>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7059

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 36   ITGVLHLLVSLERRQYTTPLNDPYTHSYD*SI 131
            I G LHLL+ L RRQ T+ L      SYD SI
Sbjct: 6693 IIGGLHLLIGLYRRQQTSNLVIQEFVSYDSSI 6724

>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7094

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 36   ITGVLHLLVSLERRQYTTPLNDPYTHSYD*SI 131
            I G LHLL+ L RRQ T+ L      SYD SI
Sbjct: 6693 IIGGLHLLIGLYRRQQTSNLVIQEFVSYDSSI 6724

>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 36   ITGVLHLLVSLERRQYTTPLNDPYTHSYD*SI 131
            I G LHLL+ L RRQ T+ L      SYD SI
Sbjct: 6693 IIGGLHLLIGLYRRQQTSNLVIQEFVSYDSSI 6724

>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 36   ITGVLHLLVSLERRQYTTPLNDPYTHSYD*SI 131
            I G LHLL+ L RRQ T+ L      SYD SI
Sbjct: 6693 IIGGLHLLIGLYRRQQTSNLVIQEFVSYDSSI 6724


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,711,366
Number of Sequences: 219361
Number of extensions: 292519
Number of successful extensions: 469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 80,573,946
effective HSP length: 30
effective length of database: 73,993,116
effective search space used: 1775834784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)