ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast15f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRLPI_MOUSE (Q9QUN5) Placental prolactin-like protein I precurso... 33 0.14
2NETO1_MOUSE (Q8R4I7) Neuropilin and tolloid-like protein 1 precu... 30 2.0
3NETO1_HUMAN (Q8TDF5) Neuropilin and tolloid-like protein 1 precu... 30 2.0
4LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) ... 28 7.8

>PRLPI_MOUSE (Q9QUN5) Placental prolactin-like protein I precursor (PRL-like|
           protein I) (PLP-I) (Decidualin) (Prolactin-like protein
           J) (PRL-like protein J) (PLP-J)
          Length = 212

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = +3

Query: 12  DNLLQTKPCVYKMKPREQIRNCQHEVMYTSLTEGPCQLNSHTSECRFVVSHSWYVHVKKG 191
           DNLL +   ++++  +       ++++ + LTEG C  N +T  C+ + +HS    VKK 
Sbjct: 42  DNLLSSSRHIHRVAKK------MYKILDSKLTEGVCFRNKNTKMCQTISTHS----VKKN 91

Query: 192 ESL 200
           E L
Sbjct: 92  EDL 94



to top

>NETO1_MOUSE (Q8R4I7) Neuropilin and tolloid-like protein 1 precursor|
           (Brain-specific transmembrane protein containing 2 CUB
           and 1 LDL-receptor class A domains protein 1)
          Length = 533

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +3

Query: 12  DNLLQTKPCVYKMKPREQIRNCQHEVMYTSLTEGPCQLNS---HTSEC 146
           D +L+T   V +M   E  RN + ++++TS  E PC+ N+   H++ C
Sbjct: 257 DVMLRTGLGVIRMWADEGSRNSRFQMLFTSFQEPPCEGNTFFCHSNMC 304



to top

>NETO1_HUMAN (Q8TDF5) Neuropilin and tolloid-like protein 1 precursor|
           (Brain-specific transmembrane protein containing 2 CUB
           and 1 LDL-receptor class A domains protein 1)
          Length = 533

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +3

Query: 12  DNLLQTKPCVYKMKPREQIRNCQHEVMYTSLTEGPCQLNS---HTSEC 146
           D +L+T   V +M   E  RN + ++++TS  E PC+ N+   H++ C
Sbjct: 257 DVMLRTGLGVIRMWADEGSRNSRFQMLFTSFQEPPCEGNTFFCHSNMC 304



to top

>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s|
           chain)
          Length = 1798

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 48  MKPREQIRNCQHEVMYTSLTEGPCQLNSHTSEC 146
           + PR +IR   +  +Y  +  G C    H SEC
Sbjct: 260 LDPRREIREKYYYALYELVVRGNCFCYGHASEC 292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,724,519
Number of Sequences: 219361
Number of extensions: 904113
Number of successful extensions: 1941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1941
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top