ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast14b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AB180961.1| Oryza sativa (japonica cultivar-group) OsSCR mRN... 82 2e-12
4dbj|AK073467.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
8emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311... 76 1e-10
9dbj|AB200391.1| Ipomoea nil PnSCR mRNA for SCARECROW, complete cds 64 4e-07
10gb|AC155890.2| Medicago truncatula chromosome 7 BAC clone mth2-4... 52 0.001
11gb|AC002457.2| Homo sapiens BAC clone CTB-60P12 from 7, complete... 50 0.006
12gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, comp... 50 0.006
13gb|AC091320.5| Homo sapiens BAC clone RP11-447A2 from 7, complet... 50 0.006
14ref|XM_387621.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 1.4
15gb|AC091923.3| Homo sapiens chromosome 5 clone RP11-268H4, compl... 42 1.4
16gb|AY145893.1| Danio rerio brain-type fatty acid binding protein... 40 5.4
17gb|AY423488.1| Opistophthalmus carinatus Hsp90 (HSP90) mRNA, com... 40 5.4
18gb|AY653022.1| Tetrahymena thermophila clone Cbs 4L-3 chromosome... 40 5.4
19gb|AC158589.7| Mus musculus chromosome 5, clone RP24-388A6, comp... 40 5.4
20emb|BX664721.26| Zebrafish DNA sequence from clone DKEY-46I9 in ... 40 5.4
21emb|BX571772.8| Zebrafish DNA sequence from clone CH211-238E12 i... 40 5.4
22emb|CR450831.4| Zebrafish DNA sequence from clone CH211-79O8 in ... 40 5.4
23emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 i... 40 5.4
24ref|XM_386455.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 5.4
25gb|AC129192.4| Mus musculus BAC clone RP24-113B19 from chromosom... 40 5.4
26emb|CR457445.15| Zebrafish DNA sequence from clone CH211-204C5 i... 40 5.4
27emb|AL163300.2|HS21C100 Homo sapiens chromosome 21 segment HS21C100 40 5.4
28emb|BX248386.35| Zebrafish DNA sequence from clone CH211-231M12,... 40 5.4
29emb|AL732367.3| Human DNA sequence from clone RP11-81L14 on chro... 40 5.4
30gb|AC137971.4| Mus musculus, clone RP23-135B1, complete sequence 40 5.4
31emb|AL596166.1| Listeria innocua Clip11262 complete genome, segm... 40 5.4
32emb|BX511150.6| Zebrafish DNA sequence from clone CH211-234E22 i... 40 5.4
33emb|BX005370.13| Zebrafish DNA sequence from clone DKEY-21P9 in ... 40 5.4
34emb|BX571819.6| Zebrafish DNA sequence from clone CH211-105H3 in... 40 5.4
35dbj|AB014344.1| Oryza rufipogon endornavirus genomic RNA, comple... 40 5.4
36gb|AC021486.10| Homo sapiens chromosome , clone RP11-73I6, compl... 40 5.4
37gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 5.4
38emb|BX247877.13| Zebrafish DNA sequence from clone DKEY-16J24, c... 40 5.4
39dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
41emb|BX677676.6| Zebrafish DNA sequence from clone DKEYP-12A9 in ... 40 5.4
42gb|AC084638.1|CBRG45I22 Caenorhabditis briggsae cosmid G45I22, c... 40 5.4
43dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
44dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
45dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
46dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
47gb|AC124615.11| Mus musculus chromosome 5, clone RP24-445F15, co... 40 5.4
48emb|BX664613.17| Zebrafish DNA sequence from clone DKEY-5P5 in l... 40 5.4
49emb|BX936328.7| Zebrafish DNA sequence from clone CH211-11F20 in... 40 5.4
50dbj|AP002433.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.4
51dbj|AP003307.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.4
52dbj|AP006293.2| Homo sapiens genomic DNA, chromosome 9 clone:RP1... 40 5.4
53emb|BX088721.5| Zebrafish DNA sequence from clone DKEY-14M2 in l... 40 5.4
54emb|AL954820.11| Zebrafish DNA sequence from clone CH211-6M6, co... 40 5.4
55emb|AL929147.7| Mouse DNA sequence from clone RP23-429P18 on chr... 40 5.4
56emb|AL935281.7| Zebrafish DNA sequence from clone CH211-237G1, c... 40 5.4
57emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on ch... 40 5.4
58gb|AC102030.18| Mus musculus chromosome 5, clone RP23-7J3, compl... 40 5.4
59gb|AC160723.2| Mus musculus BAC clone RP24-499G15 from chromosom... 40 5.4
60dbj|AB020875.1| Homo sapiens genomic DNA of 9q32 anti-oncogene o... 40 5.4
61emb|AL773603.1|HS7B7 Homo sapiens chromosome 21 from BAC clone 7... 40 5.4 
>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0017B18, complete sequence
          Length = 150279

