.057
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.057
21gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.057
22emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb... 46 0.057
23dbj|AB029148.1| Cucumis sativus mRNA expressed in cucumber hypoc... 46 0.057
24ref|NM_111345.2| Arabidopsis thaliana IAA16; transcription facto... 44 0.22
25ref|NM_117535.4| Arabidopsis thaliana IAA14 (SOLITARY ROOT); tra... 44 0.22
26gb|AF334718.1| Arabidopsis thaliana IAA14 (At4g14550) mRNA, comp... 44 0.22
27gb|BT000857.1| Arabidopsis thaliana At3g04730/F7O18_22 mRNA, com... 44 0.22
28gb|AF375420.1| Arabidopsis thaliana AT3g04730/F7O18_22 mRNA, com... 44 0.22
29dbj|AK221957.1| Arabidopsis thaliana mRNA for auxin-induced prot... 44 0.22
30gb|AF332400.1| Arabidopsis thaliana clone C00021 (e) auxin-induc... 44 0.22
31emb|BX823949.1|CNS0A6JG Arabidopsis thaliana Full-length cDNA Co... 44 0.22
32emb|BX824584.1|CNS0A4VR Arabidopsis thaliana Full-length cDNA Co... 44 0.22
33emb|BX827786.1|CNS0A3TV Arabidopsis thaliana Full-length cDNA Co... 44 0.22
34gb|AY087195.1| Arabidopsis thaliana clone 32727 mRNA, complete s... 44 0.22
35gb|AF123504.1|AF123504 Nicotiana tabacum Nt-iaa2.3 deduced prote... 44 0.22
36gb|U18416.1|ATU18416 Arabidopsis thaliana IAA14 (IAA14) gene, pa... 44 0.22
37gb|U49072.1|ATU49072 Arabidopsis thaliana early auxin-induced (I... 44 0.22
38dbj|AP006633.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 0.89
39ref|NM_100305.2| Arabidopsis thaliana SHY2 (SHORT HYPOCOTYL 2); ... 40 3.5
40gb|AC092098.3| Homo sapiens BAC clone RP11-533K11 from 7, comple... 40 3.5
41emb|AL353742.23| Human DNA sequence from clone RP11-505C13 on ch... 40 3.5
42ref|XM_777892.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.5
43gb|AY064007.1| Arabidopsis thaliana putative auxin-induced prote... 40 3.5
44gb|AC023844.6| Homo sapiens chromosome 15, clone RP11-427O16, co... 40 3.5
45gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete... 40 3.5
46gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 3.5
47gb|AF332393.1| Arabidopsis thaliana clone C00011 (f) auxin-induc... 40 3.5
48gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, comple... 40 3.5
49gb|AC021677.4|AC021677 Homo sapiens chromosome 15, clone RP11-62... 40 3.5
50ref|XM_623505.1| PREDICTED: Apis mellifera similar to kinesin-li... 40 3.5
51emb|AJ306830.1|PTR306830 Populus tremula x Populus tremuloides m... 40 3.5
52gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis tha... 40 3.5
53gb|U18406.1|ATU18406 Arabidopsis thaliana IAA3 (IAA3) gene, comp... 40 3.5
54gb|DQ243481.1| Bombyx mori chromosome 24 microsatellite S2418-R ... 40 3.5 
>gb|AY781902.1| Saccharum hybrid cultivar isolate c57 auxin-induced protein mRNA,
           partial cds
          Length = 1046

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                       
Query: 202 tcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcattatcc 261
           |||||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||
Sbjct: 558 tcttgcatttctccatggccctcggcgcgaggccaatggcttctgatcctttcatgatcc 499

                    
Query: 262 ggaggcgct 270
           | |||||||
Sbjct: 498 gaaggcgct 490
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>gb|AY103836.1| Zea mays PCO135053 mRNA sequence
          Length = 1519

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                       
Query: 202 tcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcattatcc 261
           |||||||||||||||| |||||||| || || || |||||||||||||||||||| ||||
Sbjct: 985 tcttgcatttctccatggcccttggtgccaggccaatggcttctgatcctttcatgatcc 926

