ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast13b10 |
|---|---|
| Clone Library Name | barley_pub |
>ARGC_SYNP6 (Q5N5V5) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 352 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/66 (30%), Positives = 29/66 (43%) Frame = +3 Query: 18 IYSQLRGPKHEMPFTTVDQHIIFD*FYSLMPLAHVKARFSTKQSIRAPGTKYIQACIRYD 197 IY++LR P TT D ++ FY P+ V + Q+ A GT + D Sbjct: 251 IYAKLRDPN----LTTEDCLTVYQAFYRNAPMVKVLTHGTYPQTKWAAGTNLCYLGLEVD 306 Query: 198 GTTGKI 215 TG+I Sbjct: 307 ARTGRI 312
>RL5_RAT (P09895) 60S ribosomal protein L5| Length = 296 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = +2 Query: 71 PAYNFRLVLQPYASCSCEGQVL-DKTIHKGSRDKVYSSLYTLRRYNGENFNISGVTTLPH 247 P Y ++ L YA+ C G +L + +++ DK+Y + NG+ +N+ + P Sbjct: 83 PKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEV---NGDEYNVESIDGQPG 139 Query: 248 A 250 A Sbjct: 140 A 140
>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)| Length = 2570 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 346 CCEPKEKGSGHISCIPHVHLGRVPHNCHRLAPGVRQCS 233 C E GH C PH NC ++APG R C+ Sbjct: 1453 CSEVDPCAHGHGGCSPHA-------NCTKVAPGQRTCT 1483
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -3 Query: 346 CCEPKEKGSGHISCIPHVHLGRVPHNCHRLAPGVRQCS 233 C E SGH C P+ NC ++APG R C+ Sbjct: 1454 CSEVDPCASGHGGCSPYA-------NCTKVAPGQRTCT 1484
>GLGB_SYNPX (Q7U646) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 775 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +1 Query: 310 IYGQSLSPWVHSSAHE-WVGSPGAPR 384 +Y L W+H+SA E W+ G+PR Sbjct: 249 VYEMHLGSWIHASAEEPWIQPDGSPR 274
>YL107_MIMIV (Q5UPH7) Putative BTB/POZ domain-containing protein L107| Length = 501 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +2 Query: 155 GSRDKVYSSLYTLRRYNGENFNISGVTTLPH 247 GS+ +VY + + Y E+FN+S +T + H Sbjct: 403 GSKIRVYDWVNNIFTYENESFNVSDITYIDH 433
>RL5_CHICK (P22451) 60S ribosomal protein L5| Length = 296 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +2 Query: 71 PAYNFRLVLQPYASCSCEGQVL-DKTIHKGSRDKVYSSLYTLRRYNGENFNISGVTTLPH 247 P Y ++ L YA+ C G +L + ++K DK+Y + G+ +N+ V P Sbjct: 83 PKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEV---TGDEYNVESVDGKPG 139 Query: 248 A 250 A Sbjct: 140 A 140
>RL5B_XENLA (P15126) 60S ribosomal protein L5-B| Length = 295 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +2 Query: 71 PAYNFRLVLQPYASCSCEGQVL-DKTIHKGSRDKVYSSLYTLRRYNGENFNISGVTTLPH 247 P Y ++ L YA+ C G +L + ++K DKVY + G+ +N+ V P Sbjct: 83 PKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEV---TGDEYNVESVDGEPG 139 Query: 248 A 250 A Sbjct: 140 A 140
>RL5A_XENLA (P15125) 60S ribosomal protein L5-A| Length = 295 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +2 Query: 71 PAYNFRLVLQPYASCSCEGQVL-DKTIHKGSRDKVYSSLYTLRRYNGENFNISGVTTLPH 247 P Y ++ L YA+ C G +L + ++K DKVY + G+ +N+ + P Sbjct: 83 PKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEV---TGDEYNVESIDGEPG 139 Query: 248 A 250 A Sbjct: 140 A 140
>RL5_MOUSE (P47962) 60S ribosomal protein L5| Length = 296 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +2 Query: 71 PAYNFRLVLQPYASCSCEGQVL-DKTIHKGSRDKVYSSLYTLRRYNGENFNISGVTTLPH 247 P Y ++ L YA+ C G +L + +++ DK+Y + NG +N+ + P Sbjct: 83 PKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEV---NGGEYNVESIDGQPG 139 Query: 248 A 250 A Sbjct: 140 A 140
>RL5_MACFA (Q4R5M0) 60S ribosomal protein L5| Length = 296 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +2 Query: 71 PAYNFRLVLQPYASCSCEGQVL-DKTIHKGSRDKVYSSLYTLRRYNGENFNISGVTTLPH 247 P Y ++ L YA+ C G +L + +++ DK+Y + G+ +N+ + P Sbjct: 83 PKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEV---TGDEYNVESIDGQPG 139 Query: 248 A 250 A Sbjct: 140 A 140
>RL5_HUMAN (P46777) 60S ribosomal protein L5| Length = 296 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +2 Query: 71 PAYNFRLVLQPYASCSCEGQVL-DKTIHKGSRDKVYSSLYTLRRYNGENFNISGVTTLPH 247 P Y ++ L YA+ C G +L + +++ DK+Y + G+ +N+ + P Sbjct: 83 PKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEV---TGDEYNVESIDGQPG 139 Query: 248 A 250 A Sbjct: 140 A 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,823,465 Number of Sequences: 219361 Number of extensions: 1205131 Number of successful extensions: 4324 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4208 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4322 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
