ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast13b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR650324.2|CNS0F0RE Tetraodon nigroviridis full-length cDNA 40 1.5
2emb|CR937051.2|RN394C12 Rattus norvegicus chromosome 1 BAC CH230... 40 1.5
3emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O... 40 1.5
4emb|AL138539.7|CNS01DWV Human chromosome 14 DNA sequence BAC C-2... 40 1.5
5ref|XM_464481.1| Oryza sativa (japonica cultivar-group), mRNA 38 6.1
6gb|AC102365.32| Mus musculus chromosome 3, clone RP23-111A11, co... 38 6.1
7gb|AC126043.3| Mus musculus BAC clone RP24-356N5 from chromosome... 38 6.1
8gb|AC149306.9| Medicago truncatula clone mth2-88b8, complete seq... 38 6.1
9gb|AC069228.26| Homo sapiens 12 BAC RP11-315E17 (Roswell Park Ca... 38 6.1
10dbj|AK137756.1| Mus musculus 6 days neonate skin cDNA, RIKEN ful... 38 6.1
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.1
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.1
13gb|AC158115.2| Mus musculus BAC clone RP24-180C10 from chromosom... 38 6.1
14dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.1
15dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.1
16dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.1
17dbj|AK065498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.1
18gb|AC122425.5| Mus musculus BAC clone RP24-174D10 from 3, comple... 38 6.1
19gb|AC132407.3| Mus musculus BAC clone RP23-343G12 from 8, comple... 38 6.1

>emb|CR650324.2|CNS0F0RE Tetraodon nigroviridis full-length cDNA
          Length = 2001

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  tgcttttcctttacaagctg 119
            ||||||||||||||||||||
Sbjct: 1195 tgcttttcctttacaagctg 1176



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>emb|CR937051.2|RN394C12 Rattus norvegicus chromosome 1 BAC CH230-394C12, complete sequence
          Length = 130117

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 98    aatgcttttcctttacaagctgcc 121
             |||||||||| |||||||||||||
Sbjct: 57092 aatgcttttcttttacaagctgcc 57115



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>emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O22 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 74974

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   tttacaagctgccatggcac 128
             ||||||||||||||||||||
Sbjct: 31600 tttacaagctgccatggcac 31619



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>emb|AL138539.7|CNS01DWV Human chromosome 14 DNA sequence BAC C-2588C21 of library CalTech-D
            from chromosome 14 of Homo sapiens (Human), complete
            sequence
          Length = 150350

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   gatatagttggaaatacagg 79
            ||||||||||||||||||||
Sbjct: 3029 gatatagttggaaatacagg 3010



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>ref|XM_464481.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1447

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 2    cttctgtaaacaagtacta 20
            |||||||||||||||||||
Sbjct: 1113 cttctgtaaacaagtacta 1095



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>gb|AC102365.32| Mus musculus chromosome 3, clone RP23-111A11, complete sequence
          Length = 208259

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    acagtactaggcagcaagt 58
             |||||||||||||||||||
Sbjct: 23892 acagtactaggcagcaagt 23874



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>gb|AC126043.3| Mus musculus BAC clone RP24-356N5 from chromosome 13, complete sequence
          Length = 140207

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 95     gccaatgcttttcctttac 113
              |||||||||||||||||||
Sbjct: 133874 gccaatgcttttcctttac 133856



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>gb|AC149306.9| Medicago truncatula clone mth2-88b8, complete sequence
          Length = 89880

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     acttctgtaaacaagtact 19
             |||||||||||||||||||
Sbjct: 71648 acttctgtaaacaagtact 71630



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>gb|AC069228.26| Homo sapiens 12 BAC RP11-315E17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 142687

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 65     agttggaaatacaggatgg 83
              |||||||||||||||||||
Sbjct: 125539 agttggaaatacaggatgg 125521



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>dbj|AK137756.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:A030011F10 product:unclassifiable, full
            insert sequence
          Length = 1525

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 40   acagtactaggcagcaagt 58
            |||||||||||||||||||
Sbjct: 1322 acagtactaggcagcaagt 1304



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 2       cttctgtaaacaagtacta 20
               |||||||||||||||||||
Sbjct: 5471263 cttctgtaaacaagtacta 5471281



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 93       aagccaatgcttttccttt 111
                |||||||||||||||||||
Sbjct: 17955939 aagccaatgcttttccttt 17955921



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>gb|AC158115.2| Mus musculus BAC clone RP24-180C10 from chromosome 13, complete sequence
          Length = 176518

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 95     gccaatgcttttcctttac 113
              |||||||||||||||||||
Sbjct: 106171 gccaatgcttttcctttac 106189



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>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0520B06
          Length = 142667

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 93    aagccaatgcttttccttt 111
             |||||||||||||||||||
Sbjct: 75774 aagccaatgcttttccttt 75756



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>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1524_D08
          Length = 143046

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      cttctgtaaacaagtacta 20
              |||||||||||||||||||
Sbjct: 124844 cttctgtaaacaagtacta 124862



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>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0026H03
          Length = 151827

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     cttctgtaaacaagtacta 20
             |||||||||||||||||||
Sbjct: 15998 cttctgtaaacaagtacta 16016



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>dbj|AK065498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025C03, full
            insert sequence
          Length = 1447

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 2    cttctgtaaacaagtacta 20
            |||||||||||||||||||
Sbjct: 1113 cttctgtaaacaagtacta 1095



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>gb|AC122425.5| Mus musculus BAC clone RP24-174D10 from 3, complete sequence
          Length = 163172

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     acagtactaggcagcaagt 58
              |||||||||||||||||||
Sbjct: 114250 acagtactaggcagcaagt 114232



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>gb|AC132407.3| Mus musculus BAC clone RP23-343G12 from 8, complete sequence
          Length = 205357

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    atagttggaaatacaggat 81
             |||||||||||||||||||
Sbjct: 76428 atagttggaaatacaggat 76410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 954,512
Number of Sequences: 3902068
Number of extensions: 954512
Number of successful extensions: 65591
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65532
Number of HSP's gapped (non-prelim): 59
length of query: 130
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 109
effective length of database: 17,151,101,840
effective search space: 1869470100560
effective search space used: 1869470100560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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