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 334   aagcctgaattgggcgccaagcagatgcagtaagcaagcaaagatccttccatccaagct 393
             ||||||||||||||||||||||||| ||||| || | ||| |||||||||||||||||||
Sbjct: 19653 aagcctgaattgggcgccaagcagaggcagtgagaaggcacagatccttccatccaagct 19594

              
Query: 394   t 394
             |
Sbjct: 19593 t 19593
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                           
Query: 334     aagcctgaattgggcgccaagcagatgcagtaagcaagcaaagatccttccatccaagct 393
               ||||||||||||||||||||||||| ||||| || | ||| |||||||||||||||||||
Sbjct: 1123847 aagcctgaattgggcgccaagcagaggcagtgagaaggcacagatccttccatccaagct 1123788

                
Query: 394     t 394
               |
Sbjct: 1123787 t 1123787
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>dbj|AB180961.1| Oryza sativa (japonica cultivar-group) OsSCR mRNA for SCARECROW,
            complete cds
          Length = 2398

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                        
Query: 334  aagcctgaattgggcgccaagcagatgcagtaagcaagcaaagatccttccatccaagct 393
            ||||||||||||||||||||||||| ||||| || | ||| |||||||||||||||||||
Sbjct: 2128 aagcctgaattgggcgccaagcagaggcagtgagaaggcacagatccttccatccaagct 2069

             
Query: 394  t 394
            |
Sbjct: 2068 t 2068
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>dbj|AK073467.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044H21, full
            insert sequence
          Length = 2921

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                        
Query: 334  aagcctgaattgggcgccaagcagatgcagtaagcaagcaaagatccttccatccaagct 393
            ||||||||||||||||||||||||| ||||| || | ||| |||||||||||||||||||
Sbjct: 2137 aagcctgaattgggcgccaagcagaggcagtgagaaggcacagatccttccatccaagct 2078

             
Query: 394  t 394
            |
Sbjct: 2077 t 2077
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                           
Query: 334     aagcctgaattgggcgccaagcagatgcagtaagcaagcaaagatccttccatccaagct 393
               ||||||||||||||||||||||||| ||||| || | ||| |||||||||||||||||||
Sbjct: 1121568 aagcctgaattgggcgccaagcagaggcagtgagaaggcacagatccttccatccaagct 1121509

                
Query: 394     t 394
               |
Sbjct: 1121508 t 1121508
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                           
Query: 334     aagcctgaattgggcgccaagcagatgcagtaagcaagcaaagatccttccatccaagct 393
               ||||||||||||||||||||||||| ||||| || | ||| |||||||||||||| ||||
Sbjct: 1045798 aagcctgaattgggcgccaagcagaggcagtgagaaggcacagatccttccatccgagct 1045739

                     
Query: 394     tgagag 399
               | ||||
Sbjct: 1045738 tcagag 1045733



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 150     taagttgaacattagtaactatcactgtg 178
               ||||||| ||||||||||||| |||||||
Sbjct: 1045989 taagttgcacattagtaactaccactgtg 1045961
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                           
Query: 334     aagcctgaattgggcgccaagcagatgcagtaagcaagcaaagatccttccatccaagct 393
               ||||||||||||||||||||||||| ||||| || | ||| |||||||||||||| ||||
Sbjct: 1045798 aagcctgaattgggcgccaagcagaggcagtgagaaggcacagatccttccatccgagct 1045739

                     
Query: 394     tgagag 399
               | ||||
Sbjct: 1045738 tcagag 1045733



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 150     taagttgaacattagtaactatcactgtg 178
               ||||||| ||||||||||||| |||||||
Sbjct: 1045989 taagttgcacattagtaactaccactgtg 1045961
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>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 97056

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                         
Query: 334   aagcctgaattgggcgccaagcagatgcagtaagcaagcaaagatccttccatccaagct 393
             ||||||||||||||||||||||||| ||||| || | ||| |||||||||||||| ||||
Sbjct: 41069 aagcctgaattgggcgccaagcagaggcagtgagaaggcacagatccttccatccgagct 41010

