>RFA2_RAT (Q63528) Replication protein A 32 kDa subunit (RP-A) (RF-A)|
           (Replication factor-A protein 2) (p32)
          Length = 270

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = -2

Query: 350 LPALKIKEAIDYHVDVGHIYSTIDDFHYKS 261
           +P   IK+A+D+  + GHIYST+DD H+KS
Sbjct: 237 MPVASIKQAVDFLCNEGHIYSTVDDDHFKS 266

>RFA2_MOUSE (Q62193) Replication protein A 32 kDa subunit (RP-A) (RF-A)|
           (Replication factor-A protein 2) (p32)
          Length = 270

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = -2

Query: 350 LPALKIKEAIDYHVDVGHIYSTIDDFHYKS 261
           +P   IK+A+D+  + GHIYST+DD H+KS
Sbjct: 237 MPVPSIKQAVDFLCNEGHIYSTVDDDHFKS 266

>RFA2_HUMAN (P15927) Replication protein A 32 kDa subunit (RP-A) (RF-A)|
           (Replication factor-A protein 2) (p32) (p34)
          Length = 270

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = -2

Query: 335 IKEAIDYHVDVGHIYSTIDDFHYKS 261
           IK+A+D+  + GHIYST+DD H+KS
Sbjct: 242 IKQAVDFLSNEGHIYSTVDDDHFKS 266

>RFA4_HUMAN (Q13156) Replication protein A 30 kDa subunit (RP-A) (RF-A)|
           (Replication factor-A protein 4) (p30)
          Length = 261

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = -2

Query: 335 IKEAIDYHVDVGHIYSTIDDFHYKSA 258
           IKEAIDY    GHIY T+D  H+KSA
Sbjct: 235 IKEAIDYLTVEGHIYPTVDREHFKSA 260

>RFA2_PONPY (Q5RC43) Replication protein A 32 kDa subunit (RP-A) (RF-A)|
           (Replication factor-A protein 2) (p32)
          Length = 270

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = -2

Query: 335 IKEAIDYHVDVGHIYSTIDDFHYKS 261
           +K+A+D+  + GHIYST+DD H+KS
Sbjct: 242 VKQAMDFLSNEGHIYSTVDDDHFKS 266

>SRPX_RAT (Q63769) Sushi repeat-containing protein SRPX precursor (DRS|
           protein) (Down-regulated by v-SRC)
          Length = 464

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 173 PSGGYLSSTAKDRC*RVKTALGYRLSRRT-LTCSGNHRWSSRCARHQR 313
           P GGY  +    RC  ++   GY L   + L C  N RWS +    Q+
Sbjct: 72  PPGGYYKTALGTRC-DIRCRKGYELHGSSQLVCQSNRRWSDKVICKQK 118

>PYRR_FUSNN (Q8RG90) PyrR bifunctional protein [Includes: Pyrimidine operon|
           regulatory protein; Uracil phosphoribosyltransferase (EC
           2.4.2.9) (UPRTase)]
          Length = 177

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = +1

Query: 16  IMILLDDALITSRLIRF*STGILSNTCPWSIIPYIQANRCGHVSLKLRRGDASFGGIPKQ 195
           +++++DD L T R IR     ILS + P  I      +R GH  L + R D     IP  
Sbjct: 99  VVVIVDDVLYTGRTIRAGLDAILSKSRPAKIQLACLIDR-GHRELPI-RADFIGKNIPTS 156

Query: 196 HS 201
           HS
Sbjct: 157 HS 158

>RFA2_SCHPO (Q92373) Replication factor-A protein 2 (Single-stranded|
           DNA-binding protein P30 subunit)
          Length = 279

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 347 PALKIKEAIDYHVDVGHIYSTIDDFHYKSAFVD 249
           P + +    D+    G IY+TID+ H+KS   D
Sbjct: 246 PGIDLTAVTDFLQQEGIIYTTIDENHFKSVLQD 278

>RNAS1_HORSE (P00674) Ribonuclease pancreatic (EC 3.1.27.5) (RNase 1) (RNase A)|
          Length = 128

