ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast15e05 |
|---|---|
| Clone Library Name | barley_pub |
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 32.0 bits (71), Expect = 0.41 Identities = 19/60 (31%), Positives = 30/60 (50%) Frame = +3 Query: 81 YLSRLQRIQPTARWEGSFEAADHGTSAGPTYPMARALGGASPPNVGRGERRAQASHASLD 260 YL + IQP + E A+ T+ GPT + SPPN+ G +R+++ SL+ Sbjct: 444 YLFQKPDIQPEEQ-EAVGSPAEAATAMGPTVLEGQVYTNTSPPNLNTGRQRSRSYDRSLE 502
>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC| 3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matrix associated actin dependent regulator of chromatin subfamily A member 2) (hBRM) Length = 1586 Score = 31.6 bits (70), Expect = 0.54 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +1 Query: 100 GFSPPPVGKGASRRPITAHRPDRLTPWHGPLGAQAPLTWVGASGGP 237 G PP G G + P+ H ++P PLGA ++ + GGP Sbjct: 98 GMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGP 143
>PTH_NANEQ (P61235) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 115 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +3 Query: 210 NVGRGERRAQASHASLDSDLKAFSHN 287 ++G+G+ AQ +HASLD+ LK + +N Sbjct: 12 DIGKGKLCAQVAHASLDAALKVYRNN 37
>ABL1_MOUSE (P00520) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.10.2)| (p150) (c-ABL) (Abelson murine leukemia viral oncogene homolog 1) Length = 1123 Score = 30.0 bits (66), Expect = 1.6 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = +2 Query: 5 IRATWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPLG-RELRGGRSRHIGRTDLP 175 +RA W W DR S A + +SS D + LG R RGG + +LP Sbjct: 472 MRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKRGTRGGAGSMLQAPELP 529
>RNPA_THEFI (Q7X5L2) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 240 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +3 Query: 105 QPTARWEGSFEAADHGTSAGPTYPMARALGGASPPNVGRGE 227 +P+ RW+G A + G TY A G +PP +G G+ Sbjct: 64 RPSLRWDGGPGKAFPKPADGATYAKEAAEKGMTPPQLGAGQ 104
>ABL_MLVAB (P00521) Tyrosine-protein kinase transforming protein Abl (EC| 2.7.10.2) (V-abl) Length = 746 Score = 30.0 bits (66), Expect = 1.6 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = +2 Query: 5 IRATWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPLG-RELRGGRSRHIGRTDLP 175 +RA W W DR S A + +SS D + LG R RGG + +LP Sbjct: 358 MRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKRGTRGGAGSMLQAPELP 415
>FHOD1_HUMAN (Q9Y613) FH1/FH2 domain-containing protein (Formin homolog| overexpressed in spleen) (FHOS) (Formin homology 2 domain-containing protein 1) Length = 1163 Score = 29.6 bits (65), Expect = 2.0 Identities = 25/74 (33%), Positives = 33/74 (44%) Frame = -1 Query: 223 PRPTLGGLAPPRARAMG*VGPADVP*SAASKLPSQRAVG*ILCRRLKYATGHCKWQGGLA 44 P P G PP + P VP S+A LP++R + R LK A GH G++ Sbjct: 590 PPPIKGPFPPPPPLPLAAPLPHSVPDSSA--LPTKRKTVKLFWRELKLAGGH-----GVS 642 Query: 43 ATIH*DPAPCRTDW 2 A+ PC T W Sbjct: 643 ASRF---GPCATLW 653
>AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 605 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/67 (28%), Positives = 25/67 (37%) Frame = +1 Query: 34 GSWQQGHPATYNAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLTPWHGPLGAQAPLT 213 GSWQ S V G P G G + + + +R PW G A A Sbjct: 532 GSWQPAQGVRLRTDSGTYPVWSGAVDLPAGVGFEYKYV---KLNRTAPWSGSRAATASPP 588 Query: 214 WVGASGG 234 W+ + GG Sbjct: 589 WMTSGGG 595
>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)| (Oncogene GLI) Length = 1106 Score = 29.6 bits (65), Expect = 2.0 Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 15/70 (21%) Frame = -3 Query: 263 RIQASMRRLGP---PLAPTHVRGACAPKGPCH-----GVSR-SGRCAVIGRLEAPFPT-- 117 R +A + GP P P H G+ PCH G +R S R A RL P PT Sbjct: 940 RAKAPVNTYGPGFGPNLPNHKSGSYPTPSPCHENFVVGANRASHRAAAPPRLLPPLPTCY 999 Query: 116 ----GGGLNP 99 GG NP Sbjct: 1000 GPLKVGGTNP 1009
>ABL1_HUMAN (P00519) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.10.2)| (p150) (c-ABL) (Abelson murine leukemia viral oncogene homolog 1) Length = 1130 Score = 29.3 bits (64), Expect = 2.7 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = +2 Query: 5 IRATWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPLGRE-LRGGRSRHIGRTDLP 175 +RA W W DR S A + +SS D + LG++ +RG S + +LP Sbjct: 472 MRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKQGVRGAVSTLLQAPELP 529
