ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast14g04 |
|---|---|
| Clone Library Name | barley_pub |
>AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 605 Score = 30.8 bits (68), Expect = 0.82 Identities = 19/67 (28%), Positives = 26/67 (38%) Frame = +1 Query: 34 GSWQQGHSATYNAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLSPWHGPLGAQAPLT 213 GSWQ S V G P G G + + + +R +PW G A A Sbjct: 532 GSWQPAQGVRLRTDSGTYPVWSGAVDLPAGVGFEYKYV---KLNRTAPWSGSRAATASPP 588 Query: 214 WVGASGG 234 W+ + GG Sbjct: 589 WMTSGGG 595
>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC| 3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matrix associated actin dependent regulator of chromatin subfamily A member 2) (hBRM) Length = 1586 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +1 Query: 100 GFSPPPVGKGASRRPITAHRPDRLSPWHGPLGAQAPLTWVGASGG 234 G PP G G + P+ H +SP PLGA ++ + GG Sbjct: 98 GMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGG 142
>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 550 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +3 Query: 177 MARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAP 311 + R + G SA + RG+ + SH D DL+ F + A ++ P Sbjct: 423 LTREIFGQSAFDAFRGQEISPGSHVQSDDDLDVFIRDHAESAYHP 467
>RTN4R_MOUSE (Q99PI8) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +2 Query: 2 RIRATWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPL-GRELRGGRSRHIGRTDL 172 R R W W+ RGS + +P +P+R+ K A L G + G R I + L Sbjct: 267 RARPLWAWLQKFRGSSSEVPCNLPQRLADRDLKRLAASDLEGCAVASGPFRPIQTSQL 324
>RTN4R_MACFA (Q9N0E3) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +2 Query: 2 RIRATWGWISVDRGSKATLPLTMPRRV 82 R R W W+ RGS + +P ++P+R+ Sbjct: 267 RARPLWAWLQKFRGSSSEVPCSLPQRL 293
>RTN4R_HUMAN (Q9BZR6) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +2 Query: 2 RIRATWGWISVDRGSKATLPLTMPRRV 82 R R W W+ RGS + +P ++P+R+ Sbjct: 267 RARPLWAWLQKFRGSSSEVPCSLPQRL 293
>PRGR_MOUSE (Q00175) Progesterone receptor (PR)| Length = 923 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = +3 Query: 180 ARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNCVNQR 356 A GG S+ V A +S ++L+ L P GSFAPL +P A +C+ R Sbjct: 432 AAVAGGPSSAAVSP----ASSSGSALECILYKAEAPPTQGSFAPLPCKPPAAASCLLPR 486
>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)| (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) Length = 644 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -3 Query: 280 LNASKSESKLACDACARRSPRPTLGALAPPRAR 182 L + S LACD C+ RS + + LAP R++ Sbjct: 234 LGPGRPRSPLACDDCSLRSAKSSFSLLAPIRSK 266
>RTN4R_RAT (Q99M75) Reticulon-4 receptor precursor (Nogo receptor) (NgR)| (Nogo-66 receptor) Length = 473 Score = 29.3 bits (64), Expect = 2.4 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +2 Query: 2 RIRATWGWISVDRGSKATLPLTMPRRV 82 R R W W+ RGS + +P +P+R+ Sbjct: 267 RARPLWAWLQKFRGSSSEVPCNLPQRL 293
>PTH_NANEQ (P61235) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 115 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 20/26 (76%) Frame = +3 Query: 210 NVGRGERRAQASHASLDSDLEAFSHN 287 ++G+G+ AQ +HASLD+ L+ + +N Sbjct: 12 DIGKGKLCAQVAHASLDAALKVYRNN 37
