ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast15g03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 228 bits (115), Expect = 7e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 94 atcatatggagatgctgttgggcaccccgcggcaggtgacccccggcggcgagctggggg 153 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 4174769 atcagatggagatgctgttgggcacgccgcggcaggtgacccccggcggcgagctgggcg 4174710 Query: 154 ccagcagctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcgt 213 ||||||| ||||||||||||||||| ||||||||||||||| || |||| ||||||||| Sbjct: 4174709 ccagcagttcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgt 4174650 Query: 214 tgccccccttgatggtctcctcggcgcggcgcacgtcggccgcaaacatgccgtgcgcc 272 | | || || |||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 4174649 tccgcctctcgatggtctcctcggcgcgtcgcacatcggccgcgaacatgccgtgcgcc 4174591
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 228 bits (115), Expect = 7e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 94 atcatatggagatgctgttgggcaccccgcggcaggtgacccccggcggcgagctggggg 153 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 4174878 atcagatggagatgctgttgggcacgccgcggcaggtgacccccggcggcgagctgggcg 4174819 Query: 154 ccagcagctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcgt 213 ||||||| ||||||||||||||||| ||||||||||||||| || |||| ||||||||| Sbjct: 4174818 ccagcagttcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgt 4174759 Query: 214 tgccccccttgatggtctcctcggcgcggcgcacgtcggccgcaaacatgccgtgcgcc 272 | | || || |||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 4174758 tccgcctctcgatggtctcctcggcgcgtcgcacatcggccgcgaacatgccgtgcgcc 4174700
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 228 bits (115), Expect = 7e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 94 atcatatggagatgctgttgggcaccccgcggcaggtgacccccggcggcgagctggggg 153 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 75406 atcagatggagatgctgttgggcacgccgcggcaggtgacccccggcggcgagctgggcg 75347 Query: 154 ccagcagctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcgt 213 ||||||| ||||||||||||||||| ||||||||||||||| || |||| ||||||||| Sbjct: 75346 ccagcagttcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgt 75287 Query: 214 tgccccccttgatggtctcctcggcgcggcgcacgtcggccgcaaacatgccgtgcgcc 272 | | || || |||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 75286 tccgcctctcgatggtctcctcggcgcgtcgcacatcggccgcgaacatgccgtgcgcc 75228
>dbj|AK109440.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A07, full insert sequence Length = 1212 Score = 228 bits (115), Expect = 7e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 94 atcatatggagatgctgttgggcaccccgcggcaggtgacccccggcggcgagctggggg 153 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 1123 atcagatggagatgctgttgggcacgccgcggcaggtgacccccggcggcgagctgggcg 1064 Query: 154 ccagcagctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcgt 213 ||||||| ||||||||||||||||| ||||||||||||||| || |||| ||||||||| Sbjct: 1063 ccagcagttcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgt 1004 Query: 214 tgccccccttgatggtctcctcggcgcggcgcacgtcggccgcaaacatgccgtgcgcc 272 | | || || |||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 1003 tccgcctctcgatggtctcctcggcgcgtcgcacatcggccgcgaacatgccgtgcgcc 945
>dbj|AK121637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052A03, full insert sequence Length = 3067 Score = 228 bits (115), Expect = 7e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 94 atcatatggagatgctgttgggcaccccgcggcaggtgacccccggcggcgagctggggg 153 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 2958 atcagatggagatgctgttgggcacgccgcggcaggtgacccccggcggcgagctgggcg 2899 Query: 154 ccagcagctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcgt 213 ||||||| ||||||||||||||||| ||||||||||||||| || |||| ||||||||| Sbjct: 2898 ccagcagttcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgt 2839 Query: 214 tgccccccttgatggtctcctcggcgcggcgcacgtcggccgcaaacatgccgtgcgcc 272 | | || || |||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 2838 tccgcctctcgatggtctcctcggcgcgtcgcacatcggccgcgaacatgccgtgcgcc 2780
