>PRM2_BOVIN (P19782) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 112

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 122 LFGNILRSYRTHSQSHHTRIDHRNNLREPRSKTIKGKLGP--SDILITTQLKFQGAGCR 292
           ++G   R    +    HTR   R   R  R ++ +G  GP  + I  T Q   QG+GCR
Sbjct: 41  VYGRTHRGRYHYRHRSHTRAYRRRRRRACRHRSRRGAAGPPCAPIPGTPQASRQGSGCR 99

>ATL3E_ARATH (Q9LUL6) Putative RING-H2 finger protein ATL3E|
          Length = 204

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 56  IIAIMYSCNPGYSTFFISYWSNLFGNILRSYRTHSQSHHTRIDHRNNLREPRSKTIKGKL 235
           +I I    N  ++ FF    + +   I++ Y TH   H    DH NN     S TIK ++
Sbjct: 7   VILIHLGINIVFAFFFFGISAVVVSCIIKCYNTHDDDH----DHDNNNDGHVSITIKERV 62

Query: 236 G 238
           G
Sbjct: 63  G 63

>RLUA_HAEDU (P59831) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 222

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 132 TSYVRTAHTANHTTPASITEITSGNHARKLSKVSSGHLI 248
           T Y    H AN+TT    T IT  +H  ++  ++ GH I
Sbjct: 140 THYEVLEHLANNTTRVKFTPITGRSHQLRVHSLALGHPI 178

>CCD21_MOUSE (Q8BMK0) Coiled-coil domain-containing protein 21|
          Length = 761

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 298 HAPAPGSLKLQLGGNQNIRW-PELTFDSFRAWFPEVISVIDAG 173
           HA +PGS  +Q G +    W   +  ++FR+ F    S+ D+G
Sbjct: 13  HATSPGSNVIQKGSSLGTEWQTPVISETFRSRFSRCSSIADSG 55

>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region|
          Length = 153

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 139 TFVPHTQPITPHPHRSP 189
           T  PH  P TPHPH +P
Sbjct: 42  TPTPHPHPHTPHPHTTP 58

>BIR1_YEAST (P47134) Protein BIR1|
          Length = 954

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 188 RNNLREPRSKTIKGKLGPSD 247
           R NL+EPRS +I GK+ P++
Sbjct: 630 RKNLQEPRSLSISGKVVPTE 649

>EAF6_YEAST (P47128) Chromatin modification-related protein EAF6|
           (ESA1-associated factor 6)
          Length = 113

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 116 SNLFGNILRSYRTHSQSHHTRIDHRNN 196
           S+  GNI++ + T S+SHH+  D   N
Sbjct: 63  SHYSGNIIKGFDTFSKSHHSHADSAFN 89

>RLUA_PASMU (Q9CK02) Ribosomal large subunit pseudouridine synthase A (EC|
           5.4.99.-) (rRNA-uridine isomerase A) (rRNA
           pseudouridylate synthase A)
          Length = 219

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 129 VTSYVRTAHTANHTTPASITEITSGNHARKLSKVSSGHLI 248
           +T Y   A   N+TT   +T IT  +H  +L  ++ GH I
Sbjct: 136 LTLYEVLARYPNNTTRVKLTPITGRSHQLRLHMLALGHPI 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,896,382
Number of Sequences: 219361
Number of extensions: 945001
Number of successful extensions: 2510
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2509
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)