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = +1 Query: 58 ATYNAPSRI*VVCKGFSPPPVGKGASRRPITAHRPDRLSPWHGPL 192 ++ N PSR+ + S PP + + HRP R W PL Sbjct: 860 SSLNLPSRLPHTWRRLSEPPTRAVKPQVRLPFHRPPRAGAWRAPL 904
>SRBP1_RAT (P56720) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) (Adipocyte determination- and differentiation-dependent factor 1) (ADD1) (Fragment) Length = 1024 Score = 28.9 bits (63), Expect = 3.1 Identities = 28/71 (39%), Positives = 35/71 (49%) Frame = +3 Query: 126 GSFEAADHGTSAGPT*PMARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSF 305 G F+A G G T P + GAS+P + +S ASL S LEAF P + Sbjct: 21 GLFDAPYAGGETGDTGPSSP---GASSPE-------SFSSPASLGSSLEAFLGGP-KVTP 69 Query: 306 APLAFQPSAMT 338 APL+ PSA T Sbjct: 70 APLSPPPSAPT 80
>IL17C_HUMAN (Q9P0M4) Interleukin-17C precursor (IL-17C) (Cytokine CX2)| Length = 197 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/52 (38%), Positives = 24/52 (46%) Frame = +3 Query: 189 LGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNC 344 LG A + RG + QA +L S LEA SH H +PSA T C Sbjct: 44 LGQAPPHLLARGAKWGQALPVALVSSLEAASHRGRHE-------RPSATTQC 88
>PANB_WIGBR (Q8D2A5) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC| 2.1.2.11) (Ketopantoate hydroxymethyltransferase) Length = 265 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -1 Query: 126 LPNGRWAESFADDLNTRRGIVSGRVALLPRSTEIQ 22 L G W +LNTR V G + L P+S +Q Sbjct: 113 LEGGLWVSDIIHELNTRSIPVCGHIGLTPQSINMQ 147
>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (hPER) Length = 1290 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +3 Query: 51 PLCHLQCPVAYLSRLQRIQPTARWEGSFEAADHGTSAGPT*PMARA 188 PL + +C L +++ R EG+ A G+SAGP P A A Sbjct: 972 PLFNSRCSSPLQLNLLQLEELPRAEGAAVAGGPGSSAGPPPPSAEA 1017
>CSKI2_MOUSE (Q8VHK1) Caskin-2| Length = 1201 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/64 (32%), Positives = 23/64 (35%) Frame = -2 Query: 194 PKGPCHGLSRSGRCAVIGRLEAPFPTGGGLNPLQTT*IRDGAL*VAEWPCCHDPLRSSPM 15 PK H LSR G EA P G L T R G +A P R +P Sbjct: 793 PKRRSHSLSRPGPAEGEAEGEAEGPVGSALGSYATLTRRPGRSTLARTSPSLTPTRGTPR 852 Query: 14 SHGF 3 S F Sbjct: 853 SQSF 856
>GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoantigen| golgin-67) (88 kDa Golgi protein) (Gm88 autoantigen) Length = 460 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +3 Query: 192 GGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSA 332 GG G+G +A+ A+ D S+N HG F A P+A Sbjct: 328 GGHHQAGPGQGGEEGEAAGAAGDGVAACGSYNEGHGKFLAAAQNPAA 374
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +3 Query: 81 YLSRLQRIQPTARWEGSFEAADHGTSAGPT*PMARALGGASAPNVGRGERRAQASHASLD 260 YL + IQP + E A+ T+ GPT + S PN+ G +R+++ SL+ Sbjct: 444 YLFQKPDIQPEEQ-EAVGSPAEAATAMGPTVLEGQVYTNTSPPNLNTGRQRSRSYDRSLE 502
>PRGR_RAT (Q63449) Progesterone receptor (PR)| Length = 923 Score = 27.7 bits (60), Expect = 6.9 Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 26/97 (26%) Frame = +3 Query: 144 DHGTSAGPT*PMARALGGASA---------------PNVGRGERRAQASHASLD------ 260 + GT A P L GASA P GE A A++ Sbjct: 390 EEGTEAASRSPRPYLLAGASAATFPDFPLPPRPPRAPPSRPGEAAVAAPSAAVSPVSSSG 449 Query: 261 SDLEAFSHN-----PAHGSFAPLAFQPSAMTNCVNQR 356 S LE + P GSFAPL +P A ++C+ R Sbjct: 450 SALECILYKAEGAPPTQGSFAPLPCKPPAASSCLLPR 486
