ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast14a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ617794.1| Secale cereale mRNA for ocs-element binding fact... 323 3e-85
2gb|AF479057.1| Triticum aestivum ocs-element binding factor 1 mR... 260 3e-66
3dbj|AB185280.1| Oryza sativa (japonica cultivar-group) OsOBF1 mR... 109 7e-21
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 109 7e-21
6emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 109 7e-21
7gb|BT018824.1| Zea mays clone EL01N0532F03.d mRNA sequence 78 3e-11
8gb|AY103652.1| Zea mays PCO086174 mRNA sequence 78 3e-11
9emb|X62745.1|ZMOCSBFA Z.mays OBF1 mRNA for ocs-element binding f... 72 2e-09
10emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa... 54 4e-04
11gb|AY108024.1| Zea mays PCO086173 mRNA sequence 52 0.001
12gb|AC093363.12| Mus musculus chromosome 7, clone RP23-60O3, comp... 44 0.35
13gb|AC174642.2| Mus musculus BAC clone RP24-362N12 from chromosom... 44 0.35
14emb|AL353693.19| Human DNA sequence from clone RP11-470P21 on ch... 42 1.4
15emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 42 1.4
16gb|AC171178.2| Gallus gallus BAC clone CH261-77I20 from chromoso... 42 1.4
17gb|M82807.1|STMDNA Streptomyces lividans DNA fragment 42 1.4
18gb|AC153508.2| Mus musculus 10 BAC RP23-233B6 (Roswell Park Canc... 40 5.5
19ref|NM_194322.1| Homo sapiens otoferlin (OTOF), transcript varia... 40 5.5
20ref|NM_194323.1| Homo sapiens otoferlin (OTOF), transcript varia... 40 5.5
21ref|NM_004802.2| Homo sapiens otoferlin (OTOF), transcript varia... 40 5.5
22gb|AF172282.1| Oryza sativa adh1-adh2 region 40 5.5
23ref|NM_194248.1| Homo sapiens otoferlin (OTOF), transcript varia... 40 5.5
24ref|XM_416405.1| PREDICTED: Gallus gallus similar to Epidermal g... 40 5.5
25gb|BC049635.1| Mus musculus cDNA sequence BC049635, mRNA (cDNA c... 40 5.5
26gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 5.5
27gb|AC113014.9| Mus musculus chromosome 10, clone RP23-174O18, co... 40 5.5
28ref|XM_972653.1| PREDICTED: Mus musculus cDNA sequence BC049635,... 40 5.5
29ref|XM_972609.1| PREDICTED: Mus musculus cDNA sequence BC049635,... 40 5.5
30ref|XM_972706.1| PREDICTED: Mus musculus cDNA sequence BC049635,... 40 5.5
31gb|AC110815.6| Mus musculus BAC clone RP23-2I10 from chromosome ... 40 5.5
32gb|AC129295.4| Mus musculus BAC clone RP24-560M23 from chromosom... 40 5.5
33ref|XM_808983.1| Trypanosoma cruzi strain CL Brener dispersed ge... 40 5.5
34ref|XM_814972.1| Trypanosoma cruzi strain CL Brener dispersed ge... 40 5.5
35gb|AC115298.6| Mus musculus BAC clone RP23-224G24 from X, comple... 40 5.5
36gb|U00051.1| Caenorhabditis elegans cosmid F42G9, complete sequence 40 5.5
37gb|AC123522.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
38gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
39emb|AL139036.12| Human DNA sequence from clone RP11-285H24 on ch... 40 5.5
40emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.5
41emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 40 5.5
42emb|BX640413.1| Bordetella pertussis strain Tohama I, complete g... 40 5.5
43dbj|AK141954.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 5.5
44dbj|AK133100.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.5
45ref|NM_001024343.1| Rattus norvegicus similar to hypothetical pr... 40 5.5
46emb|BX931875.2| Gallus gallus finished cDNA, clone ChEST798a16 40 5.5
47dbj|AK052361.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 5.5
48dbj|AK077002.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.5
49ref|NM_064855.1| Caenorhabditis elegans F42G9.8 (F42G9.8) mRNA, ... 40 5.5
50gb|BC082005.1| Rattus norvegicus similar to hypothetical protein... 40 5.5
51dbj|AK086413.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 5.5
52dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
53gb|AC157660.2| Mus musculus BAC clone RP23-263I16 from chromosom... 40 5.5
54gb|AC093378.5| Homo sapiens BAC clone RP11-296O15 from 2, comple... 40 5.5
55gb|AF183187.1|AF183187 Homo sapiens heart/fetal otoferlin (OTOF)... 40 5.5
56gb|AF183186.1|AF183186 Homo sapiens brain otoferlin short isofor... 40 5.5
57gb|AF183185.1|AF183185 Homo sapiens brain otoferlin long isoform... 40 5.5
58gb|AC013262.7| Homo sapiens BAC clone RP11-89C12 from 2, complet... 40 5.5
59emb|CR377228.6| Zebrafish DNA sequence from clone DKEY-94P9 in l... 40 5.5
60gb|BC034531.1| Mus musculus aldehyde dehydrogenase 1 family, mem... 40 5.5
61gb|AF107403.1|AF107403 Homo sapiens otoferlin (OTOF) mRNA, compl... 40 5.5
62gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
63gb|AC135015.3| Mus musculus BAC clone RP24-227L14 from 8, comple... 40 5.5
64ref|NM_177785.2| Mus musculus cDNA sequence BC049635 (BC049635),... 40 5.5
65gb|AC126930.4| Mus musculus BAC clone RP24-547J4 from 8, complet... 40 5.5
66ref|NM_153543.1| Mus musculus aldehyde dehydrogenase 1 family, m... 40 5.5
67emb|CT030126.6| Mouse DNA sequence from clone RP23-430F12 on chr... 40 5.5
68dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 5.5
69emb|AL929015.3| Mouse DNA sequence from clone RP23-412F11 on chr... 40 5.5
70emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chro... 40 5.5 
>emb|AJ617794.1| Secale cereale mRNA for ocs-element binding factor 1 (obf1 gene)
          Length = 827