                    
Query: 262 ggaggcgct 270
           | |||||||
Sbjct: 925 gaaggcgct 917
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>dbj|AK068213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K13, full
            insert sequence
          Length = 1545

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                        
Query: 202  tcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcattatcc 261
            |||||||||||||||||||||| || || || || || ||||||||||||||||||||||
Sbjct: 1075 tcttgcatttctccattgccctcggtgcaaggccaatagcttctgatcctttcattatcc 1016

                     
Query: 262  ggaggcgct 270
              |||||||
Sbjct: 1015 taaggcgct 1007
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>ref|XM_468970.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 707

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                       
Query: 200 gctcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||||||||||| ||||||||| || || || |||||||| || |||||||| ||
Sbjct: 704 gctcttgcatttctccactgcccttggtgcaaggccaatggcttcagaccctttcatgat 645

                    
Query: 260 ccggaggcg 268
            ||||||||
Sbjct: 644 tcggaggcg 636
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>emb|AJ306829.1|PTR306829 Populus tremula x Populus tremuloides mRNA for aux/IAA protein (IAA6
            gene)
          Length = 1206

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 198  ctgctcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcatt 257
            ||||||||||||||||||||||| ||||| || || || |  ||||| ||||||||||||
Sbjct: 1031 ctgctcttgcatttctccattgctcttggtgcaagtccaacagcttcagatcctttcatt 972

              
Query: 258  at 259
            ||
Sbjct: 971  at 970
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>emb|AJ843999.1| Plantago major mRNA for auxin resistance protein (axr2 gene)
          Length = 1195

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                       
Query: 198 ctgctcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcatt 257
           |||||||||||||||||||| ||||| || || || || ||||| || | ||||||||||
Sbjct: 830 ctgctcttgcatttctccatggccctgggtgcaagtccaatggcctcagttcctttcatt 771

                        
Query: 258 atccggaggcgct 270
           || || |||||||
Sbjct: 770 atgcgcaggcgct 758
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>gb|AF123509.1|AF123509 Nicotiana tabacum Nt-iaa4.1 deduced protein mRNA, complete cds
          Length = 884

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 202 tcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcattatcc 261
           ||||||||||||||| ||| ||||| || || || || || |||||||||||||||||||
Sbjct: 730 tcttgcatttctccactgctcttggtgctagtccaattgcctctgatcctttcattatcc 671
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>gb|AF123508.1|AF123508 Nicotiana tabacum Nt-iaa28 deduced protein mRNA, complete cds
          Length = 943

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 202 tcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcattatcc 261
           ||||||||||||||| ||| ||||| || || || ||||| || ||||||||||||||||
Sbjct: 772 tcttgcatttctccactgctcttggtgctagtccaatggcctcagatcctttcattatcc 713
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>ref|NM_100306.2| Arabidopsis thaliana AXR3 (AUXIN RESISTANT 3); transcription factor
           AT1G04250 (AXR3) mRNA, complete cds
          Length = 1057

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 198 ctgctcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcat 256
           ||||||||||| |||||||| ||||| || ||||| || ||||| || |||||||||||
Sbjct: 807 ctgctcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 749
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>gb|AF336916.1| Arabidopsis thaliana auxin-induced protein, IAA17/AXR3-1
           (At1g04250) mRNA, complete cds
          Length = 690

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 198 ctgctcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcat 256
           ||||||||||| |||||||| ||||| || ||||| || ||||| || |||||||||||
Sbjct: 683 ctgctcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 625
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>gb|AY117183.1| Arabidopsis thaliana auxin-induced protein IAA17/AXR3-1 (At1g04250)
           mRNA, complete cds
          Length = 721

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 198 ctgctcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcat 256
           ||||||||||| |||||||| ||||| || ||||| || ||||| || |||||||||||
Sbjct: 683 ctgctcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 625
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>gb|AY070094.1| Arabidopsis thaliana auxin-induced protein IAA17/AXR3-1 (At1g04250)
           mRNA, complete cds
          Length = 1033