>FHOD1_HUMAN (Q9Y613) FH1/FH2 domain-containing protein (Formin homolog| overexpressed in spleen) (FHOS) (Formin homology 2 domain-containing protein 1) Length = 1163 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = -3 Query: 223 PRPTLGALAPPRARAMG*VGPADVP*SAASKLPSQRAVG*ILCRRLKYATGH 68 P P G PP + P VP S+A LP++R + R LK A GH Sbjct: 590 PPPIKGPFPPPPPLPLAAPLPHSVPDSSA--LPTKRKTVKLFWRELKLAGGH 639
>CI068_RAT (Q6AYJ3) Protein C9orf68 homolog| Length = 398 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 88 VVCKGFSPPPVGKGASRRPITAHRPD 165 +V + SPPP+ G R+P+ H+ D Sbjct: 287 IVLRSQSPPPLNSGHFRKPLLNHQGD 312
>ABL_MLVAB (P00521) Tyrosine-protein kinase transforming protein Abl (EC| 2.7.10.2) (V-abl) Length = 746 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = +2 Query: 5 IRATWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPLG-RELRGG 142 +RA W W DR S A + +SS D + LG R RGG Sbjct: 358 MRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKRGTRGG 404
>XYLD_RHILO (Q98D10) Putative D-xylulose reductase (EC 1.1.1.9) (Xylitol| dehydrogenase) (XDH) Length = 348 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 252 SLDSDLEAFSHNPAHGSFAPLAFQPSAMT 338 ++D D+ ++ P HG AP A P+A T Sbjct: 105 NVDPDVSFWATPPVHGVLAPYAVHPAAFT 133
>ERYA3_SACER (Q03133) Erythronolide synthase, modules 5 and 6 (EC 2.3.1.94) (ORF| 3) (6-deoxyerythronolide B synthase III) (DEBS 3) Length = 3171 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 26 ISVDRGSKATLPLTMPRRVFKSSAKDSAHRPLGRELRGGRS 148 I++D G + + M RR F + HRPL E+ G R+ Sbjct: 1325 ITLDHGQTSVSVVDMDRRRFVELFTAARHRPLFDEIAGARA 1365
>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/44 (43%), Positives = 21/44 (47%) Frame = +3 Query: 105 QPTARWEGSFEAADHGTSAGPT*PMARALGGASAPNVGRGERRA 236 QPT E GT A ARA GGA++P G G RRA Sbjct: 718 QPTQLVLKLKERPSPGTGASAR--AARAAGGAASPGPGGGARRA 759
>COAT_LSV (P27335) Coat protein (Capsid protein) (CP)| Length = 291 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +3 Query: 48 RPLCHLQCPVAYLSRLQRIQPTARWE 125 R +C L P+ + S L R QP A W+ Sbjct: 180 RKVCRLYAPIVWNSMLVRNQPPADWQ 205
>TRMD_RHIME (Q92L41) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 240 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -2 Query: 362 EEPLIHTIGHRAWLKSQWREATVCRIMTERL*VRIQASMRRLRPPLAP 219 E P + T G+ A + +QWREAT R+ ER ++ + R P P Sbjct: 191 EIPAVLTSGNHAAV-AQWREATARRLTAERRPDLLERARHPKRDPPQP 237
>ABL1_MOUSE (P00520) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.10.2)| (p150) (c-ABL) (Abelson murine leukemia viral oncogene homolog 1) Length = 1123 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = +2 Query: 5 IRATWGWISVDRGSKATLPLTMPRRVFKSSAKDSAHRPLG-RELRGG 142 +RA W W DR S A + +SS D + LG R RGG Sbjct: 472 MRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKRGTRGG 518 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,592,580 Number of Sequences: 219361 Number of extensions: 1223857 Number of successful extensions: 3963 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3792 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3955 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