 Score =  323 bits (163), Expect = 3e-85
 Identities = 196/206 (95%), Gaps = 2/206 (0%)
 Strand = Plus / Minus

                                                                       
Query: 203 ttcttcctcttgccagccacagctcagctcctacaggggggatcttgaattattgaccca 262
           |||||||||||||||||||||||||||||||||||||||  ||| | |||||||||||||
Sbjct: 659 ttcttcctcttgccagccacagctcagctcctacagggg--atcctcaattattgaccca 602

                                                                       
Query: 263 atcatgactggatggatcagtactggagcatgtgcgtggcggtggcggcgatgggcatgg 322
           ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atcatcactggagggatcagtactggagcatgtgcgtggcggtggcggcgatgggcatgg 542

                                                                       
Query: 323 cggtggcagggtaggggatctgccacggtcggagcagggggtcgtcgggcgggcactcct 382
           ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 541 cggtggcagggtacgggatctgccacggccggagcagggggtcatcgggcgggcactcct 482

                                     
Query: 383 cctggacgtccatggcgacgccgctg 408
           |||||| |||||||||||||||||||
Sbjct: 481 cctggatgtccatggcgacgccgctg 456



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 63  ggacgacgacagacacttactgaaacataataa 95
           |||||||||| ||||||||||||||||||||||
Sbjct: 758 ggacgacgacggacacttactgaaacataataa 726



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 40/43 (93%), Gaps = 1/43 (2%)
 Strand = Plus / Minus

                                                      
Query: 4   tagaacacaaccatgcacataatta-cccttattactgttaca 45
           |||||||||||||| || ||||||| |||||||||||||||||
Sbjct: 820 tagaacacaaccatacatataattaacccttattactgttaca 778
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>gb|AF479057.1| Triticum aestivum ocs-element binding factor 1 mRNA, partial cds
          Length = 633

