ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast12h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HCDR_XANP2 (Q56840) 2-(R)-hydroxypropyl-CoM dehydrogenase (EC 1.... 29 4.1
2HSP22_DROME (P02515) Heat shock protein 22 28 6.9

>HCDR_XANP2 (Q56840) 2-(R)-hydroxypropyl-CoM dehydrogenase (EC 1.1.1.268)|
           (R-HPCDH) (Aliphatic epoxide carboxylation component
           III)
          Length = 249

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 27  RFTQAKLRSQLT*VVPQIELGFHGTLANAVQFEAG 131
           R  Q +LR Q+   +PQ E+G    +A+AV F AG
Sbjct: 195 RLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAG 229



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>HSP22_DROME (P02515) Heat shock protein 22|
          Length = 174

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 135 LPRLQTVPHSLMFHETPVQSVAPPRSTE-ISVW 40
           +PRL + P    FHE PV SVA PR+ + I+ W
Sbjct: 17  MPRLSS-PFHAFFHEPPVWSVALPRNWQHIARW 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,526,133
Number of Sequences: 219361
Number of extensions: 319917
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 80,573,946
effective HSP length: 26
effective length of database: 74,870,560
effective search space used: 1796893440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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