ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast15d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA, complete cds Length = 1067 Score = 170 bits (86), Expect = 2e-39 Identities = 189/224 (84%), Gaps = 17/224 (7%) Strand = Plus / Minus Query: 138 gcttcgatctgaaccaaacaacatgacgttcttcacatcatcgagacattc-------tg 190 ||||||||||||||||||||||| || ||||||||||||||||| |||||| || Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattcgtgagactg 873 Query: 191 accaccacgcacgcacttttttatgttgccgaaggcatcatggaaaccaaacaccgaacg 250 |||||||| ||||||||||| |||||||||||||||| ||||| ||||||| Sbjct: 872 cccaccacgtacgcacttttt-atgttgccgaaggcattatgga---------ccgaacg 823 Query: 251 acccttcacatggatggcttagtagtccttgctggcgacgggggtgtggttgtcgcacat 310 || |||| ||||| ||||||||||||| |||| |||||||||| |||||| ||| ||||| Sbjct: 822 actcttcccatggctggcttagtagtcgttgccggcgacggggctgtggtcgtcccacat 763 Query: 311 gtacaggtaccggtagacgatgccggcgaggccaccgccgatga 354 ||| ||||| ||||| |||| ||||||||||||||||||||||| Sbjct: 762 gtataggtatcggtaaacgacgccggcgaggccaccgccgatga 719 Score = 139 bits (70), Expect = 7e-30 Identities = 96/104 (92%), Gaps = 3/104 (2%) Strand = Plus / Minus Query: 15 tgttcttattgaatcgcataaggaaactcaactgaagaattctcaaaccccaacaacttc 74 |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct: 1039 tgttcttattgaatcgcataaggaaactcaactgaaaaattctcaaaccccaccaacttc 980 Query: 75 acaacatcacattatattacagatagagaagcatgcatcatcca 118 ||||||||||||| ||||||||| || | ||||||||||||| Sbjct: 979 acaacatcacatt---ttacagataaaggaacatgcatcatcca 939
>gb|AY525641.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;3 mRNA, complete cds Length = 829 Score = 135 bits (68), Expect = 1e-28 Identities = 83/88 (94%) Strand = Plus / Minus Query: 267 gcttagtagtccttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtag 326 ||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 800 gcttagtagtcgttgccggcgacggcggtgtggtcgtcgcacatgtacaggtaccggtag 741 Query: 327 acgatgccggcgaggccaccgccgatga 354 |||| ||||||||||||||||||||||| Sbjct: 740 acgacgccggcgaggccaccgccgatga 713
>gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;2 mRNA, complete cds Length = 853 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Minus Query: 269 ttagtagtccttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagac 328 ||||||||| |||| |||||||| | |||||| |||||||||||||| |||||||||||| Sbjct: 801 ttagtagtcgttgccggcgacggagctgtggtcgtcgcacatgtacacgtaccggtagac 742 Query: 329 gatgccggcgaggccaccgccgatga 354 || ||||||||||||||||||||||| Sbjct: 741 gacgccggcgaggccaccgccgatga 716
>gb|AY525639.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;1 mRNA, complete cds Length = 817 Score = 115 bits (58), Expect = 1e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 265 tggcttagtagtccttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggt 324 ||||||||||||| |||| |||||||| | |||||| |||||||||||| ||||| |||| Sbjct: 806 tggcttagtagtcgttgccggcgacggagctgtggtcgtcgcacatgtataggtatcggt 747 Query: 325 agacgatgccggcgaggccaccgccgatga 354 |||||| ||||||||||||||||||||||| Sbjct: 746 agacgacgccggcgaggccaccgccgatga 717
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 79.8 bits (40), Expect = 5e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| |||||||| Sbjct: 13251125 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 13251066 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 13251065 ggccgccgccga 13251054
>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0427E01 Length = 146395 Score = 79.8 bits (40), Expect = 5e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| |||||||| Sbjct: 12935 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 12876 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 12875 ggccgccgccga 12864
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 79.8 bits (40), Expect = 5e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| |||||||| Sbjct: 168313 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 168254 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 168253 ggccgccgccga 168242
>dbj|AK104464.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C06, full insert sequence Length = 1194 Score = 79.8 bits (40), Expect = 5e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| |||||||| Sbjct: 825 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 766 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 765 ggccgccgccga 754
>dbj|AK104377.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G09, full insert sequence Length = 1196 Score = 79.8 bits (40), Expect = 5e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| |||||||| Sbjct: 827 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 768 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 767 ggccgccgccga 756
>dbj|AK104270.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F03, full insert sequence Length = 1214 Score = 79.8 bits (40), Expect = 5e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| |||||||| Sbjct: 827 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 768 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 767 ggccgccgccga 756