 Score =  260 bits (131), Expect = 3e-66
 Identities = 152/159 (95%)
 Strand = Plus / Minus

                                                                       
Query: 250 aattattgacccaatcatgactggatggatcagtactggagcatgtgcgtggcggtggcg 309
           |||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct: 631 aattattgacccaatcatcaccggatcgatcagtactggagcatgtgcgtggcggtggcg 572

                                                                       
Query: 310 gcgatgggcatggcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcg 369
            ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 571 tcgatgggcatggcggtggcagggtacgggatctgccacggccggagcagggggtcgtcg 512

                                                  
Query: 370 ggcgggcactcctcctggacgtccatggcgacgccgctg 408
           ||||||||||||||||||| |||||||||||||||||||
Sbjct: 511 ggcgggcactcctcctggatgtccatggcgacgccgctg 473
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>dbj|AB185280.1| Oryza sativa (japonica cultivar-group) OsOBF1 mRNA for bZIP
           protein, complete cds
          Length = 1277

 Score =  109 bits (55), Expect = 7e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                       
Query: 322 gcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcgggcgggcactcc 381
           |||| ||| ||| ||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct: 950 gcggcggcggggcaggggatctgccatggccggagcagcgggtcgtcgggggggcactcc 891

                                      
Query: 382 tcctggacgtccatggcgacgccgctg 408
           ||||||| |||||||||||||||||||
Sbjct: 890 tcctggatgtccatggcgacgccgctg 864



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 279 tcagtactggagcatgtgcgtggcgg 304
           |||||||||||||||||||| |||||
Sbjct: 969 tcagtactggagcatgtgcgcggcgg 944
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  109 bits (55), Expect = 7e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                            
Query: 322      gcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcgggcgggcactcc 381
                |||| ||| ||| ||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct: 23001976 gcggcggcggggcaggggatctgccatggccggagcagcgggtcgtcgggggggcactcc 23001917

                                           
Query: 382      tcctggacgtccatggcgacgccgctg 408
                ||||||| |||||||||||||||||||
Sbjct: 23001916 tcctggatgtccatggcgacgccgctg 23001890



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 377     actcctcctggacgtccatggcgacgccgct 407
               |||||||||||| ||||||||||||||||||
Sbjct: 8766644 actcctcctggatgtccatggcgacgccgct 8766674



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 279      tcagtactggagcatgtgcgtggcgg 304
                |||||||||||||||||||| |||||
Sbjct: 23001995 tcagtactggagcatgtgcgcggcgg 23001970
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  109 bits (55), Expect = 7e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                            
Query: 322      gcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcgggcgggcactcc 381
                |||| ||| ||| ||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct: 22930167 gcggcggcggggcaggggatctgccatggccggagcagcgggtcgtcgggggggcactcc 22930108

                                           
Query: 382      tcctggacgtccatggcgacgccgctg 408
                ||||||| |||||||||||||||||||
Sbjct: 22930107 tcctggatgtccatggcgacgccgctg 22930081



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 377     actcctcctggacgtccatggcgacgccgct 407
               |||||||||||| ||||||||||||||||||
Sbjct: 8766527 actcctcctggatgtccatggcgacgccgct 8766557



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 279      tcagtactggagcatgtgcgtggcgg 304
                |||||||||||||||||||| |||||
Sbjct: 22930186 tcagtactggagcatgtgcgcggcgg 22930161
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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155568

 Score =  109 bits (55), Expect = 7e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                          
Query: 322    gcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcgggcgggcactcc 381
              |||| ||| ||| ||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct: 111253 gcggcggcggggcaggggatctgccatggccggagcagcgggtcgtcgggggggcactcc 111194

                                         
Query: 382    tcctggacgtccatggcgacgccgctg 408
              ||||||| |||||||||||||||||||
Sbjct: 111193 tcctggatgtccatggcgacgccgctg 111167