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 274 STTSQRSSTKSVTECRLHSLASVLSCAA*VSPRRKHLL 161
           S   Q SS+  +T+CRL S +   +CA   S + +H++
Sbjct: 70  SNCYQSSSSMHITDCRLTSGSKYPNCAYQTSQKERHII 107

>RNS1B_PYGNE (Q8SPN3) Ribonuclease 1B pancreatic precursor (EC 3.1.27.5) (RNase|
           1B)
          Length = 156

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 256 SSTKSVTECRLHSLASVLSCAA*VSPRRKHLL 161
           +S   +TECRL + +   +CA   SP+ +H++
Sbjct: 104 NSKMHITECRLTNGSKYPNCAYQTSPKERHII 135

>RPOC_MYCPU (Q98Q24) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1426

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 359 RFRLPALKIKEAIDYHVDVGHIYSTIDDFHYKSAFVD*VCNRVPSSLASI 210
           R  +P  K+++  +   D G+I+ST+  F +  AF +       SS++SI
Sbjct: 621 RVAIPFKKLQKTFNLKGDKGYIFSTVGKFIFNQAFPENFPFIFDSSVSSI 670

>YN81_CAEEL (Q03610) Hypothetical protein ZC84.1 in chromosome III|
          Length = 1416

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -3

Query: 268 TSQRSSTKSVTECRLHSLASVLSCAA*VSPRRKHLLAGV*ERHDHIC*PECRE*CS 101
           T QR S +  TE  +HS   + SCAA VS         +     H+C P     CS
Sbjct: 269 TCQRGSPQYSTESAVHSERPITSCAASVSCANDFQCTAI--GSQHLCCPTPGSVCS 322

>SPG16_MOUSE (Q8K450) Sperm-associated antigen 16 protein (PF20 protein homolog)|
          Length = 639

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 167 MLPSGGYLSSTAKDRC*RVKTALGYRLSRRTLTCSGNHRWSSRCARHQRGSR 322
           M P   YL S ++DR  ++   +G       LT SG+  W S C  H  GS+
Sbjct: 368 MHPCRDYLISCSEDRLWKM---VGLPQGNVLLTGSGHTDWLSGCCFHPSGSK 416

>RNAS1_PREEN (P19644) Ribonuclease pancreatic (EC 3.1.27.5) (RNase 1) (RNase A)|
          Length = 128

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 256 SSTKSVTECRLHSLASVLSCAA*VSPRRKHLL 161
           +S   +TECRL + +   +CA   SP+ +H++
Sbjct: 76  NSRMHITECRLTNGSKYPNCAYGTSPKERHII 107

>YGL4_BACST (P32814) Hypothetical 35.5 kDa protein in gldA 3'region (ORF4)|
          Length = 301

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 112 PYIQANRCGHVSLKLRRGDASFGGIPKQHS*GQMLASED 228
           PY   N   +VS  LR GDA   G P + S G  LA+ +
Sbjct: 160 PYFDVNCTNYVSQCLRAGDAPMRGYPNRSS-GWWLANNN 197

>LFC_TACTR (P28175) Limulus clotting factor C precursor (EC 3.4.21.84) (FC)|
           [Contains: Limulus clotting factor C heavy chain;
           Limulus clotting factor C light chain; Limulus clotting
           factor C chain A; Limulus clotting factor C chain B]
          Length = 1019

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 104 ASFPTFRLTDVV-MSLSNSGEEMLPSGGYLS-STAKDRC*RVKTALGYRLSRRTLTCSGN 277
           +SFP   + +   +S    G+   PSG  +  +T +  C     +  Y + + TLTC GN
Sbjct: 189 SSFPPKCIRECAKVSSPEHGKVNAPSGNMIEGATLRFSC----DSPYYLIGQETLTCQGN 244

Query: 278 HRWSSR 295
            +WS +
Sbjct: 245 GQWSGQ 250

>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex|
           component Sec8)
          Length = 1053

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 116 TFRLTDVVMSLSNSGEEMLPSG 181
           TFR TD  +S+SN G +++  G
Sbjct: 564 TFRFTDATVSISNQGADLIRQG 585


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,960,792
Number of Sequences: 219361
Number of extensions: 893146
Number of successful extensions: 1972
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1972
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)