ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast14b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KAT3_ARATH (P92960) Potassium channel KAT3 (AKT4) (AtKC1) (Potas... 29 5.3
2G6PI_TREPA (O83488) Glucose-6-phosphate isomerase (EC 5.3.1.9) (... 29 6.9
3DOF53_ARATH (Q84TE9) Dof zinc finger protein DOF5.3 (AtDOF5.3) 29 6.9
4ASSY_SULAC (Q4J8F1) Argininosuccinate synthase (EC 6.3.4.5) (Cit... 29 6.9

>KAT3_ARATH (P92960) Potassium channel KAT3 (AKT4) (AtKC1) (Potassium channel|
           TKC)
          Length = 662

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 43  QVQRLI-AKITEQSSIIEHQNTTLSHNRNGRLSQQQRVGEERRVYTHG 183
           QVQ  + ++ T QS+  + +  T+S + NG++ +++R G  +RV  HG
Sbjct: 551 QVQETVQSEETPQSN--DEEIVTVSRHENGQIEERRREGVPKRVIIHG 596



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>G6PI_TREPA (O83488) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 535

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 102 VLVFDDGGLFRDLSNESLYLYILLSVGLEDHTWF 1
           +LV   G     LSNE    ++L   GLE HT F
Sbjct: 211 ILVSKSGTTLETLSNELFVAHVLRQAGLEPHTQF 244



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>DOF53_ARATH (Q84TE9) Dof zinc finger protein DOF5.3 (AtDOF5.3)|
          Length = 257

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 14  SSNPT--DNNMYKYNDSLLRSRNNPPSSNTKTPRCLTTEMAGC 136
           SSNPT  DN+  K + +   +R  PP    + PRC +T    C
Sbjct: 26  SSNPTPLDNDQKKPSPATAVTRPQPPELALRCPRCDSTNTKFC 68



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>ASSY_SULAC (Q4J8F1) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 391

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 140 NSKELGRRGEFTPMVTDLTSYN 205
           N K LGR+G+F+P   ++ SYN
Sbjct: 340 NMKILGRKGKFSPFSEEIASYN 361


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,823,238
Number of Sequences: 219361
Number of extensions: 1082330
Number of successful extensions: 3045
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3039
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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