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 279    tcagtactggagcatgtgcgtggcgg 304
              |||||||||||||||||||| |||||
Sbjct: 111272 tcagtactggagcatgtgcgcggcgg 111247
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>gb|BT018824.1| Zea mays clone EL01N0532F03.d mRNA sequence
          Length = 1409

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 87/103 (84%)
 Strand = Plus / Minus

                                                                        
Query: 306  ggcggcgatgggcatggcggtggcagggtaggggatctgccacggtcggagcagggggtc 365
            |||| |||||||||||||||  || |||||||| | |||||| || || ||||| |||||
Sbjct: 1023 ggcgccgatgggcatggcggcagccgggtagggcagctgccagggacgcagcagcgggtc 964

                                                       
Query: 366  gtcgggcgggcactcctcctggacgtccatggcgacgccgctg 408
            ||| | |||   ||||||||||| |||||||||||||||||||
Sbjct: 963  gtccgccggcatctcctcctggatgtccatggcgacgccgctg 921
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>gb|AY103652.1| Zea mays PCO086174 mRNA sequence
          Length = 1583

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 87/103 (84%)
 Strand = Plus / Minus

                                                                        
Query: 306  ggcggcgatgggcatggcggtggcagggtaggggatctgccacggtcggagcagggggtc 365
            |||| |||||||||||||||  || |||||||| | |||||| || || ||||| |||||
Sbjct: 1192 ggcgccgatgggcatggcggcagccgggtagggcagctgccagggacgcagcagcgggtc 1133

                                                       
Query: 366  gtcgggcgggcactcctcctggacgtccatggcgacgccgctg 408
            ||| | |||   ||||||||||| |||||||||||||||||||
Sbjct: 1132 gtccgccggcatctcctcctggatgtccatggcgacgccgctg 1090
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>emb|X62745.1|ZMOCSBFA Z.mays OBF1 mRNA for ocs-element binding factor 1
          Length = 1457

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                        
Query: 313  atgggcatggcggtggcagggtaggggatctgccacggtcggagcagggggtcgtcgggc 372
            |||||||||||||  || |||||||| | |||||| || || ||||| |||||||| | |
Sbjct: 1089 atgggcatggcggcagccgggtagggcagctgccagggacgcagcagcgggtcgtccgcc 1030

                                                
Query: 373  gggcactcctcctggacgtccatggcgacgccgctg 408
            ||   ||||||||||| |||||||||||||||||||
Sbjct: 1029 ggcatctcctcctggatgtccatggcgacgccgctg 994
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>emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa0036A15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 195500

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 377   actcctcctggacgtccatggcgacgccgct 407
             |||||||||||| ||||||||||||||||||
Sbjct: 75525 actcctcctggatgtccatggcgacgccgct 75495
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>gb|AY108024.1| Zea mays PCO086173 mRNA sequence
          Length = 469

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 379 tcctcctggacgtccatggcgacgccgctg 408
           |||||||||| |||||||||||||||||||
Sbjct: 206 tcctcctggatgtccatggcgacgccgctg 177
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>gb|AC093363.12| Mus musculus chromosome 7, clone RP23-60O3, complete sequence
          Length = 254081

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 209    ctcttgccagccacagctcagctcct 234
              |||| |||||||||||||||||||||
Sbjct: 223230 ctctggccagccacagctcagctcct 223205
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>gb|AC174642.2| Mus musculus BAC clone RP24-362N12 from chromosome 7, complete sequence
          Length = 144527

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 209   ctcttgccagccacagctcagctcct 234
             |||| |||||||||||||||||||||
Sbjct: 83242 ctctggccagccacagctcagctcct 83267
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>emb|AL353693.19| Human DNA sequence from clone RP11-470P21 on chromosome 9 Contains part
             of the APBA1 gene for myloid beta (A4) precursor
             protein-binding, family A, member 1 (X11) and one CpG
             island, complete sequence
          Length = 63701

