ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast14d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NUMBL_MOUSE (O08919) Numb-like protein 29 4.3
2FLGH_RHILO (Q98HD3) Flagellar L-ring protein precursor (Basal bo... 28 7.4
3I17RC_MOUSE (Q8K4C2) Interleukin-17 receptor C precursor (IL-17 ... 28 7.4
4FTSW_ENTHR (Q47866) Probable cell division protein ftsW 28 9.7
5NFYAA_ARATH (Q8LFU0) Nuclear transcription factor Y subunit A-10... 28 9.7
6ARV1_HUMAN (Q9H2C2) Protein ARV1 (hARV1) 28 9.7

>NUMBL_MOUSE (O08919) Numb-like protein|
          Length = 604

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 209 QRQWVVI*DPPTSAPSTQPFMDPFGPF 289
           Q+Q   +   PT AP+ QPF  P GPF
Sbjct: 439 QQQATSVPPMPTMAPTLQPFSAPVGPF 465



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>FLGH_RHILO (Q98HD3) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 235

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 145 LDNDNTKGQGHVQVQQHSKENTETVGGHMRSADVGAEHT 261
           L N N    G  +V+ +++    T+ G +R AD+GAE+T
Sbjct: 159 LPNGNLMITGSQEVRVNAELRVLTIAGIVRPADIGAENT 197



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>I17RC_MOUSE (Q8K4C2) Interleukin-17 receptor C precursor (IL-17 receptor C)|
           (IL-17RC) (Interleukin-17 receptor-like protein)
           (IL-17RL)
          Length = 674

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 378 DPQDGVRLIRDLSCEVWCFFVLCVP 304
           +PQD  R    LSC +W   VLC+P
Sbjct: 26  EPQDTARCSLGLSCHLWDGDVLCLP 50



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>FTSW_ENTHR (Q47866) Probable cell division protein ftsW|
          Length = 397

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -1

Query: 201 LAVLLYLYVPLTFGVVIVEWQERLAIFYNPRIV 103
           L +  +L++ L++GV+++ +  RL +   PRI+
Sbjct: 44  LFIRQFLFIILSWGVIVLTYSIRLQVLLKPRII 76



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>NFYAA_ARATH (Q8LFU0) Nuclear transcription factor Y subunit A-10 (AtNF-YA-10)|
          Length = 269

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +1

Query: 169 QGHVQVQQHSKENTETVGGHMRSADVGAEHTAFHGSLRSISCRFPRDTQYKKTPHL 336
           QG V  Q  +   T + GG   S DV   H AF          F +   Y K PH+
Sbjct: 48  QGVVDKQTSTTLFTFSPGGEKSSRDVPKPHVAFAMQSACFEFGFAQPMMYTKHPHV 103



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>ARV1_HUMAN (Q9H2C2) Protein ARV1 (hARV1)|
          Length = 271

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 42  PTFFLCLCRHRNISCAEEKKKLFEDY 119
           PT     C++R I C +E K+L+ DY
Sbjct: 23  PTAASASCQYRCIECNQEAKELYRDY 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,013,854
Number of Sequences: 219361
Number of extensions: 1336949
Number of successful extensions: 3350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3350
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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