ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast15e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.0
2gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, com... 38 8.0
3gb|CP000088.1| Thermobifida fusca YX, complete genome 38 8.0
4dbj|AP006585.1| Synechocystis sp. PCC 6803 plasmid pSYSX DNA, co... 38 8.0
5gb|AY897209.1| Zea mays laccase 1 (LAC1) gene, complete cds 38 8.0
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.0
7dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.0
8emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 8.0
9gb|AF115313.1|AF115313 Thermomonospora curvata PkwR (pkwR) and P... 38 8.0
10gb|AC131660.4| Mus musculus BAC clone RP23-241P13 from 9, comple... 38 8.0
11emb|AL805907.5| Mouse DNA sequence from clone RP23-262M20 on chr... 38 8.0

>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
            OSJNBa0087J09, complete sequence
          Length = 153351

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 104  ttacacacactcatatgactgat 126
            |||||||||||||||||| ||||
Sbjct: 5108 ttacacacactcatatgattgat 5086



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>gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, complete sequence
          Length = 174095

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 100  atccttacacacactcata 118
            |||||||||||||||||||
Sbjct: 6051 atccttacacacactcata 6033



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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 135   aacagacccaccgaactgaactg 157
             ||||||| |||||||||||||||
Sbjct: 63454 aacagacacaccgaactgaactg 63476



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>dbj|AP006585.1| Synechocystis sp. PCC 6803 plasmid pSYSX DNA, complete sequence
          Length = 106004

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    acgatgtgctcataattac 40
             |||||||||||||||||||
Sbjct: 87640 acgatgtgctcataattac 87658



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>gb|AY897209.1| Zea mays laccase 1 (LAC1) gene, complete cds
          Length = 3771

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 27   gtgctcataattactggcg 45
            |||||||||||||||||||
Sbjct: 1345 gtgctcataattactggcg 1327



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 104      ttacacacactcatatgactgat 126
                |||||||||||||||||| ||||
Sbjct: 18477102 ttacacacactcatatgattgat 18477080



 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 104      ttacacacactcatatgactgat 126
                |||||||||||||||||| ||||
Sbjct: 18465643 ttacacacactcatatgattgat 18465621



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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0463D04
          Length = 145828

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 104    ttacacacactcatatgactgat 126
              |||||||||||||||||| ||||
Sbjct: 138976 ttacacacactcatatgattgat 138954



 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 104    ttacacacactcatatgactgat 126
              |||||||||||||||||| ||||
Sbjct: 127517 ttacacacactcatatgattgat 127495



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 3       gggccaggtcgacgatgtc 21
               |||||||||||||||||||
Sbjct: 4624625 gggccaggtcgacgatgtc 4624643



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>gb|AF115313.1|AF115313 Thermomonospora curvata PkwR (pkwR) and PkwA (pkwA) genes, complete
            cds
          Length = 4619

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 135  aacagacccaccgaactgaactg 157
            ||||||| |||||||||||||||
Sbjct: 4437 aacagacacaccgaactgaactg 4415



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>gb|AC131660.4| Mus musculus BAC clone RP23-241P13 from 9, complete sequence
          Length = 220247

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 100    atccttacacacactcata 118
              |||||||||||||||||||
Sbjct: 149930 atccttacacacactcata 149912



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>emb|AL805907.5| Mouse DNA sequence from clone RP23-262M20 on chromosome X, complete
              sequence
          Length = 221439

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 25     atgtgctcataattactgg 43
              |||||||||||||||||||
Sbjct: 171883 atgtgctcataattactgg 171865


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,066,410
Number of Sequences: 3902068
Number of extensions: 1066410
Number of successful extensions: 78022
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77899
Number of HSP's gapped (non-prelim): 123
length of query: 165
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 143
effective length of database: 17,147,199,772
effective search space: 2452049567396
effective search space used: 2452049567396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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