| Clone Name | rbast13a09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL732436.6| Zebrafish DNA sequence from clone BUSM1-21A14 in linkage group 9, complete sequence Length = 123962 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 15 attaattactttattacaattgta 38 |||||||||||||||||||||||| Sbjct: 41763 attaattactttattacaattgta 41740
>emb|AL663114.4| Mouse DNA sequence from clone RP23-269C21 on chromosome 11 Contins the 3' end of the Abca13 gene for ATP-binding cassette sub-family A (ABC1) member 13, complete sequence Length = 96411 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 tgtagatcatgcatgcaggca 342 ||||||||||||||||||||| Sbjct: 58740 tgtagatcatgcatgcaggca 58720
>gb|AC122414.4| Mus musculus BAC clone RP24-150D8 from chromosome 5, complete sequence Length = 186986 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 195 acacgcacagatacgtacacgcaacacacata 226 |||| ||||||| | ||||||||||||||||| Sbjct: 175824 acacacacagatgcatacacgcaacacacata 175855
>emb|AL133538.16| Human DNA sequence from clone RP11-550N16 on chromosome 6q26-27 Contains a CpG island, complete sequence Length = 109238 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 gtaaattatgaagcaaataa 278 |||||||||||||||||||| Sbjct: 93026 gtaaattatgaagcaaataa 93007
>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02, complete sequence Length = 167988 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gcatgcgcgtacgtacgtac 359 |||||||||||||||||||| Sbjct: 44518 gcatgcgcgtacgtacgtac 44499
>emb|BX649516.8| Zebrafish DNA sequence from clone DKEY-51D8 in linkage group 14, complete sequence Length = 209974 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 cacacgcacagatacgtacacgca 217 |||||||||| ||||||||||||| Sbjct: 13468 cacacgcacatatacgtacacgca 13445
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gcatgcgcgtacgtacgtac 359 |||||||||||||||||||| Sbjct: 23327021 gcatgcgcgtacgtacgtac 23327002
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgtacgtacgtacgtagtat 366 |||||||||||||||||||| Sbjct: 3160460 cgtacgtacgtacgtagtat 3160441
>gb|AC140675.5| Mus musculus BAC clone RP23-44J10 from chromosome 5, complete sequence Length = 229269 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 195 acacgcacagatacgtacacgcaacacacata 226 |||| ||||||| | ||||||||||||||||| Sbjct: 36388 acacacacagatgcatacacgcaacacacata 36419
>gb|AC152832.3| Ornithorhynchus anatinus BAC clone OABb-104A1 from chromosome unknown, complete sequence Length = 161382 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 tggatggattgtagatcatg 332 |||||||||||||||||||| Sbjct: 30051 tggatggattgtagatcatg 30070
>dbj|AP005892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0011D16 Length = 177329 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgtacgtacgtacgtagtat 366 |||||||||||||||||||| Sbjct: 36773 cgtacgtacgtacgtagtat 36754
>dbj|AP005727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0038I09 Length = 153520 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 cgtacgtacgtacgtagtat 366 |||||||||||||||||||| Sbjct: 70123 cgtacgtacgtacgtagtat 70104
>emb|BX936454.25| Zebrafish DNA sequence from clone DKEY-29M11 in linkage group 20, complete sequence Length = 225683 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 atgatattaattactttattacaa 33 |||||| ||||||||||||||||| Sbjct: 16061 atgataataattactttattacaa 16038
>emb|AL713913.10| Mouse DNA sequence from clone RP23-125F10 on chromosome 2, complete sequence Length = 190485 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ggagaactccatccattcca 135 |||||||||||||||||||| Sbjct: 5327 ggagaactccatccattcca 5346 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,969,415 Number of Sequences: 3902068 Number of extensions: 2969415 Number of successful extensions: 72914 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72814 Number of HSP's gapped (non-prelim): 100 length of query: 369 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 347 effective length of database: 17,147,199,772 effective search space: 5950078320884 effective search space used: 5950078320884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)