ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast13b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000002.1| Sminthopsis macroura target 1 genomic scaffold 44 0.30
2gb|AC123967.3| Sminthopsis macroura clone 102C13, complete sequence 44 0.30
3emb|BX927184.5| Zebrafish DNA sequence from clone DKEY-125I20 in... 42 1.2
4gb|AC108099.2| Homo sapiens chromosome 5 clone RP11-112L7, compl... 42 1.2
5gb|AC137551.1| Homo sapiens chromosome 5 clone RP11-867C24, comp... 42 1.2
6emb|BX005029.13| Zebrafish DNA sequence from clone CH211-182D3 i... 42 1.2
7gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence 40 4.7
8emb|AL773522.15| Mouse DNA sequence from clone RP23-148P20 on ch... 40 4.7
9gb|AF395821.1| Oryctolagus cuniculus factor XI mRNA, complete cds 40 4.7

>gb|DP000002.1| Sminthopsis macroura target 1 genomic scaffold
          Length = 305394

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 135   tgattagctattaagaaagggt 156
             ||||||||||||||||||||||
Sbjct: 39843 tgattagctattaagaaagggt 39864



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>gb|AC123967.3| Sminthopsis macroura clone 102C13, complete sequence
          Length = 59818

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 135   tgattagctattaagaaagggt 156
             ||||||||||||||||||||||
Sbjct: 39843 tgattagctattaagaaagggt 39864



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>emb|BX927184.5| Zebrafish DNA sequence from clone DKEY-125I20 in linkage group 5,
             complete sequence
          Length = 160345

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 335   ttcagagtatttgaagaataa 355
             |||||||||||||||||||||
Sbjct: 54294 ttcagagtatttgaagaataa 54314



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>gb|AC108099.2| Homo sapiens chromosome 5 clone RP11-112L7, complete sequence
          Length = 172945

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 225   tgcatttgtgtgaagaccatt 245
             |||||||||||||||||||||
Sbjct: 64419 tgcatttgtgtgaagaccatt 64399



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>gb|AC137551.1| Homo sapiens chromosome 5 clone RP11-867C24, complete sequence
          Length = 183535

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    tgcatttgtgtgaagaccatt 245
              |||||||||||||||||||||
Sbjct: 158200 tgcatttgtgtgaagaccatt 158180



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>emb|BX005029.13| Zebrafish DNA sequence from clone CH211-182D3 in linkage group 5,
              complete sequence
          Length = 128948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 335    ttcagagtatttgaagaataa 355
              |||||||||||||||||||||
Sbjct: 102751 ttcagagtatttgaagaataa 102731



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>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence
          Length = 203581

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     caaataaagtaagaagtacaaatc 105
              |||||||||| |||||||||||||
Sbjct: 165694 caaataaagtgagaagtacaaatc 165671



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     caaataaagtaagaagtacaaatc 105
              |||||||||| |||||||||||||
Sbjct: 145500 caaataaagtgagaagtacaaatc 145477



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>emb|AL773522.15| Mouse DNA sequence from clone RP23-148P20 on chromosome 4, complete
             sequence
          Length = 185592

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    gagcaaacatctttcaaaca 77
             ||||||||||||||||||||
Sbjct: 36956 gagcaaacatctttcaaaca 36975



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>gb|AF395821.1| Oryctolagus cuniculus factor XI mRNA, complete cds
          Length = 2331

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  aagtgaagagcaaacatctt 70
           ||||||||||||||||||||
Sbjct: 277 aagtgaagagcaaacatctt 258


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,062,217
Number of Sequences: 3902068
Number of extensions: 3062217
Number of successful extensions: 59518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59503
Number of HSP's gapped (non-prelim): 15
length of query: 355
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 333
effective length of database: 17,147,199,772
effective search space: 5710017524076
effective search space used: 5710017524076
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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