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 228 bits (115), Expect = 7e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 94 atcatatggagatgctgttgggcaccccgcggcaggtgacccccggcggcgagctggggg 153 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 3384 atcagatggagatgctgttgggcacgccgcggcaggtgacccccggcggcgagctgggcg 3325 Query: 154 ccagcagctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcgt 213 ||||||| ||||||||||||||||| ||||||||||||||| || |||| ||||||||| Sbjct: 3324 ccagcagttcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgt 3265 Query: 214 tgccccccttgatggtctcctcggcgcggcgcacgtcggccgcaaacatgccgtgcgcc 272 | | || || |||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 3264 tccgcctctcgatggtctcctcggcgcgtcgcacatcggccgcgaacatgccgtgcgcc 3206
>ref|XM_470535.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2718 Score = 226 bits (114), Expect = 3e-56 Identities = 159/174 (91%) Strand = Plus / Minus Query: 99 atggagatgctgttgggcaccccgcggcaggtgacccccggcggcgagctgggggccagc 158 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 2714 atggagatgctgttgggcacgccgcggcaggtgacccccggcggcgagctgggcgccagc 2655 Query: 159 agctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcgttgccc 218 || ||||||||||||||||| ||||||||||||||| || |||| |||||||||| | | Sbjct: 2654 agttcgtacggcagcaccccggcgccgcaccggttcttccggccgtggtcggcgttccgc 2595 Query: 219 cccttgatggtctcctcggcgcggcgcacgtcggccgcaaacatgccgtgcgcc 272 | || |||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 2594 ctctcgatggtctcctcggcgcgtcgcacatcggccgcgaacatgccgtgcgcc 2541
>gb|AY109573.1| Zea mays CL902_1 mRNA sequence Length = 2739 Score = 115 bits (58), Expect = 8e-23 Identities = 146/178 (82%) Strand = Plus / Minus Query: 95 tcatatggagatgctgttgggcaccccgcggcaggtgacccccggcggcgagctgggggc 154 |||||||||||||||||| ||||| |||||||| |||| |||||||||||||| || Sbjct: 2596 tcatatggagatgctgttaggcacgccgcggcacgtgannnnnggcggcgagctgggcgc 2537 Query: 155 cagcagctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcgtt 214 ||||||||||||||| |||||||| | |||| ||| ||| ||||| |||| ||||| Sbjct: 2536 cagcagctcgtacggnagcaccccggggccggaccnnttcttcctgcgctggtccgcgtt 2477 Query: 215 gccccccttgatggtctcctcggcgcggcgcacgtcggccgcaaacatgccgtgcgcc 272 | | | ||||| ||||||||||||||||||||||||| |||||| |||||||| Sbjct: 2476 tcgactatcgatggcttcctcggcgcggcgcacgtcggccgtgaacatgtcgtgcgcc 2419
>ref|XM_462649.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2700 Score = 87.7 bits (44), Expect = 2e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 153 gccagcagctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcg 212 |||| |||||||||||||||||| || |||||||| ||||| |||| | ||||||||| Sbjct: 2642 gccatcagctcgtacggcagcacgccggcgccgcaacggttgcgccgggaggggtcggca 2583 Query: 213 ttgccccccttgatggtctcctcggcgcggcgcacgtcggccgc 256 |||| || || ||| ||||||||||||||||||||||||||| Sbjct: 2582 ttgcgccgctcgatctcctcctcggcgcggcgcacgtcggccgc 2539
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 87.7 bits (44), Expect = 2e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 153 gccagcagctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcg 212 |||| |||||||||||||||||| || |||||||| ||||| |||| | ||||||||| Sbjct: 22283672 gccatcagctcgtacggcagcacgccggcgccgcaacggttgcgccgggaggggtcggca 22283613 Query: 213 ttgccccccttgatggtctcctcggcgcggcgcacgtcggccgc 256 |||| || || ||| ||||||||||||||||||||||||||| Sbjct: 22283612 ttgcgccgctcgatctcctcctcggcgcggcgcacgtcggccgc 22283569
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 87.7 bits (44), Expect = 2e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 153 gccagcagctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcg 212 |||| |||||||||||||||||| || |||||||| ||||| |||| | ||||||||| Sbjct: 34574 gccatcagctcgtacggcagcacgccggcgccgcaacggttgcgccgggaggggtcggca 34515 Query: 213 ttgccccccttgatggtctcctcggcgcggcgcacgtcggccgc 256 |||| || || ||| ||||||||||||||||||||||||||| Sbjct: 34514 ttgcgccgctcgatctcctcctcggcgcggcgcacgtcggccgc 34471
