>ZC3H3_MOUSE (Q8CHP0) Zinc finger CCCH-type domain-containing protein 3|
          Length = 950

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 347 AVDPAGHLQQLPRRKQAPQGHPAPVAVRQPHRGALGRHTEPSACL 213
           A     HL Q  RR+QA +G  +PV  + PH+G +  +     CL
Sbjct: 464 ATTSKNHLTQ--RRRQALRGKNSPVLRKTPHKGLMQVNRHRLCCL 506

>SYI_DESPS (Q6AK45) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 939

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 6   TWSSSWSCKLLYSLTLGFYQW*LAKTRNWKYHAIVLVC 119
           +W+ SW    ++S+      W L++ R W     V+ C
Sbjct: 438 SWTPSWGMNRIHSMVESRPDWCLSRQRTWGVPLTVISC 475

>UTY_PANTR (Q6B4Z3) Ubiquitously transcribed Y chromosome tetratricopeptide|
           repeat protein (Ubiquitously transcribed TPR protein on
           the Y chromosome)
          Length = 1079

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 41  QSDTRV-LPVVTS*NSKLEVPRYSISVCPST 130
           QS T+V LP+V+  ++   +P  S+S+CPS+
Sbjct: 810 QSSTKVDLPLVSHRSTSQIIPSMSVSICPSS 840

>AROF_ARATH (P29976) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast|
           precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate
           aldolase 1) (DAHP synthetase 1)
           (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1)
          Length = 525

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 126 RRRLIAVQGAQLLPSWLCHVYSRLER*SGQTCAWLCVPS*SSTMRLPNG 272
           R  +I   GA+ +   L H+   + R SGQ   W+C P   +T++ P G
Sbjct: 385 RITVIVRMGAENMRVKLPHLIRAVRR-SGQIVTWVCDPMHGNTIKAPCG 432

>Y131_MYCPN (P75267) Very hypothetical adhesin P1-like protein MPN131|
           (E07_orf221V)
          Length = 221

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 268 TATGAGCPCGACFRRGSCW 324
           T +G  C C AC+    CW
Sbjct: 180 TPSGCSCSCAACWAASRCW 198

>HEM3_XYLFT (Q87CC9) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 305

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 20/38 (52%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 72  LAKTRNWKYHAIVLVCAPRRRLIAVQ--GAQLL-PSWL 176
           LAK  N  Y AIVL CA  RRL   Q   A+L  P WL
Sbjct: 154 LAKLDNGDYDAIVLACAGLRRLGLEQRMTARLAPPEWL 191

>HEM3_XYLFA (Q9PCX7) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 305

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 20/38 (52%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 72  LAKTRNWKYHAIVLVCAPRRRLIAVQ--GAQLL-PSWL 176
           LAK  N  Y AIVL CA  RRL   Q   A+L  P WL
Sbjct: 154 LAKLDNGDYDAIVLACAGLRRLGLEQRMTARLAPPEWL 191

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 338  PAGHLQQLPRRKQAPQG-HPAPVAVRQPHRGALGRHTEP 225
            P GH +  P   QAPQG  P P    +P R   G  ++P
Sbjct: 1493 PGGHPRHKPGPPQAPQGPSPRPPTRYEPQRVNSGLSSDP 1531

>SYI_SYMTH (Q67Q27) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 938

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 9   WSSSWSCKLLYSLTLGFYQW*LAKTRNWKYHAIVLVCA 122
           W   W    +Y++  G   W +++ R W     +L C+
Sbjct: 435 WIPDWGYNRMYAMIDGLADWCISRQRAWGLPIPILTCS 472


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,004,961
Number of Sequences: 219361
Number of extensions: 788836
Number of successful extensions: 1894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1894
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)