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 198 ctgctcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcat 256
           ||||||||||| |||||||| ||||| || ||||| || ||||| || |||||||||||
Sbjct: 765 ctgctcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 707
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>dbj|AK221076.1| Arabidopsis thaliana mRNA for putative auxin-induced protein,
           IAA17/AXR3-1, complete cds, clone: RAFL22-79-F09
          Length = 452

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 198 ctgctcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcat 256
           ||||||||||| |||||||| ||||| || ||||| || ||||| || |||||||||||
Sbjct: 210 ctgctcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 152
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>gb|AY087284.1| Arabidopsis thaliana clone 33613 mRNA, complete sequence
          Length = 1021

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 198 ctgctcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcat 256
           ||||||||||| |||||||| ||||| || ||||| || ||||| || |||||||||||
Sbjct: 807 ctgctcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 749
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>gb|U49073.1|ATU49073 Arabidopsis thaliana early auxin-induced (IAA17) mRNA, complete cds
          Length = 971

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 198 ctgctcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcat 256
           ||||||||||| |||||||| ||||| || ||||| || ||||| || |||||||||||
Sbjct: 744 ctgctcttgcacttctccatcgccctcggagcgagaccaatggcatccgatcctttcat 686
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>gb|AC145780.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0069P02 map near S13580, complete sequence
          Length = 88044

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 200  gctcttgcatttctccattgcccttgg 226
            ||||||||||||||||| |||||||||
Sbjct: 6368 gctcttgcatttctccactgcccttgg 6342
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 200      gctcttgcatttctccattgcccttgg 226
                ||||||||||||||||| |||||||||
Sbjct: 24085088 gctcttgcatttctccactgcccttgg 24085114
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>gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genomic sequence, complete
              sequence
          Length = 140980

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 200    gctcttgcatttctccattgcccttgg 226
              ||||||||||||||||| |||||||||
Sbjct: 137468 gctcttgcatttctccactgcccttgg 137442
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 240      gcttctgatcctttcattatccggaggcgct 270
                ||||||||||||||||||||||  |||||||
Sbjct: 25345144 gcttctgatcctttcattatcctaaggcgct 25345174



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 202      tcttgcatttctccattgccct 223
                ||||||||||||||||||||||
Sbjct: 25344965 tcttgcatttctccattgccct 25344986
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 200      gctcttgcatttctccattgcccttgg 226
                ||||||||||||||||| |||||||||
Sbjct: 24002557 gctcttgcatttctccactgcccttgg 24002583
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 240      gcttctgatcctttcattatccggaggcgct 270
                ||||||||||||||||||||||  |||||||
Sbjct: 25273320 gcttctgatcctttcattatcctaaggcgct 25273350



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 202      tcttgcatttctccattgccct 223
                ||||||||||||||||||||||
Sbjct: 25273141 tcttgcatttctccattgccct 25273162
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>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152914

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 240   gcttctgatcctttcattatccggaggcgct 270
             ||||||||||||||||||||||  |||||||
Sbjct: 11954 gcttctgatcctttcattatcctaaggcgct 11984



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 202   tcttgcatttctccattgccct 223
             ||||||||||||||||||||||
Sbjct: 11775 tcttgcatttctccattgccct 11796
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>dbj|AB029148.1| Cucumis sativus mRNA expressed in cucumber hypocotyls, complete cds
          Length = 1187

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 202 tcttgcatttctccattgcccttggcgcgagcccgatggcttctgatcctttcat 256
           |||||||||||||||| |||||||| || || || ||||| |||  |||||||||
Sbjct: 813 tcttgcatttctccatagcccttggtgcaagtccaatggcctcttttcctttcat 759
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>ref|NM_111345.2| Arabidopsis thaliana IAA16; transcription factor AT3G04730 (IAA16)
           mRNA, complete cds
          Length = 1279

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 218 tgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct: 871 tgcccttggagcaagtccgattgcttctgatcccttcattat 830
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>ref|NM_117535.4| Arabidopsis thaliana IAA14 (SOLITARY ROOT); transcription factor
           AT4G14550 (IAA14) mRNA, complete cds
          Length = 1482