>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein (lox gene) Length = 3123 Score = 67.9 bits (34), Expect = 2e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 159 agctcgtacggcagcacccctgcgccgcaccggttccgcctgccggggtcggcgttgccc 218 ||||||||||||||||| || ||||| || ||||| |||| | ||||||| ||||||| | Sbjct: 2836 agctcgtacggcagcacgccggcgccacagcggttgcgccgggcggggtcagcgttgcgc 2777 Query: 219 cccttgatggtctcctcggcgcggcgcacgtcggccgc 256 | || ||| |||||||||||||||||| || ||||| Sbjct: 2776 cgctcgatctcctcctcggcgcggcgcacttccgccgc 2739
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 46.1 bits (23), Expect = 0.058 Identities = 29/31 (93%) Strand = Plus / Plus Query: 171 agcacccctgcgccgcaccggttccgcctgc 201 |||||| |||||||||| ||||||||||||| Sbjct: 3692524 agcaccgctgcgccgcagcggttccgcctgc 3692554
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 233 ctcggcgcggcgcacgtcggcc 254 |||||||||||||||||||||| Sbjct: 121487 ctcggcgcggcgcacgtcggcc 121466
>emb|AL645799.5| Mouse DNA sequence from clone RP23-459O24 on chromosome 13, complete sequence Length = 63170 Score = 42.1 bits (21), Expect = 0.90 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 atcaaaactacatccacaagctggc 25 |||||||||||| |||||||||||| Sbjct: 11152 atcaaaactacagccacaagctggc 11176
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 ggcgcggcgcacgtcggccgc 256 ||||||||||||||||||||| Sbjct: 2389852 ggcgcggcgcacgtcggccgc 2389872
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 tcatatggagatgctgttggg 115 ||||||||||||||||||||| Sbjct: 367 tcatatggagatgctgttggg 347
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 tcatatggagatgctgttggg 115 ||||||||||||||||||||| Sbjct: 2900 tcatatggagatgctgttggg 2880
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gcgcggcgcacgtcggccgc 256 |||||||||||||||||||| Sbjct: 3261249 gcgcggcgcacgtcggccgc 3261268
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gcgcggcgcacgtcggccgc 256 |||||||||||||||||||| Sbjct: 719576 gcgcggcgcacgtcggccgc 719595
>ref|XM_847489.1| PREDICTED: Canis familiaris similar to 6-phosphogluconolactonase (LOC610090), mRNA Length = 1089 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccgcaccggttccgcctgcc 202 |||||||||||||||||||| Sbjct: 79 ccgcaccggttccgcctgcc 98
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ccgcaccggttccgcctgcc 202 |||||||||||||||||||| Sbjct: 2302268 ccgcaccggttccgcctgcc 2302287
>emb|AL139125.18| Human DNA sequence from clone RP5-1031D4 on chromosome 10 Contains the 5' end of the gene for a novel protein (KIAA1617), a novel gene and a CpG island, complete sequence Length = 124437 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 accccgcggcaggtgacccc 136 |||||||||||||||||||| Sbjct: 40956 accccgcggcaggtgacccc 40937
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 gcgcggcgcacgtcggccgc 256 |||||||||||||||||||| Sbjct: 528221 gcgcggcgcacgtcggccgc 528240
>gb|AC026782.6| Homo sapiens chromosome 5 clone CTD-2015A6, complete sequence Length = 214025 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 cacaagctggcactaaataa 34 |||||||||||||||||||| Sbjct: 44398 cacaagctggcactaaataa 44379
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 ctcggcgcggcgcacgtcggccgc 256 ||||||||||||| |||||||||| Sbjct: 627357 ctcggcgcggcgctcgtcggccgc 627334
>emb|AJ322938.1|HSA322938 Homo sapiens genomic sequence surrounding NotI site, clone NR1-OB23R Length = 790 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 accccgcggcaggtgacccc 136 |||||||||||||||||||| Sbjct: 318 accccgcggcaggtgacccc 337
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cctcggcgcggcgcacgtcg 251 |||||||||||||||||||| Sbjct: 30828 cctcggcgcggcgcacgtcg 30809 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,770,643 Number of Sequences: 3902068 Number of extensions: 1770643 Number of successful extensions: 32496 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31820 Number of HSP's gapped (non-prelim): 676 length of query: 274 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 252 effective length of database: 17,147,199,772 effective search space: 4321094342544 effective search space used: 4321094342544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