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 216   cagccacagctcagctcctac 236
             |||||||||||||||||||||
Sbjct: 11713 cagccacagctcagctcctac 11733
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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 379    tcctcctggacgtccatggcgacgc 403
              ||||||||||||| |||||||||||
Sbjct: 100175 tcctcctggacgtacatggcgacgc 100199
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>gb|AC171178.2| Gallus gallus BAC clone CH261-77I20 from chromosome ul, complete
             sequence
          Length = 237797

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 82    ctgaaacataataataaacacaacatata 110
             |||||||| ||||||||||||||||||||
Sbjct: 48381 ctgaaaca-aataataaacacaacatata 48408
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>gb|M82807.1|STMDNA Streptomyces lividans DNA fragment
          Length = 2026

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 379  tcctcctggacgtccatggcgacgc 403
            ||||||||||||| |||||||||||
Sbjct: 1066 tcctcctggacgtacatggcgacgc 1042
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>gb|AC153508.2| Mus musculus 10 BAC RP23-233B6 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 190780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 190  gctcttcttggttttcttcc 209
            ||||||||||||||||||||
Sbjct: 9881 gctcttcttggttttcttcc 9900
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>ref|NM_194322.1| Homo sapiens otoferlin (OTOF), transcript variant 3, mRNA
          Length = 5124

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 cagccacagctcagctcctacagg 239
           ||||||||||||||||||| ||||
Sbjct: 391 cagccacagctcagctcctccagg 368
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>ref|NM_194323.1| Homo sapiens otoferlin (OTOF), transcript variant 4, mRNA
          Length = 4772

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 cagccacagctcagctcctacagg 239
           ||||||||||||||||||| ||||
Sbjct: 297 cagccacagctcagctcctccagg 274
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>ref|NM_004802.2| Homo sapiens otoferlin (OTOF), transcript variant 2, mRNA
          Length = 4970

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 cagccacagctcagctcctacagg 239
           ||||||||||||||||||| ||||
Sbjct: 297 cagccacagctcagctcctccagg 274
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>gb|AF172282.1| Oryza sativa adh1-adh2 region
          Length = 339485

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 299    tggcggtggcggcgatgggcatgg 322
              ||||||||||||||||||| ||||
Sbjct: 143278 tggcggtggcggcgatggggatgg 143301
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>ref|NM_194248.1| Homo sapiens otoferlin (OTOF), transcript variant 1, mRNA
          Length = 7172

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  cagccacagctcagctcctacagg 239
            ||||||||||||||||||| ||||
Sbjct: 2439 cagccacagctcagctcctccagg 2416
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>ref|XM_416405.1| PREDICTED: Gallus gallus similar to Epidermal growth factor receptor
            kinase substrate EPS8 (LOC418174), mRNA
          Length = 2675

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  ttcttggttttcttcctctt 213
            ||||||||||||||||||||
Sbjct: 1102 ttcttggttttcttcctctt 1083
to top
>gb|BC049635.1| Mus musculus cDNA sequence BC049635, mRNA (cDNA clone MGC:58387
           IMAGE:6774793), complete cds
          Length = 1475

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ttcttggttttcttcctctt 213
           ||||||||||||||||||||
Sbjct: 883 ttcttggttttcttcctctt 864
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    catgtgcgtggcggtggcggcgat 314
              ||||||||||||| ||||||||||
Sbjct: 586335 catgtgcgtggcgatggcggcgat 586358
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>gb|AC113014.9| Mus musculus chromosome 10, clone RP23-174O18, complete sequence
          Length = 187065

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    gctcttcttggttttcttcc 209
              ||||||||||||||||||||
Sbjct: 154014 gctcttcttggttttcttcc 154033
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>ref|XM_972653.1| PREDICTED: Mus musculus cDNA sequence BC049635, transcript variant
           4 (BC049635), mRNA
          Length = 1543

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ttcttggttttcttcctctt 213
           ||||||||||||||||||||
Sbjct: 779 ttcttggttttcttcctctt 760
to top
>ref|XM_972609.1| PREDICTED: Mus musculus cDNA sequence BC049635, transcript variant
           3 (BC049635), mRNA
          Length = 1544