>dbj|AK099616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050J20, full insert sequence Length = 1197 Score = 79.8 bits (40), Expect = 5e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| |||||||| Sbjct: 828 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 769 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 768 ggccgccgccga 757
>dbj|AK099141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055A02, full insert sequence Length = 1195 Score = 79.8 bits (40), Expect = 5e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| |||||||| Sbjct: 826 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 767 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 766 ggccgccgccga 755
>dbj|AK099015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H02, full insert sequence Length = 1202 Score = 79.8 bits (40), Expect = 5e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| |||||||| Sbjct: 828 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 769 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 768 ggccgccgccga 757
>dbj|AK073531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044F19, full insert sequence Length = 1220 Score = 79.8 bits (40), Expect = 5e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| |||||||| Sbjct: 826 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 767 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 766 ggccgccgccga 755
>dbj|AK100193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036J06, full insert sequence Length = 1074 Score = 71.9 bits (36), Expect = 1e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339 ||||||| ||||||| ||||| | |||||||||| | ||| |||||||||| |||||||| Sbjct: 705 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaacggtagacgaggccggcga 646 Query: 340 ggccaccgccga 351 |||| ||||||| Sbjct: 645 ggccgccgccga 634
>ref|XM_470213.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 753 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || ||||||||||||||||||||||| Sbjct: 699 gtagatgacgccggcgaggccaccgccgatga 668
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Plus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || ||||||||||||||||||||||| Sbjct: 2544783 gtagatgacgccggcgaggccaccgccgatga 2544814
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || ||||||||||||||||||||||| Sbjct: 125311 gtagatgacgccggcgaggccaccgccgatga 125280
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Plus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || ||||||||||||||||||||||| Sbjct: 2544893 gtagatgacgccggcgaggccaccgccgatga 2544924
>dbj|D25534.1|RICYK333 Oryza sativa yk333 mRNA for gamma-Tip, complete cds Length = 1080 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || ||||||||||||||||||||||| Sbjct: 777 gtagatgacgccggcgaggccaccgccgatga 746
>dbj|AK104123.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C12, full insert sequence Length = 1034 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || ||||||||||||||||||||||| Sbjct: 786 gtagatgacgccggcgaggccaccgccgatga 755
>dbj|AK068986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003E16, full insert sequence Length = 1082 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || ||||||||||||||||||||||| Sbjct: 788 gtagatgacgccggcgaggccaccgccgatga 757
>dbj|AK059438.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G11, full insert sequence Length = 551 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || ||||||||||||||||||||||| Sbjct: 312 gtagatgacgccggcgaggccaccgccgatga 281
>dbj|AK058322.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B06, full insert sequence Length = 1055 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || ||||||||||||||||||||||| Sbjct: 784 gtagatgacgccggcgaggccaccgccgatga 753
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Minus Query: 332 gccggcgaggccaccgccgatga 354 ||||||||||||||||||||||| Sbjct: 505313 gccggcgaggccaccgccgatga 505291 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 gccggcgaggccaccgccga 351 |||||||||||||||||||| Sbjct: 1274146 gccggcgaggccaccgccga 1274165
>dbj|AK060994.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E02, full insert sequence Length = 870 Score = 46.1 bits (23), Expect = 0.076 Identities = 29/31 (93%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatg 353 ||||| || |||||||||||||||||||||| Sbjct: 622 gtagatgacgccggcgaggccaccgccgatg 592
>emb|BX470264.22| Zebrafish DNA sequence from clone CH211-252F13 in linkage group 7, complete sequence Length = 168673 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 ttcacaacatcacattatatt 92 ||||||||||||||||||||| Sbjct: 78807 ttcacaacatcacattatatt 78827
>ref|XM_236362.3| PREDICTED: Rattus norvegicus hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 (predicted) (Herc1_predicted), mRNA Length = 15132 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 15 tgttcttattgaatcgcataaggaaactc 43 |||||||||||| ||||||||||||||| Sbjct: 10797 tgttcttattgatgcgcataaggaaactc 10825
>gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosome 13, complete sequence Length = 191162 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ggaaactcaactgaagaatt 55 |||||||||||||||||||| Sbjct: 13923 ggaaactcaactgaagaatt 13942
