ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast14c05 |
|---|---|
| Clone Library Name | barley_pub |
>ULE1A_MOUSE (Q9R1T2) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating| enzyme subunit 1) Length = 350 Score = 42.4 bits (98), Expect = 3e-04 Identities = 17/38 (44%), Positives = 26/38 (68%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAADGKGVMEDIPP 257 GIL QE++K++S + P NFF+FD G G++E + P Sbjct: 312 GILAQEIVKALSQRDPPHNNFFFFDGMKGSGIVECLGP 349
>ULE1A_HUMAN (Q9UBE0) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating| enzyme subunit 1) Length = 346 Score = 42.4 bits (98), Expect = 3e-04 Identities = 17/38 (44%), Positives = 26/38 (68%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAADGKGVMEDIPP 257 GIL QE++K++S + P NFF+FD G G++E + P Sbjct: 308 GILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVECLGP 345
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/42 (42%), Positives = 27/42 (64%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAADGKGVMEDIPPTPED 245 GI+GQEV+K+ S K +P+ FFYFD+ + + P P+D Sbjct: 402 GIVGQEVVKACSGKFHPLNQFFYFDSVES---LPTYPLEPQD 440
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 37.0 bits (84), Expect = 0.012 Identities = 15/28 (53%), Positives = 22/28 (78%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAAD 287 GI+GQEV+K+ S K +P+ FFYFD+ + Sbjct: 399 GIVGQEVVKACSGKFHPLYQFFYFDSVE 426
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 37.0 bits (84), Expect = 0.012 Identities = 15/28 (53%), Positives = 22/28 (78%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAAD 287 GI+GQEV+K+ S K +P+ FFYFD+ + Sbjct: 399 GIVGQEVVKACSGKFHPLYQFFYFDSVE 426
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 33.1 bits (74), Expect = 0.17 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAAD 287 G++ QEV+K+ S K P+K F YFD+ + Sbjct: 368 GLVAQEVLKACSGKFTPLKQFMYFDSLE 395
>RAD31_SCHPO (P79064) DNA damage tolerance protein rad31| Length = 307 Score = 32.0 bits (71), Expect = 0.38 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAADG 284 G++ Q+ + SIS K PI NF+ FDA G Sbjct: 272 GVVSQDALNSISKKQFPIDNFWIFDAESG 300
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 32.0 bits (71), Expect = 0.38 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAAD 287 G + QEV+K+ + K P+K +FYFD+ + Sbjct: 363 GAVAQEVLKATTSKFYPLKQYFYFDSLE 390
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAAD 287 G+ QEV+K+ S K PI + YFDA + Sbjct: 403 GLAAQEVMKACSGKFMPIMQWLYFDALE 430
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAAD 287 G+ QEV+K+ S K PI + YFDA + Sbjct: 403 GLAAQEVMKACSGKFMPIMQWLYFDALE 430
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -2 Query: 370 GILGQEVIKSISCKGNPIKNFFYFDAAD 287 G+ QEV+K+ S K PI + YFDA + Sbjct: 403 GLAAQEVMKACSGKFMPIMQWLYFDALE 430
>SILP_SALTY (Q9ZHC7) Putative cation-transporting P-type ATPase (EC 3.6.3.-)| Length = 824 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 364 LGQEVIKSISCKGNPIKNFFYFDAADGKGVMEDI 263 LG V+K+ KG I +F+A GKGV D+ Sbjct: 552 LGMAVVKAAQEKGIAIPAVTHFNAPSGKGVSGDV 585
>PPS3_BACSU (P39847) Peptide synthetase 3| Length = 2555 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 334 CKGNPIKNFFYFDAADGKGVMEDIPP 257 C G IK+F + A GKG + D+PP Sbjct: 152 CLGIVIKDFLHIYQALGKGQLPDLPP 177
>MYF5_COTJA (P34061) Myogenic factor 5 (Myf-5) (Myogenic factor 3) (Fragment)| Length = 246 Score = 27.3 bits (59), Expect = 9.3 Identities = 30/110 (27%), Positives = 46/110 (41%) Frame = +1 Query: 37 RMSILFNAVLRCHSMMPSLKR*VQQQKR*NAKLSFQPQPPN*SCHMFDSDDWVQLSASHV 216 ++ IL NA+ S+ L+ V+ + +P P+ SC SD + +A V Sbjct: 110 KVEILRNAIRYIESLQELLREQVENYYHLPGQSCSEPTSPSSSC----SDAMGRTAAGPV 165 Query: 217 G*ELGIT*FSLQELGGCPP*PLYHQRRRSKRNS*LDCPYKILT*SPPDQE 366 G S E G CP P + +S S LDC +I+ P +E Sbjct: 166 WPARG----SSFEAGYCPEMPHAYATEQSGALSSLDCLSRIVDRLSPAEE 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,659,751 Number of Sequences: 219361 Number of extensions: 820019 Number of successful extensions: 1508 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1495 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1508 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