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ttcttggttttcttcctctt 213
           ||||||||||||||||||||
Sbjct: 777 ttcttggttttcttcctctt 758
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>ref|XM_972706.1| PREDICTED: Mus musculus cDNA sequence BC049635, transcript variant
           2 (BC049635), mRNA
          Length = 1640

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ttcttggttttcttcctctt 213
           ||||||||||||||||||||
Sbjct: 873 ttcttggttttcttcctctt 854
to top
>gb|AC110815.6| Mus musculus BAC clone RP23-2I10 from chromosome 12, complete sequence
          Length = 186797

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Plus

                                                
Query: 80    tactgaaacataataataaacacaacatatagcag 114
             |||||||||||||||  ||| ||||||||||||||
Sbjct: 99860 tactgaaacataata--aaaaacaacatatagcag 99892
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>gb|AC129295.4| Mus musculus BAC clone RP24-560M23 from chromosome 1, complete
            sequence
          Length = 121538

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   ataataataaacacaacata 108
            ||||||||||||||||||||
Sbjct: 3295 ataataataaacacaacata 3314
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>ref|XM_808983.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053511665.50) partial mRNA
          Length = 10428

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tgtgcgtggcggtggcggcg 312
            ||||||||||||||||||||
Sbjct: 4944 tgtgcgtggcggtggcggcg 4925
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>ref|XM_814972.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
            (DGF-1) (Tc00.1047053509287.140) partial mRNA
          Length = 10401

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 298  gtggcggtggcggcgatgggcatggcgg 325
            |||||||||||||||||||  |||||||
Sbjct: 4906 gtggcggtggcggcgatggcgatggcgg 4879
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>gb|AC115298.6| Mus musculus BAC clone RP23-224G24 from X, complete sequence
          Length = 184032

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     tattactgttacaaaatagc 52
              ||||||||||||||||||||
Sbjct: 178446 tattactgttacaaaatagc 178427
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>gb|U00051.1| Caenorhabditis elegans cosmid F42G9, complete sequence
          Length = 34008

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   tgaattattgacccaatcat 267
             ||||||||||||||||||||
Sbjct: 16067 tgaattattgacccaatcat 16048
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>gb|AC123522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0051B13, complete sequence
          Length = 178000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 299   tggcggtggcggcgatgggcatgg 322
             ||||||||||||||||||| ||||
Sbjct: 77857 tggcggtggcggcgatggggatgg 77834
to top
>gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0037P04, complete sequence
          Length = 139693

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 299  tggcggtggcggcgatgggcatgg 322
            ||||||||||||||||||| ||||
Sbjct: 5299 tggcggtggcggcgatggggatgg 5276
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>emb|AL139036.12| Human DNA sequence from clone RP11-285H24 on chromosome 13q22.1-22.3
             Contains the 5' end of the KLF12 gene for Kruppel-like
             factor 12, complete sequence
          Length = 109810

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   ttcttggttttcttcctctt 213
             ||||||||||||||||||||
Sbjct: 72449 ttcttggttttcttcctctt 72430
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>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 298    gtggcggtggcggcgatgggcatggcgg 325
              ||||||||||||| |||||||| |||||
Sbjct: 211665 gtggcggtggcggggatgggcacggcgg 211638
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>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 298    gtggcggtggcggcgatgggcatggcgg 325
              ||||||||||||| |||||||| |||||
Sbjct: 148155 gtggcggtggcggggatgggcacggcgg 148128
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>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12
          Length = 349028

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 298    gtggcggtggcggcgatgggcatggcgg 325
              ||||||||||||| |||||||| |||||
Sbjct: 205888 gtggcggtggcggggatgggcacggcgg 205915
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>dbj|AK141954.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130074P12 product:Similar to
            10-formyltetrahydrofolate dehydrogenase, full insert
            sequence
          Length = 5982