                   
Query: 394   tgagag 399
             | ||||
Sbjct: 41009 tcagag 41004



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 150   taagttgaacattagtaactatcactgtg 178
             ||||||| ||||||||||||| |||||||
Sbjct: 41260 taagttgcacattagtaactaccactgtg 41232
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>dbj|AB200391.1| Ipomoea nil PnSCR mRNA for SCARECROW, complete cds
          Length = 2505

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 354  gcagatgcagtaagcaagcaaagatccttccatccaagcttgag 397
            ||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 2360 gcagaagcagtaagcaagcagagatccttccaaccaagcttgag 2317
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>gb|AC155890.2| Medicago truncatula chromosome 7 BAC clone mth2-49p3, complete sequence
          Length = 127058

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 350   ccaagcagatgcagtaagcaagcaaagatccttccatccaag 391
             ||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 18355 ccaagcagaagcagtaagcaaacaaagatctttccaaccaag 18396
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>gb|AC002457.2| Homo sapiens BAC clone CTB-60P12 from 7, complete sequence
          Length = 177380

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 143    ctactattaagttgaacattagtaa 167
              |||||||||||||||||||||||||
Sbjct: 154516 ctactattaagttgaacattagtaa 154492
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>gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, complete sequence
          Length = 155731

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 143   ctactattaagttgaacattagtaa 167
             |||||||||||||||||||||||||
Sbjct: 75820 ctactattaagttgaacattagtaa 75844
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>gb|AC091320.5| Homo sapiens BAC clone RP11-447A2 from 7, complete sequence
          Length = 179728

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 143   ctactattaagttgaacattagtaa 167
             |||||||||||||||||||||||||
Sbjct: 20275 ctactattaagttgaacattagtaa 20251
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>ref|XM_387621.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07445.1)
            partial mRNA
          Length = 3759

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 250  cagctcaagaagcgaaagaag 270
            |||||||||||||||||||||
Sbjct: 3343 cagctcaagaagcgaaagaag 3363
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>gb|AC091923.3| Homo sapiens chromosome 5 clone RP11-268H4, complete sequence
          Length = 78413

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   ctttccttttttccttgtctt 231
             |||||||||||||||||||||
Sbjct: 71983 ctttccttttttccttgtctt 71963
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>gb|AY145893.1| Danio rerio brain-type fatty acid binding protein (FABP7) gene,
           complete cds
          Length = 3619

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 attaagttgaacattagtaa 167
           ||||||||||||||||||||
Sbjct: 418 attaagttgaacattagtaa 437
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>gb|AY423488.1| Opistophthalmus carinatus Hsp90 (HSP90) mRNA, complete cds
          Length = 2310

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 382 tccatccaagcttgagagtg 401
           ||||||||||||||||||||
Sbjct: 234 tccatccaagcttgagagtg 253
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>gb|AY653022.1| Tetrahymena thermophila clone Cbs 4L-3 chromosome breakage
           sequence; micronuclear
          Length = 819

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 10  aaatatttgatttgcttgat 29
           ||||||||||||||||||||
Sbjct: 533 aaatatttgatttgcttgat 514
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>gb|AC158589.7| Mus musculus chromosome 5, clone RP24-388A6, complete sequence
          Length = 173087

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    aagaagacagttgcaccaag 287
              ||||||||||||||||||||
Sbjct: 158498 aagaagacagttgcaccaag 158517
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>emb|BX664721.26| Zebrafish DNA sequence from clone DKEY-46I9 in linkage group 7,
             complete sequence
          Length = 130851

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 34859 attaagttgaacattagtaa 34878
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>emb|BX571772.8| Zebrafish DNA sequence from clone CH211-238E12 in linkage group 5,
             complete sequence
          Length = 125812

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   aagaagcgaaagaagaagac 275
             ||||||||||||||||||||
Sbjct: 92840 aagaagcgaaagaagaagac 92821
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>emb|CR450831.4| Zebrafish DNA sequence from clone CH211-79O8 in linkage group 11,
              complete sequence
          Length = 190163

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    attaagttgaacattagtaa 167
              ||||||||||||||||||||
Sbjct: 128400 attaagttgaacattagtaa 128381
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>emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 in linkage group 9,
              complete sequence
          Length = 218171

