| Clone Name | rbast14e09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191211.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1215 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 286 cgatgagcgtgacgaacggttggtgctgccctcattgcgatccttcttccgcaaaccttc 345 |||||| ||||| ||||| |||||||||||||||| ||||| ||||||| || || || Sbjct: 1200 cgatgaacgtgatgaacgagtggtgctgccctcatttcgatctttcttccacatgccctc 1141 Query: 346 gaagctcaggaaacacttcagaggtctgaccttccaacggtttct 390 ||||||||||| || || |||||| | ||||||||||||||||| Sbjct: 1140 aaagctcaggaagcatttgagaggtttcaccttccaacggtttct 1096
>dbj|AK104674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B05, full insert sequence Length = 1743 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 286 cgatgagcgtgacgaacggttggtgctgccctcattgcgatccttcttccgcaaaccttc 345 |||||| ||||| ||||| |||||||||||||||| ||||| ||||||| || || || Sbjct: 1524 cgatgaacgtgatgaacgagtggtgctgccctcatttcgatctttcttccacatgccctc 1465 Query: 346 gaagctcaggaaacacttcagaggtctgaccttccaacggtttct 390 ||||||||||| || || |||||| | ||||||||||||||||| Sbjct: 1464 aaagctcaggaagcatttgagaggtttcaccttccaacggtttct 1420
>dbj|AK071920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072M02, full insert sequence Length = 1752 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 286 cgatgagcgtgacgaacggttggtgctgccctcattgcgatccttcttccgcaaaccttc 345 |||||| ||||| ||||| |||||||||||||||| ||||| ||||||| || || || Sbjct: 1535 cgatgaacgtgatgaacgagtggtgctgccctcatttcgatctttcttccacatgccctc 1476 Query: 346 gaagctcaggaaacacttcagaggtctgaccttccaacggtttct 390 ||||||||||| || || |||||| | ||||||||||||||||| Sbjct: 1475 aaagctcaggaagcatttgagaggtttcaccttccaacggtttct 1431
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 286 cgatgagcgtgacgaacggttggtgctgccctcattgcgatccttcttccgcaaaccttc 345 |||||| ||||| ||||| |||||||||||||||| ||||| ||||||| || || || Sbjct: 31326805 cgatgaacgtgatgaacgagtggtgctgccctcatttcgatctttcttccacatgccctc 31326864 Query: 346 gaagctcaggaaacacttcagaggt 370 ||||||||||| || || |||||| Sbjct: 31326865 aaagctcaggaagcatttgagaggt 31326889
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 286 cgatgagcgtgacgaacggttggtgctgccctcattgcgatccttcttccgcaaaccttc 345 |||||| ||||| ||||| |||||||||||||||| ||||| ||||||| || || || Sbjct: 81088 cgatgaacgtgatgaacgagtggtgctgccctcatttcgatctttcttccacatgccctc 81147 Query: 346 gaagctcaggaaacacttcagaggt 370 ||||||||||| || || |||||| Sbjct: 81148 aaagctcaggaagcatttgagaggt 81172
>gb|AC083949.3| Homo sapiens BAC clone CTD-2096A9 from 2, complete sequence Length = 109296 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 165 catgccattcttctgagagagaa 187 ||||||||||||||||||||||| Sbjct: 78448 catgccattcttctgagagagaa 78426
>gb|AC135116.2| Mus musculus BAC clone RP24-316A1 from chromosome 5, complete sequence Length = 138444 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 atttagacacacaaagataat 207 ||||||||||||||||||||| Sbjct: 26019 atttagacacacaaagataat 25999
>gb|AC126681.4| Mus musculus BAC clone RP24-362M8 from chromosome 5, complete sequence Length = 153715 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 atttagacacacaaagataat 207 ||||||||||||||||||||| Sbjct: 126816 atttagacacacaaagataat 126796
>gb|AC166984.7| Mus musculus chromosome 15, clone RP24-359A11, complete sequence Length = 167492 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gccaaatgaaatcaacaacc 268 |||||||||||||||||||| Sbjct: 113066 gccaaatgaaatcaacaacc 113047
>gb|AC110499.19| Mus musculus chromosome 1, clone RP23-202J6, complete sequence Length = 212282 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ttagcatgccattcttctga 180 |||||||||||||||||||| Sbjct: 49062 ttagcatgccattcttctga 49043
>ref|NM_001031021.1| Gallus gallus transmembrane protein 68 (TMEM68), mRNA Length = 3298 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgatcagcagggaagtaaca 160 |||||||||||||||||||| Sbjct: 1739 tgatcagcagggaagtaaca 1720
>gb|AC157771.8| Mus musculus chromosome 1, clone RP24-287N8, complete sequence Length = 189621 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ttagcatgccattcttctga 180 |||||||||||||||||||| Sbjct: 88744 ttagcatgccattcttctga 88725
>gb|BC022917.1| Mus musculus resistance to inhibitors of cholinesterase 8 homolog (C. elegans), mRNA (cDNA clone MGC:27540 IMAGE:4460521), complete cds Length = 2371 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 1848 catttccacaagtgaagttg 1867
>gb|BC005633.1| Mus musculus resistance to inhibitors of cholinesterase 8 homolog (C. elegans), mRNA (cDNA clone IMAGE:3156151), complete cds Length = 2185 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 1643 catttccacaagtgaagttg 1662
>gb|AC117635.6| Mus musculus chromosome 12, clone RP23-203G2, complete sequence Length = 270063 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 acaaatctgtacatgaattc 98 |||||||||||||||||||| Sbjct: 37513 acaaatctgtacatgaattc 37532
>gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, complete sequence Length = 211926 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 caaaagcaaactataaaaca 72 |||||||||||||||||||| Sbjct: 70748 caaaagcaaactataaaaca 70729
>ref|NM_053194.3| Mus musculus resistance to inhibitors of cholinesterase 8 homolog (C. elegans) (Ric8), mRNA Length = 2967 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 1871 catttccacaagtgaagttg 1890
>emb|Z70688.1|HSN27C5 Human DNA sequence from clone LL22NC03-27C5 on chromosome 22, complete sequence Length = 41375 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 caaaagcaaactataaaaca 72 |||||||||||||||||||| Sbjct: 36165 caaaagcaaactataaaaca 36146