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  gctcttcttggttttcttcc 209
            ||||||||||||||||||||
Sbjct: 1657 gctcttcttggttttcttcc 1638
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>dbj|AK133100.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930572P17 product:hypothetical
           Serine-rich region profile containing protein, full
           insert sequence
          Length = 1365

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ttcttggttttcttcctctt 213
           ||||||||||||||||||||
Sbjct: 813 ttcttggttttcttcctctt 794
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>ref|NM_001024343.1| Rattus norvegicus similar to hypothetical protein 4931430D02
           (LOC500445), mRNA
          Length = 1346

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ttcttggttttcttcctctt 213
           ||||||||||||||||||||
Sbjct: 735 ttcttggttttcttcctctt 716
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>emb|BX931875.2| Gallus gallus finished cDNA, clone ChEST798a16
          Length = 762

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ttcttggttttcttcctctt 213
           ||||||||||||||||||||
Sbjct: 758 ttcttggttttcttcctctt 739
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>dbj|AK052361.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:D330038I09 product:similar to
            10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE (EC 1.5.1.6)
            (10-FTHFDH) (FBP-CI) [Rattus norvegicus], full insert
            sequence
          Length = 3939

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  gctcttcttggttttcttcc 209
            ||||||||||||||||||||
Sbjct: 1587 gctcttcttggttttcttcc 1568
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>dbj|AK077002.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4931430D02 product:hypothetical protein,
           full insert sequence
          Length = 1659

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ttcttggttttcttcctctt 213
           ||||||||||||||||||||
Sbjct: 892 ttcttggttttcttcctctt 873
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>ref|NM_064855.1| Caenorhabditis elegans F42G9.8 (F42G9.8) mRNA, complete cds
          Length = 780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 tgaattattgacccaatcat 267
           ||||||||||||||||||||
Sbjct: 114 tgaattattgacccaatcat 95
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>gb|BC082005.1| Rattus norvegicus similar to hypothetical protein 4931430D02, mRNA
           (cDNA clone MGC:94253 IMAGE:7131603), complete cds
          Length = 1346

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ttcttggttttcttcctctt 213
           ||||||||||||||||||||
Sbjct: 735 ttcttggttttcttcctctt 716
to top
>dbj|AK086413.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930026K06 product:weakly similar to
            10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE (EC 1.5.1.6)
            (10-FTHFDH) [Homo sapiens], full insert sequence
          Length = 3512

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  gctcttcttggttttcttcc 209
            ||||||||||||||||||||
Sbjct: 1640 gctcttcttggttttcttcc 1621
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 299     tggcggtggcggcgatgggcatgg 322
               ||||||||||||||||||| ||||
Sbjct: 5532739 tggcggtggcggcgatggggatgg 5532716
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>gb|AC157660.2| Mus musculus BAC clone RP23-263I16 from chromosome 1, complete sequence
          Length = 192026

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    ataataataaacacaacata 108
             ||||||||||||||||||||
Sbjct: 96762 ataataataaacacaacata 96743
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>gb|AC093378.5| Homo sapiens BAC clone RP11-296O15 from 2, complete sequence
          Length = 63849

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 216   cagccacagctcagctcctacagg 239
             ||||||||||||||||||| ||||
Sbjct: 61211 cagccacagctcagctcctccagg 61234
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>gb|AF183187.1|AF183187 Homo sapiens heart/fetal otoferlin (OTOF) mRNA, complete cds
          Length = 4772

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 cagccacagctcagctcctacagg 239
           ||||||||||||||||||| ||||
Sbjct: 297 cagccacagctcagctcctccagg 274
to top
>gb|AF183186.1|AF183186 Homo sapiens brain otoferlin short isoform (OTOF) mRNA, complete
           cds
          Length = 5124

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 cagccacagctcagctcctacagg 239
           ||||||||||||||||||| ||||
Sbjct: 391 cagccacagctcagctcctccagg 368
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>gb|AF183185.1|AF183185 Homo sapiens brain otoferlin long isoform (OTOF) mRNA, complete cds
          Length = 7172