>ref|NM_020416.2| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform (PPP2R2C), transcript variant 1, mRNA Length = 4117 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 3856 aaaccccaacaacttcacaa 3837
>ref|NM_181876.1| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform (PPP2R2C), transcript variant 2, mRNA Length = 4087 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 3826 aaaccccaacaacttcacaa 3807
>gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, complete sequence Length = 168683 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ggaaactcaactgaagaatt 55 |||||||||||||||||||| Sbjct: 136133 ggaaactcaactgaagaatt 136114
>gb|BT016300.1| Zea mays clone Contig133 mRNA sequence Length = 1112 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || |||||||||||| |||||||||| Sbjct: 796 gtagatgacgccggcgaggccgccgccgatga 765
>gb|AC147922.2| Xenopus tropicalis clone CH216-98P3, complete sequence Length = 171597 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ttcttattgaatcgcataag 36 |||||||||||||||||||| Sbjct: 92152 ttcttattgaatcgcataag 92171
>gb|AC006012.2| Homo sapiens PAC clone RP5-942I16 from 7, complete sequence Length = 121598 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ggcatcatggaaaccaaaca 243 |||||||||||||||||||| Sbjct: 113843 ggcatcatggaaaccaaaca 113824
>gb|AC117212.5| Mus musculus BAC clone RP23-302A24 from chromosome 6, complete sequence Length = 212735 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 57462 aaaccccaacaacttcacaa 57481
>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein Length = 1020 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || |||||||||||| |||||||||| Sbjct: 762 gtagatgacgccggcgaggccgccgccgatga 731
>gb|BC021735.2| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform, mRNA (cDNA clone IMAGE:4816112) Length = 1172 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 918 aaaccccaacaacttcacaa 899
>gb|BC045682.1| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform, mRNA (cDNA clone IMAGE:5300526) Length = 2161 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 1900 aaaccccaacaacttcacaa 1881
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 gccggcgaggccaccgccga 351 |||||||||||||||||||| Sbjct: 4535021 gccggcgaggccaccgccga 4535040
>dbj|AK127386.1| Homo sapiens cDNA FLJ45468 fis, clone BRSTN2015788 Length = 1737 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 1499 aaaccccaacaacttcacaa 1480
>gb|AC068733.12| Homo sapiens chromosome 11, clone RP11-304C12, complete sequence Length = 191656 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 tctcaaaccccaacaacttcacaa 78 ||||||||||||||| |||||||| Sbjct: 107696 tctcaaaccccaacaccttcacaa 107719
>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete sequence Length = 222430 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tctgaaccaaacaacatgac 164 |||||||||||||||||||| Sbjct: 111593 tctgaaccaaacaacatgac 111574
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cggcgaggccaccgccgatg 353 |||||||||||||||||||| Sbjct: 1656225 cggcgaggccaccgccgatg 1656206
>gb|AY243803.1| Zea mays tonoplast water channel (TIP1-1) mRNA, complete cds Length = 1039 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || |||||||||||| |||||||||| Sbjct: 700 gtagatgacgccggcgaggccgccgccgatga 669
>gb|AC084327.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-367K14, complete sequence Length = 108667 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 32732 aaaccccaacaacttcacaa 32713
>gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, complete sequence Length = 160943 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 aaaccccaacaacttcacaa 78 |||||||||||||||||||| Sbjct: 82311 aaaccccaacaacttcacaa 82330
>gb|AY104464.1| Zea mays PCO114899 mRNA sequence Length = 1167 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || |||||||||||| |||||||||| Sbjct: 795 gtagatgacgccggcgaggccgccgccgatga 764
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tctgaaccaaacaacatgac 164 |||||||||||||||||||| Sbjct: 1893522 tctgaaccaaacaacatgac 1893503
>gb|AF037061.1|AF037061 Zea mays tonoplast intrinsic protein (ZmTIP1) mRNA, complete cds Length = 1097 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || |||||||||||| |||||||||| Sbjct: 792 gtagatgacgccggcgaggccgccgccgatga 761
>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA, complete cds Length = 1133 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 323 gtagacgatgccggcgaggccaccgccgatga 354 ||||| || |||||||||||| |||||||||| Sbjct: 793 gtagatgacgccggcgaggccgccgccgatga 762 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,050,589 Number of Sequences: 3902068 Number of extensions: 3050589 Number of successful extensions: 57046 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56790 Number of HSP's gapped (non-prelim): 254 length of query: 354 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 332 effective length of database: 17,147,199,772 effective search space: 5692870324304 effective search space used: 5692870324304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