>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128301 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 aagtaacattagcatgccat 172 |||||||||||||||||||| Sbjct: 65253 aagtaacattagcatgccat 65234
>emb|AL132773.14|HSDJ741H3 Human DNA sequence from clone RP4-741H3 on chromosome 20 Contains the 3' end of the ATRN gene for attractin (with dipeptidylpeptidase IV activity) (KIAA0548), ESTs, STSs and GSSs, complete sequence Length = 104907 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 48 atcaccaaaagcaaactataaaacagaa 75 |||||| |||| |||||||||||||||| Sbjct: 46372 atcacccaaagaaaactataaaacagaa 46345
>gb|AC162287.4| Mus musculus chromosome 7, clone RP24-243J4, complete sequence Length = 152934 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 40956 catttccacaagtgaagttg 40975
>emb|AJ720496.1| Gallus gallus mRNA for hypothetical protein, clone 19b17 Length = 3298 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgatcagcagggaagtaaca 160 |||||||||||||||||||| Sbjct: 1739 tgatcagcagggaagtaaca 1720
>gb|AC018921.22| Homo sapiens 12 BAC RP11-956E11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188666 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 agaagagacaaatctgtaca 91 |||||||||||||||||||| Sbjct: 103298 agaagagacaaatctgtaca 103279
>emb|CR753829.1| Human DNA sequence from clone XX-NCIH2171_14G18, complete sequence Length = 111550 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 attcttctgagagagaattt 190 |||||||||||||||||||| Sbjct: 33282 attcttctgagagagaattt 33263
>gb|AC087116.13| Mus Musculus Strain C57BL6/J Chromosome 15~RP23-336B1, complete sequence Length = 218476 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 gccaaatgaaatcaacaacc 268 |||||||||||||||||||| Sbjct: 196877 gccaaatgaaatcaacaacc 196896
>dbj|AK167746.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730005F12 product:Synembryn, full insert sequence Length = 2381 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 1874 catttccacaagtgaagttg 1893
>dbj|AK165536.1| Mus musculus RCB-0559 K-1 . F1 cDNA, RIKEN full-length enriched library, clone:G430001A09 product:Synembryn, full insert sequence Length = 2355 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 1848 catttccacaagtgaagttg 1867
>dbj|AK169367.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:I920192M15 product:Synembryn, full insert sequence Length = 2342 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 1835 catttccacaagtgaagttg 1854
>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete sequence Length = 181415 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 52 ccaaaagcaaactataaaacagaagaga 79 ||||||||||| ||| |||||||||||| Sbjct: 8441 ccaaaagcaaaatatcaaacagaagaga 8468
>dbj|AK080192.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530079A14 product:synembryn, full insert sequence Length = 2034 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 1814 catttccacaagtgaagttg 1833
>dbj|AK031466.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030437B01 product:synembryn, full insert sequence Length = 2914 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 1818 catttccacaagtgaagttg 1837
>gb|AC122297.4| Mus musculus BAC clone RP23-266D1 from chromosome 6, complete sequence Length = 170005 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 agctcaggaaacacttcaga 367 |||||||||||||||||||| Sbjct: 80876 agctcaggaaacacttcaga 80857
>ref|XM_215118.3| PREDICTED: Rattus norvegicus synembryn (Ric8a), mRNA Length = 2389 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 1879 catttccacaagtgaagttg 1898
>gb|AF288813.1|AF288813 Mus musculus synembryn mRNA, complete cds Length = 2377 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 1870 catttccacaagtgaagttg 1889
>gb|AC107815.11| Mus musculus chromosome 7, clone RP23-114A6, complete sequence Length = 228068 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 catttccacaagtgaagttg 40 |||||||||||||||||||| Sbjct: 62237 catttccacaagtgaagttg 62218
>gb|U91327.1|HSU91327 Human chromosome 12p15 BAC clone CIT987SK-99D8 complete sequence Length = 129252 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 agaagagacaaatctgtaca 91 |||||||||||||||||||| Sbjct: 77931 agaagagacaaatctgtaca 77950
>gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 12, complete sequence Length = 207280 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 caaaagcaaactataaaaca 72 |||||||||||||||||||| Sbjct: 172979 caaaagcaaactataaaaca 172960
>dbj|AP001831.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-317J19, complete sequence Length = 185919 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 attcttctgagagagaattt 190 |||||||||||||||||||| Sbjct: 175751 attcttctgagagagaattt 175770
>gb|AC147968.2| Gallus gallus BAC clone CH261-119F24 from chromosome unknown, complete sequence Length = 209917 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 tctgtacatgaattccttga 103 |||||||||||||||||||| Sbjct: 193503 tctgtacatgaattccttga 193484
>dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:13N6, complete sequence Length = 206647 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 48 atcaccaaaagcaaactataaaacagaa 75 |||||| |||| |||||||||||||||| Sbjct: 70989 atcacccaaagaaaactataaaacagaa 70962 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,704,616 Number of Sequences: 3902068 Number of extensions: 3704616 Number of successful extensions: 71566 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71477 Number of HSP's gapped (non-prelim): 89 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)