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  cagccacagctcagctcctacagg 239
            ||||||||||||||||||| ||||
Sbjct: 2439 cagccacagctcagctcctccagg 2416
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>gb|AC013262.7| Homo sapiens BAC clone RP11-89C12 from 2, complete sequence
          Length = 146559

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     ataataataaacacaacata 108
              ||||||||||||||||||||
Sbjct: 102509 ataataataaacacaacata 102528
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>emb|CR377228.6| Zebrafish DNA sequence from clone DKEY-94P9 in linkage group 20,
             complete sequence
          Length = 55659

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    acataattacccttattact 39
             ||||||||||||||||||||
Sbjct: 25237 acataattacccttattact 25256
to top
>gb|BC034531.1| Mus musculus aldehyde dehydrogenase 1 family, member L2, mRNA (cDNA
            clone MGC:19039 IMAGE:4188055), complete cds
          Length = 5959

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  gctcttcttggttttcttcc 209
            ||||||||||||||||||||
Sbjct: 1618 gctcttcttggttttcttcc 1599
to top
>gb|AF107403.1|AF107403 Homo sapiens otoferlin (OTOF) mRNA, complete cds
          Length = 4970

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 cagccacagctcagctcctacagg 239
           ||||||||||||||||||| ||||
Sbjct: 297 cagccacagctcagctcctccagg 274
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 299     tggcggtggcggcgatgggcatgg 322
               ||||||||||||||||||| ||||
Sbjct: 5599216 tggcggtggcggcgatggggatgg 5599193
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>gb|AC135015.3| Mus musculus BAC clone RP24-227L14 from 8, complete sequence
          Length = 169193

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 207    tcctcttgccagccacagctcagctcct 234
              ||||||| ||| ||||||||||||||||
Sbjct: 123914 tcctcttcccacccacagctcagctcct 123887
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>ref|NM_177785.2| Mus musculus cDNA sequence BC049635 (BC049635), mRNA
          Length = 1659

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ttcttggttttcttcctctt 213
           ||||||||||||||||||||
Sbjct: 892 ttcttggttttcttcctctt 873
to top
>gb|AC126930.4| Mus musculus BAC clone RP24-547J4 from 8, complete sequence
          Length = 191241

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 207   tcctcttgccagccacagctcagctcct 234
             ||||||| ||| ||||||||||||||||
Sbjct: 14073 tcctcttcccacccacagctcagctcct 14046
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>ref|NM_153543.1| Mus musculus aldehyde dehydrogenase 1 family, member L2 (Aldh1l2),
            mRNA
          Length = 5959

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  gctcttcttggttttcttcc 209
            ||||||||||||||||||||
Sbjct: 1618 gctcttcttggttttcttcc 1599
to top
>emb|CT030126.6| Mouse DNA sequence from clone RP23-430F12 on chromosome 12, complete
              sequence
          Length = 208848

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Plus

                                                 
Query: 80     tactgaaacataataataaacacaacatatagcag 114
              |||||||||||||||  ||| ||||||||||||||
Sbjct: 168903 tactgaaacataata--aaaaacaacatatagcag 168935
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     gcggcgatgggcatggcggt 326
               ||||||||||||||||||||
Sbjct: 1773687 gcggcgatgggcatggcggt 1773706
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>emb|AL929015.3| Mouse DNA sequence from clone RP23-412F11 on chromosome 2, complete
             sequence
          Length = 142296

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   ctcttcttggttttcttcct 210
             ||||||||||||||||||||
Sbjct: 97241 ctcttcttggttttcttcct 97260
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>emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chromosome 4, complete
            sequence
          Length = 208030

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  ttcttggttttcttcctctt 213
            ||||||||||||||||||||
Sbjct: 7728 ttcttggttttcttcctctt 7747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,771,608
Number of Sequences: 3902068
Number of extensions: 3771608
Number of successful extensions: 84282
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 83788
Number of HSP's gapped (non-prelim): 492
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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