| Clone Name | rbast13b11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR650324.2|CNS0F0RE Tetraodon nigroviridis full-length cDNA Length = 2001 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tgcttttcctttacaagctg 119 |||||||||||||||||||| Sbjct: 1195 tgcttttcctttacaagctg 1176
>emb|CR937051.2|RN394C12 Rattus norvegicus chromosome 1 BAC CH230-394C12, complete sequence Length = 130117 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 aatgcttttcctttacaagctgcc 121 |||||||||| ||||||||||||| Sbjct: 57092 aatgcttttcttttacaagctgcc 57115
>emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O22 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 74974 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 tttacaagctgccatggcac 128 |||||||||||||||||||| Sbjct: 31600 tttacaagctgccatggcac 31619
>emb|AL138539.7|CNS01DWV Human chromosome 14 DNA sequence BAC C-2588C21 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 150350 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gatatagttggaaatacagg 79 |||||||||||||||||||| Sbjct: 3029 gatatagttggaaatacagg 3010
>ref|XM_464481.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1447 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 cttctgtaaacaagtacta 20 ||||||||||||||||||| Sbjct: 1113 cttctgtaaacaagtacta 1095
>gb|AC102365.32| Mus musculus chromosome 3, clone RP23-111A11, complete sequence Length = 208259 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 acagtactaggcagcaagt 58 ||||||||||||||||||| Sbjct: 23892 acagtactaggcagcaagt 23874
>gb|AC126043.3| Mus musculus BAC clone RP24-356N5 from chromosome 13, complete sequence Length = 140207 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 gccaatgcttttcctttac 113 ||||||||||||||||||| Sbjct: 133874 gccaatgcttttcctttac 133856
>gb|AC149306.9| Medicago truncatula clone mth2-88b8, complete sequence Length = 89880 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acttctgtaaacaagtact 19 ||||||||||||||||||| Sbjct: 71648 acttctgtaaacaagtact 71630
>gb|AC069228.26| Homo sapiens 12 BAC RP11-315E17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 142687 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 agttggaaatacaggatgg 83 ||||||||||||||||||| Sbjct: 125539 agttggaaatacaggatgg 125521
>dbj|AK137756.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched library, clone:A030011F10 product:unclassifiable, full insert sequence Length = 1525 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 acagtactaggcagcaagt 58 ||||||||||||||||||| Sbjct: 1322 acagtactaggcagcaagt 1304
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 cttctgtaaacaagtacta 20 ||||||||||||||||||| Sbjct: 5471263 cttctgtaaacaagtacta 5471281
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 aagccaatgcttttccttt 111 ||||||||||||||||||| Sbjct: 17955939 aagccaatgcttttccttt 17955921
>gb|AC158115.2| Mus musculus BAC clone RP24-180C10 from chromosome 13, complete sequence Length = 176518 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gccaatgcttttcctttac 113 ||||||||||||||||||| Sbjct: 106171 gccaatgcttttcctttac 106189
>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0520B06 Length = 142667 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 aagccaatgcttttccttt 111 ||||||||||||||||||| Sbjct: 75774 aagccaatgcttttccttt 75756
>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1524_D08 Length = 143046 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 cttctgtaaacaagtacta 20 ||||||||||||||||||| Sbjct: 124844 cttctgtaaacaagtacta 124862
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0026H03 Length = 151827 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 cttctgtaaacaagtacta 20 ||||||||||||||||||| Sbjct: 15998 cttctgtaaacaagtacta 16016
>dbj|AK065498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025C03, full insert sequence Length = 1447 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 cttctgtaaacaagtacta 20 ||||||||||||||||||| Sbjct: 1113 cttctgtaaacaagtacta 1095
>gb|AC122425.5| Mus musculus BAC clone RP24-174D10 from 3, complete sequence Length = 163172 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 acagtactaggcagcaagt 58 ||||||||||||||||||| Sbjct: 114250 acagtactaggcagcaagt 114232
>gb|AC132407.3| Mus musculus BAC clone RP23-343G12 from 8, complete sequence Length = 205357 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 atagttggaaatacaggat 81 ||||||||||||||||||| Sbjct: 76428 atagttggaaatacaggat 76410 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 954,512 Number of Sequences: 3902068 Number of extensions: 954512 Number of successful extensions: 65591 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65532 Number of HSP's gapped (non-prelim): 59 length of query: 130 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 109 effective length of database: 17,151,101,840 effective search space: 1869470100560 effective search space used: 1869470100560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)