ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast15h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRA20_CAEEL (O17844) Serpentine receptor class alpha-20 (Protein... 31 0.72
2SRA24_CAEEL (O62368) Serpentine receptor class alpha-24 (Protein... 28 4.6

>SRA20_CAEEL (O17844) Serpentine receptor class alpha-20 (Protein sra-20)|
          Length = 339

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
 Frame = -2

Query: 190 FAFT*YVNLLCYFILVRPIQSISNNQS--------LLYRTIQSIKHEF*LCLICV--IYR 41
           F F   V LL Y+  V  I+++ NN          L+   + S+ H+  +  I +  +YR
Sbjct: 32  FVFLATVILLSYYFAVLAIRALWNNNIFSNSTRLILIVCLLNSVVHQSTMMEIRIRQVYR 91

Query: 40  QIYFRRDPCRLP 5
              +  +PCRLP
Sbjct: 92  SFVYSSEPCRLP 103



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>SRA24_CAEEL (O62368) Serpentine receptor class alpha-24 (Protein sra-24)|
          Length = 339

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 136 IQSISNNQSLLYRTIQSIKHEF*LCLICV--IYRQIYFRRDPCRLP 5
           I S S    LL   + SI H+  +  I +  IYR I F  +PCRLP
Sbjct: 58  IFSNSTRLILLVCLLNSIIHQTTMLEIRIRQIYRSIVFASEPCRLP 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,008,731
Number of Sequences: 219361
Number of extensions: 586905
Number of successful extensions: 1058
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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