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 210 ttctccattgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||||| ||||| || || || || ||||| ||||||||||||||
Sbjct: 764 ttctccattgctcttggagcaagtccaattgcttcggatcctttcattat 715
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>gb|AF334718.1| Arabidopsis thaliana IAA14 (At4g14550) mRNA, complete cds
          Length = 687

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 210 ttctccattgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||||| ||||| || || || || ||||| ||||||||||||||
Sbjct: 668 ttctccattgctcttggagcaagtccaattgcttcggatcctttcattat 619
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>gb|BT000857.1| Arabidopsis thaliana At3g04730/F7O18_22 mRNA, complete cds
          Length = 711

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 218 tgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct: 684 tgcccttggagcaagtccgattgcttctgatcccttcattat 643
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>gb|AF375420.1| Arabidopsis thaliana AT3g04730/F7O18_22 mRNA, complete cds
          Length = 1261

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 218 tgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct: 867 tgcccttggagcaagtccgattgcttctgatcccttcattat 826
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>dbj|AK221957.1| Arabidopsis thaliana mRNA for auxin-induced protein, complete cds,
           clone: RAFL22-51-M14
          Length = 519

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 218 tgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct: 224 tgcccttggagcaagtccgattgcttctgatcccttcattat 183
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>gb|AF332400.1| Arabidopsis thaliana clone C00021 (e) auxin-induced protein IAA16
           (At3g04730) mRNA, complete cds
          Length = 711

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 218 tgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct: 684 tgcccttggagcaagtccgattgcttctgatcccttcattat 643
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>emb|BX823949.1|CNS0A6JG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS9ZF01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1096

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 218 tgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct: 826 tgcccttggagcaagtccgattgcttctgatcccttcattat 785
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>emb|BX824584.1|CNS0A4VR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH58ZC08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1234

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 218 tgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct: 855 tgcccttggagcaagtccgattgcttctgatcccttcattat 814
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>emb|BX827786.1|CNS0A3TV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH21ZC02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1476

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 210 ttctccattgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||||| ||||| || || || || ||||| ||||||||||||||
Sbjct: 757 ttctccattgctcttggagcaagtccaattgcttcggatcctttcattat 708
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>gb|AY087195.1| Arabidopsis thaliana clone 32727 mRNA, complete sequence
          Length = 1140

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 218 tgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct: 871 tgcccttggagcaagtccgattgcttctgatcccttcattat 830
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>gb|AF123504.1|AF123504 Nicotiana tabacum Nt-iaa2.3 deduced protein mRNA, complete cds
          Length = 756

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 240 gcttctgatcctttcattatcc 261
           ||||||||||||||||||||||
Sbjct: 564 gcttctgatcctttcattatcc 543
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>gb|U18416.1|ATU18416 Arabidopsis thaliana IAA14 (IAA14) gene, partial cds
          Length = 732

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 210 ttctccattgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||||| ||||| || || || || ||||| ||||||||||||||
Sbjct: 476 ttctccattgctcttggagcaagtccaattgcttcggatcctttcattat 427
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>gb|U49072.1|ATU49072 Arabidopsis thaliana early auxin-induced (IAA16) mRNA, complete cds
          Length = 1169

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 218 tgcccttggcgcgagcccgatggcttctgatcctttcattat 259
           ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct: 850 tgcccttggagcaagtccgattgcttctgatcccttcattat 809
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>dbj|AP006633.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT12L11, TM0071,
             complete sequence
          Length = 69786

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 240   gcttctgatcctttcattatccggaggcg 268
             |||||||||||||||||||| || |||||
Sbjct: 23377 gcttctgatcctttcattattcgcaggcg 23349
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>ref|NM_100305.2| Arabidopsis thaliana SHY2 (SHORT HYPOCOTYL 2); transcription factor
           AT1G04240 (SHY2) mRNA, complete cds
          Length = 1042

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 238 tggcttctgatcctttcattatcc 261
           ||||||||||||||||||| ||||
Sbjct: 643 tggcttctgatcctttcatgatcc 620
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>gb|AC092098.3| Homo sapiens BAC clone RP11-533K11 from 7, complete sequence
          Length = 198786