>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2| Length = 1516 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = +3 Query: 81 YLSRLQRIQPTARWEGSFEAADHGTSAGPTYPMARALGGASPPNVGRGERRAQASHASL 257 YL + +QP + E + + GPT + SPPN+ G +R+++ SL Sbjct: 446 YLFQKPEVQPEEQ-EAVSSSTQAAAAVGPTVLEGQVYTNTSPPNLSTGRQRSRSYDRSL 503
>S2A4R_HUMAN (Q9NR83) SLC2A4 regulator (GLUT4 enhancer factor) (GEF) (Huntington| disease gene regulatory region-binding protein 1) (HDBP-1) Length = 387 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Frame = +1 Query: 112 PPVGK--GASRRPITAHRPDRLTPWHGPLGAQAPLTWVGASGGPR 240 PP G G + RP P LGA P TW GA+ GPR Sbjct: 40 PPQGSSVGGGFAGLEFARPQESEPRASDLGA--PRTWTGAAAGPR 82
>PHOSP_CDVO (P06940) Phosphoprotein (Protein P)| Length = 507 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 150 GTSAGPTYPMARALGGASPPNVGRGERRAQASHASLDSDLK 272 G+++G T ++ GG+S P+V G R A +A + K Sbjct: 246 GSTSGATQSALKSTGGSSEPSVSAGNVRQPAMNAKMTQKCK 286
>PANB_WIGBR (Q8D2A5) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC| 2.1.2.11) (Ketopantoate hydroxymethyltransferase) Length = 265 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 126 LPNGRWAESFADDLNTRRGIVSGRVALLPRSTEIQ 22 L G W +LNTR V G + L P+S +Q Sbjct: 113 LEGGLWVSDIIHELNTRSIPVCGHIGLTPQSINMQ 147
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = +1 Query: 58 ATYNAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLTPWHGPL 192 ++ N PSR+ + S PP + + HRP R W PL Sbjct: 860 SSLNLPSRLPHTWRRLSEPPTRAVKPQVRLPFHRPPRAGAWRAPL 904
>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +2 Query: 8 RATWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPL-GRELRGGRSRHIGRTDL 172 R W W+ RGS + +P +P+R+ K A L G + G R I + L Sbjct: 269 RPLWAWLQKFRGSSSEVPCNLPQRLADRDLKRLAASDLEGCAVASGPFRPIQTSQL 324
>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 28.1 bits (61), Expect = 5.9 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = +2 Query: 8 RATWGWISVDRGSKATLPLTMPRRV 82 R W W+ RGS + +P ++P+R+ Sbjct: 269 RPLWAWLQKFRGSSSEVPCSLPQRL 293
>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 28.1 bits (61), Expect = 5.9 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = +2 Query: 8 RATWGWISVDRGSKATLPLTMPRRV 82 R W W+ RGS + +P ++P+R+ Sbjct: 269 RPLWAWLQKFRGSSSEVPCSLPQRL 293
>SMAD6_CHICK (Q9W734) Mothers against decapentaplegic homolog 6 (SMAD 6)| (Mothers against DPP homolog 6) (Smad6) Length = 431 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +3 Query: 165 PTYPMARALGGASPPNVGRGERRAQASHASLDSDLKAFSH 284 P P GGASPP G GE R++ L+ +LKA ++ Sbjct: 74 PPPPPPPPPGGASPPGPGGGEARSRL--VLLERELKAVTY 111
>RTN4R_RAT (Q99M75) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 27.7 bits (60), Expect = 7.7 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +2 Query: 8 RATWGWISVDRGSKATLPLTMPRRV 82 R W W+ RGS + +P +P+R+ Sbjct: 269 RPLWAWLQKFRGSSSEVPCNLPQRL 293
>PO5FM_HUMAN (Q9BZV7) POU domain, class 5, transcription factor 1-like protein 2| Length = 359 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/45 (35%), Positives = 17/45 (37%) Frame = +1 Query: 103 FSPPPVGKGASRRPITAHRPDRLTPWHGPLGAQAPLTWVGASGGP 237 FSPPP G G PW G PLTW+ G P Sbjct: 11 FSPPPGGGGDG-------------PWGAEPGWVDPLTWLSFQGPP 42
>PO5FL_HUMAN (Q06416) POU domain, class 5, transcription factor 1-like protein 1| (Octamer-binding protein 3-like) Length = 359 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/45 (35%), Positives = 17/45 (37%) Frame = +1 Query: 103 FSPPPVGKGASRRPITAHRPDRLTPWHGPLGAQAPLTWVGASGGP 237 FSPPP G G PW G PLTW+ G P Sbjct: 11 FSPPPGGGGDG-------------PWGAEPGWVDPLTWLSFQGPP 42 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,833,701 Number of Sequences: 219361 Number of extensions: 1077322 Number of successful extensions: 3724 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3505 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3712 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