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    attaagttgaacattagtaa 167
              ||||||||||||||||||||
Sbjct: 215233 attaagttgaacattagtaa 215252
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>ref|XM_386455.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06279.1)
            partial mRNA
          Length = 1941

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  agcagctcaagaagcgaaag 267
            ||||||||||||||||||||
Sbjct: 1898 agcagctcaagaagcgaaag 1917
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>gb|AC129192.4| Mus musculus BAC clone RP24-113B19 from chromosome 5, complete sequence
          Length = 170410

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    agtgatcagaatgctttcct 217
              ||||||||||||||||||||
Sbjct: 108203 agtgatcagaatgctttcct 108222
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>emb|CR457445.15| Zebrafish DNA sequence from clone CH211-204C5 in linkage group 8,
             complete sequence
          Length = 155181

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 44174 attaagttgaacattagtaa 44193
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>emb|AL163300.2|HS21C100 Homo sapiens chromosome 21 segment HS21C100
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    tttccttttttccttgtctt 231
              ||||||||||||||||||||
Sbjct: 220950 tttccttttttccttgtctt 220931
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>emb|BX248386.35| Zebrafish DNA sequence from clone CH211-231M12, complete sequence
          Length = 148681

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 96983 attaagttgaacattagtaa 96964
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>emb|AL732367.3| Human DNA sequence from clone RP11-81L14 on chromosome 9, complete
             sequence
          Length = 120978

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   ctttccttttttccttgtct 230
             ||||||||||||||||||||
Sbjct: 34802 ctttccttttttccttgtct 34783
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>gb|AC137971.4| Mus musculus, clone RP23-135B1, complete sequence
          Length = 224801

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    agtgatcagaatgctttcct 217
              ||||||||||||||||||||
Sbjct: 138464 agtgatcagaatgctttcct 138483
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>emb|AL596166.1| Listeria innocua Clip11262 complete genome, segment 4/12
          Length = 260050

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   gtaaaatatagtgatgcttt 306
             ||||||||||||||||||||
Sbjct: 72544 gtaaaatatagtgatgcttt 72525
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>emb|BX511150.6| Zebrafish DNA sequence from clone CH211-234E22 in linkage group 14,
             complete sequence
          Length = 38668

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 29830 attaagttgaacattagtaa 29849
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>emb|BX005370.13| Zebrafish DNA sequence from clone DKEY-21P9 in linkage group 10,
             complete sequence
          Length = 208765

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 93537 attaagttgaacattagtaa 93518
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>emb|BX571819.6| Zebrafish DNA sequence from clone CH211-105H3 in linkage group 24,
             complete sequence
          Length = 118635

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 56854 attaagttgaacattagtaa 56835
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>dbj|AB014344.1| Oryza rufipogon endornavirus genomic RNA, complete genome
          Length = 13936

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   ctgctactattaagttgaac 159
             ||||||||||||||||||||
Sbjct: 11552 ctgctactattaagttgaac 11533
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>gb|AC021486.10| Homo sapiens chromosome , clone RP11-73I6, complete sequence
          Length = 144356

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   aatgctttccttttttcctt 226
             ||||||||||||||||||||
Sbjct: 69887 aatgctttccttttttcctt 69906
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     gaaaagggagaaggtaaact 96
              ||||||||||||||||||||
Sbjct: 541347 gaaaagggagaaggtaaact 541328
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>emb|BX247877.13| Zebrafish DNA sequence from clone DKEY-16J24, complete sequence
          Length = 189537

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 92089 attaagttgaacattagtaa 92070
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 337     cctgaattgggcgccaagca 356
               ||||||||||||||||||||
Sbjct: 5922533 cctgaattgggcgccaagca 5922514
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     tttccttttttccttgtctt 231
               ||||||||||||||||||||
Sbjct: 4281932 tttccttttttccttgtctt 4281913
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>emb|BX677676.6| Zebrafish DNA sequence from clone DKEYP-12A9 in linkage group 2,
             complete sequence
          Length = 169301

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 75489 attaagttgaacattagtaa 75508
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>gb|AC084638.1|CBRG45I22 Caenorhabditis briggsae cosmid G45I22, complete sequence
          Length = 44370

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    atctgatatcaacaaggatc 62
             ||||||||||||||||||||
Sbjct: 18129 atctgatatcaacaaggatc 18148
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>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1174_D05
          Length = 128525

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    tttccttttttccttgtctt 231
              ||||||||||||||||||||
Sbjct: 119899 tttccttttttccttgtctt 119880
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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0666G04
          Length = 141983