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tatacatactacatattata 71
              ||||||||||||||||||||
Sbjct: 127104 tatacatactacatattata 127085
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>emb|AL353742.23| Human DNA sequence from clone RP11-505C13 on chromosome 9q31.1-32
             Contains part of a novel gene, complete sequence
          Length = 157657

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 85    atgacaacaagatggaatagaaga 108
             ||||||||||||||||||| ||||
Sbjct: 44677 atgacaacaagatggaataaaaga 44654
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>ref|XM_777892.1| PREDICTED: Strongylocentrotus purpuratus similar to forkhead box P1
           (LOC577677), mRNA
          Length = 4326

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 gctcctgctcttgcatttct 213
           ||||||||||||||||||||
Sbjct: 289 gctcctgctcttgcatttct 270
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>gb|AY064007.1| Arabidopsis thaliana putative auxin-induced protein IAA3
           (At1g04240) mRNA, complete cds
          Length = 1003

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 238 tggcttctgatcctttcattatcc 261
           ||||||||||||||||||| ||||
Sbjct: 643 tggcttctgatcctttcatgatcc 620
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>gb|AC023844.6| Homo sapiens chromosome 15, clone RP11-427O16, complete sequence
          Length = 188788

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     aaaggaaaatactattgatt 23
             ||||||||||||||||||||
Sbjct: 89461 aaaggaaaatactattgatt 89442
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>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence
          Length = 127223

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     aaaggaaaatactattgatt 23
             ||||||||||||||||||||
Sbjct: 40683 aaaggaaaatactattgatt 40664
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     gaaatggaccctcgatcggc 195
               ||||||||||||||||||||
Sbjct: 2894369 gaaatggaccctcgatcggc 2894350
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>gb|AF332393.1| Arabidopsis thaliana clone C00011 (f) auxin-induced protein IAA3
           (At1g04240) mRNA, complete cds
          Length = 570

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 238 tggcttctgatcctttcattatcc 261
           ||||||||||||||||||| ||||
Sbjct: 547 tggcttctgatcctttcatgatcc 524
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>gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, complete sequence
          Length = 211945

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  tagcagtactagtaatatta 135
            ||||||||||||||||||||
Sbjct: 2514 tagcagtactagtaatatta 2533
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>gb|AC021677.4|AC021677 Homo sapiens chromosome 15, clone RP11-62D2, complete sequence
          Length = 177762

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     aaaggaaaatactattgatt 23
             ||||||||||||||||||||
Sbjct: 77195 aaaggaaaatactattgatt 77176
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>ref|XM_623505.1| PREDICTED: Apis mellifera similar to kinesin-like boursin
           (LOC551109), mRNA
          Length = 2199

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   taaaggaaaatactattgat 22
           ||||||||||||||||||||
Sbjct: 710 taaaggaaaatactattgat 729
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>emb|AJ306830.1|PTR306830 Populus tremula x Populus tremuloides mRNA for aux/IAA protein
           (IAA7 gene)
          Length = 1178

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 ctgctcttgcatttctccat 217
           ||||||||||||||||||||
Sbjct: 848 ctgctcttgcatttctccat 829
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>gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete
              sequence
          Length = 107527

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 238    tggcttctgatcctttcattatcc 261
              ||||||||||||||||||| ||||
Sbjct: 104617 tggcttctgatcctttcatgatcc 104594
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>gb|U18406.1|ATU18406 Arabidopsis thaliana IAA3 (IAA3) gene, complete cds
          Length = 1031

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 238 tggcttctgatcctttcattatcc 261
           ||||||||||||||||||| ||||
Sbjct: 632 tggcttctgatcctttcatgatcc 609
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>gb|DQ243481.1| Bombyx mori chromosome 24 microsatellite S2418-R sequence
          Length = 274

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  tatacatactacatattata 71
           ||||||||||||||||||||
Sbjct: 193 tatacatactacatattata 212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,352,898
Number of Sequences: 3902068
Number of extensions: 2352898
Number of successful extensions: 42533
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42408
Number of HSP's gapped (non-prelim): 125
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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