ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast15d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC151840.5| Mus musculus BAC clone RP23-150L19 from chromosom... 44 0.35
2gb|AC147051.2| Mus musculus BAC clone RP23-90H22 from chromosome... 42 1.4
3gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosom... 42 1.4
4gb|AC127276.3| Mus musculus BAC clone RP24-221M17 from chromosom... 42 1.4
5gb|AC112146.3| Mus musculus BAC clone RP23-101G11 from 12, compl... 42 1.4
6gb|AC102735.9| Mus musculus chromosome 5, clone RP24-237I4, comp... 40 5.4
7ref|XM_459679.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 5.4
8emb|AL139350.17| Human DNA sequence from clone RP11-307O10 on ch... 40 5.4
9emb|AL121781.38|HSJ1164C1 Human DNA sequence from clone RP5-1164... 40 5.4
10emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 40 5.4
11gb|AC156631.2| Mus musculus BAC clone RP24-501O22 from chromosom... 40 5.4
12emb|CR384101.11| Zebrafish DNA sequence from clone DKEY-211G8 in... 40 5.4
13gb|BC039673.1| Homo sapiens, clone IMAGE:5170855, mRNA 40 5.4
14emb|AL626786.11| Mouse DNA sequence from clone RP23-269L6 on chr... 40 5.4

>gb|AC151840.5| Mus musculus BAC clone RP23-150L19 from chromosome 18, complete
             sequence
          Length = 197898

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 326   tcctccctggaattccttcctt 347
             ||||||||||||||||||||||
Sbjct: 74525 tcctccctggaattccttcctt 74504



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>gb|AC147051.2| Mus musculus BAC clone RP23-90H22 from chromosome 8, complete sequence
          Length = 224213

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     tacaggcagcaagaagagaca 71
              |||||||||||||||||||||
Sbjct: 174420 tacaggcagcaagaagagaca 174400



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>gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosome 12, complete
             sequence
          Length = 199956

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 55    ggcagcaagaagagacaaaca 75
             |||||||||||||||||||||
Sbjct: 30414 ggcagcaagaagagacaaaca 30394



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>gb|AC127276.3| Mus musculus BAC clone RP24-221M17 from chromosome 8, complete sequence
          Length = 120935

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    tacaggcagcaagaagagaca 71
             |||||||||||||||||||||
Sbjct: 36269 tacaggcagcaagaagagaca 36249



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>gb|AC112146.3| Mus musculus BAC clone RP23-101G11 from 12, complete sequence
          Length = 188819

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 55     ggcagcaagaagagacaaaca 75
              |||||||||||||||||||||
Sbjct: 140314 ggcagcaagaagagacaaaca 140294



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>gb|AC102735.9| Mus musculus chromosome 5, clone RP24-237I4, complete sequence
          Length = 167871

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    gttgatatgaaaaaactagc 258
              ||||||||||||||||||||
Sbjct: 107911 gttgatatgaaaaaactagc 107892



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>ref|XM_459679.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E09097g)
           partial mRNA
          Length = 726

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  aagagacaaacaaactagtt 83
           ||||||||||||||||||||
Sbjct: 494 aagagacaaacaaactagtt 513



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>emb|AL139350.17| Human DNA sequence from clone RP11-307O10 on chromosome 20 Contains part
              of a novel gene, an EST, an STS and GSSs, complete sequence
          Length = 181585

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    tagcacacggccataaaagg 312
              ||||||||||||||||||||
Sbjct: 173355 tagcacacggccataaaagg 173374



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>emb|AL121781.38|HSJ1164C1 Human DNA sequence from clone RP5-1164C1 on chromosome 20 Contains
             (part of) two putative novel genes, ESTs, STSs and GSSs,
             complete sequence
          Length = 178568

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   tagcacacggccataaaagg 312
             ||||||||||||||||||||
Sbjct: 78275 tagcacacggccataaaagg 78294



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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     aagagacaaacaaactagtt 83
              ||||||||||||||||||||
Sbjct: 662378 aagagacaaacaaactagtt 662359



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>gb|AC156631.2| Mus musculus BAC clone RP24-501O22 from chromosome 9, complete sequence
          Length = 165660

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   tccctggaattccttccttt 348
             ||||||||||||||||||||
Sbjct: 67507 tccctggaattccttccttt 67488



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>emb|CR384101.11| Zebrafish DNA sequence from clone DKEY-211G8 in linkage group 19,
             complete sequence
          Length = 110664

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   attcatctcaaatacacaag 236
             ||||||||||||||||||||
Sbjct: 13654 attcatctcaaatacacaag 13635



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>gb|BC039673.1| Homo sapiens, clone IMAGE:5170855, mRNA
          Length = 918

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 tagcacacggccataaaagg 312
           ||||||||||||||||||||
Sbjct: 588 tagcacacggccataaaagg 569



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>emb|AL626786.11| Mouse DNA sequence from clone RP23-269L6 on chromosome X, complete
            sequence
          Length = 156879

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 53   caggcagcaagaagagacaaacaa 76
            ||||||||||||| ||||||||||
Sbjct: 5449 caggcagcaagaacagacaaacaa 5426


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,774,644
Number of Sequences: 3902068
Number of extensions: 3774644
Number of successful extensions: 67290
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67262
Number of HSP's gapped (non-prelim): 28
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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