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tttccttttttccttgtctt 231
             ||||||||||||||||||||
Sbjct: 61702 tttccttttttccttgtctt 61683
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>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0024N18
          Length = 128739

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   cctgaattgggcgccaagca 356
             ||||||||||||||||||||
Sbjct: 44185 cctgaattgggcgccaagca 44166
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>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0537F07
          Length = 147724

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    cctgaattgggcgccaagca 356
              ||||||||||||||||||||
Sbjct: 123308 cctgaattgggcgccaagca 123289
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>gb|AC124615.11| Mus musculus chromosome 5, clone RP24-445F15, complete sequence
          Length = 128560

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  gcagtaagcaagcaaagatc 379
            ||||||||||||||||||||
Sbjct: 5420 gcagtaagcaagcaaagatc 5439
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>emb|BX664613.17| Zebrafish DNA sequence from clone DKEY-5P5 in linkage group 22,
             complete sequence
          Length = 121435

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 85464 attaagttgaacattagtaa 85445
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>emb|BX936328.7| Zebrafish DNA sequence from clone CH211-11F20 in linkage group 18,
             complete sequence
          Length = 113038

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 38162 attaagttgaacattagtaa 38143
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>dbj|AP002433.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-144G7, complete
             sequence
          Length = 165164

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 214   tccttttttccttgtcttaggatc 237
             |||||||| |||||||||||||||
Sbjct: 20590 tcctttttaccttgtcttaggatc 20613
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>dbj|AP003307.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-95J9, complete
              sequence
          Length = 168559

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 214    tccttttttccttgtcttaggatc 237
              |||||||| |||||||||||||||
Sbjct: 105799 tcctttttaccttgtcttaggatc 105822
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>dbj|AP006293.2| Homo sapiens genomic DNA, chromosome 9 clone:RP11-818I20, complete
              sequence
          Length = 155000

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    ctttccttttttccttgtct 230
              ||||||||||||||||||||
Sbjct: 143981 ctttccttttttccttgtct 143962
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>emb|BX088721.5| Zebrafish DNA sequence from clone DKEY-14M2 in linkage group 14,
             complete sequence
          Length = 231054

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 17627 attaagttgaacattagtaa 17608
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>emb|AL954820.11| Zebrafish DNA sequence from clone CH211-6M6, complete sequence
          Length = 188661

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 50642 attaagttgaacattagtaa 50623
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>emb|AL929147.7| Mouse DNA sequence from clone RP23-429P18 on chromosome 2, complete
             sequence
          Length = 155602

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   gctactattaagttgaacat 161
             ||||||||||||||||||||
Sbjct: 53866 gctactattaagttgaacat 53847
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>emb|AL935281.7| Zebrafish DNA sequence from clone CH211-237G1, complete sequence
          Length = 149939

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   attaagttgaacattagtaa 167
             ||||||||||||||||||||
Sbjct: 31996 attaagttgaacattagtaa 31977
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>emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on chromosome 2, complete
             sequence
          Length = 201671

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tcagaatgctttcctttttt 222
             ||||||||||||||||||||
Sbjct: 65069 tcagaatgctttcctttttt 65050
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>gb|AC102030.18| Mus musculus chromosome 5, clone RP23-7J3, complete sequence
          Length = 150101

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   aagaagacagttgcaccaag 287
             ||||||||||||||||||||
Sbjct: 75208 aagaagacagttgcaccaag 75227
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>gb|AC160723.2| Mus musculus BAC clone RP24-499G15 from chromosome 5, complete
            sequence
          Length = 173212

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 360  gcagtaagcaagcaaagatc 379
            ||||||||||||||||||||
Sbjct: 8119 gcagtaagcaagcaaagatc 8100
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>dbj|AB020875.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 7/10
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   ctttccttttttccttgtct 230
             ||||||||||||||||||||
Sbjct: 48963 ctttccttttttccttgtct 48944
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>emb|AL773603.1|HS7B7 Homo sapiens chromosome 21 from BAC clone 7B7, map 21q22.3
          Length = 94746

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tttccttttttccttgtctt 231
             ||||||||||||||||||||
Sbjct: 40347 tttccttttttccttgtctt 40328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,640,453
Number of Sequences: 3902068
Number of extensions: 4640453
Number of successful extensions: 95992
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95608
Number of HSP's gapped (non-prelim): 384
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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