ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast15b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GALM_MOUSE (Q8K157) Aldose 1-epimerase (EC 5.1.3.3) (Galactose m... 32 0.59
2GALM_RAT (Q66HG4) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mut... 30 1.3
3GALM_PONPY (Q5R8U1) Aldose 1-epimerase (EC 5.1.3.3) (Galactose m... 30 1.7
4GALM_HUMAN (Q96C23) Aldose 1-epimerase (EC 5.1.3.3) (Galactose m... 30 1.7
5GALM_BOVIN (Q5EA79) Aldose 1-epimerase (EC 5.1.3.3) (Galactose m... 29 2.9
6GALM_ACICA (P05149) Aldose 1-epimerase precursor (EC 5.1.3.3) (M... 28 8.5
7GALM_PIG (Q9GKX6) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mut... 28 8.5
8CDH_HELPJ (Q9ZKX9) CDP-diacylglycerol pyrophosphatase (EC 3.6.1.... 28 8.5

>GALM_MOUSE (Q8K157) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)|
          Length = 342

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 217 DHPNFPSSIVRPGQVYKHDMVFRFS 143
           + P FP +++RPG+ Y H   F+FS
Sbjct: 316 NQPQFPPALLRPGEEYNHTTWFKFS 340



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>GALM_RAT (Q66HG4) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)|
          Length = 342

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 217 DHPNFPSSIVRPGQVYKHDMVFRFS 143
           + P FP  ++RPG+ Y H   F+FS
Sbjct: 316 NQPQFPPILLRPGEEYNHTTWFKFS 340



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>GALM_PONPY (Q5R8U1) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)|
          Length = 342

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 217 DHPNFPSSIVRPGQVYKHDMVFRFS 143
           + P FP  ++RPG+ Y H   F+FS
Sbjct: 316 NQPRFPPVLLRPGEEYDHTTWFKFS 340



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>GALM_HUMAN (Q96C23) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)|
           (BLOCK25 protein)
          Length = 342

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 217 DHPNFPSSIVRPGQVYKHDMVFRFS 143
           + P FP  ++RPG+ Y H   F+FS
Sbjct: 316 NQPRFPPVLLRPGEEYDHTTWFKFS 340



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>GALM_BOVIN (Q5EA79) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)|
          Length = 342

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 217 DHPNFPSSIVRPGQVYKHDMVFRFS 143
           + P+FP  +++PG+ Y H   F+FS
Sbjct: 316 NQPHFPPVLLKPGEEYDHTTWFKFS 340



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>GALM_ACICA (P05149) Aldose 1-epimerase precursor (EC 5.1.3.3) (Mutarotase)|
          Length = 381

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 217 DHPNFPSSIVRPGQVYKHDMVFRFSYQ 137
           + P FPS+ + P Q Y    VF+F  Q
Sbjct: 354 NQPTFPSTRLNPNQTYNSVTVFKFGVQ 380



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>GALM_PIG (Q9GKX6) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)|
          Length = 342

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 217 DHPNFPSSIVRPGQVYKHDMVFRFS 143
           + P+FP  +++PG+ Y H   F FS
Sbjct: 316 NQPHFPPVLLKPGEEYNHTTWFVFS 340



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>CDH_HELPJ (Q9ZKX9) CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)|
           (CDP-diacylglycerol phosphatidylhydrolase)
           (CDP-diglyceride hydrolase)
          Length = 244

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 26  SCPNATFYYTSYQHVTAQSTRKRRMISHYDVLCVVGSLVGKSENH 160
           S PN  F+Y S+Q     S +  + I  Y +   + S  G+S+NH
Sbjct: 89  STPN--FFYLSWQARDFMSKKYGKPIPDYAISLTINSKKGRSQNH 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.128    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,645,345
Number of Sequences: 219361
Number of extensions: 496702
Number of successful extensions: 1360
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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