| Clone Name | rbast12h09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF241726.3| Homo sapiens chromosome X, clones RP5-819E23 and RP1-137P19, Map p11.4, complete sequences Length = 244978 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Minus Query: 15 aagcatatcatacggttcaccca 37 ||||||||||||||||||||||| Sbjct: 40979 aagcatatcatacggttcaccca 40957
>dbj|D00230.2| Homo sapiens OTC gene for ornithine transcarbamylase, complete cds Length = 74126 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Minus Query: 15 aagcatatcatacggttcaccca 37 ||||||||||||||||||||||| Sbjct: 73295 aagcatatcatacggttcaccca 73273
>ref|NM_000531.3| Homo sapiens ornithine carbamoyltransferase (OTC), mRNA Length = 1927 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Minus Query: 15 aagcatatcatacggttcaccca 37 ||||||||||||||||||||||| Sbjct: 1787 aagcatatcatacggttcaccca 1765
>emb|X17116.1|HSJH Human DNA for immunoglobulin alpha heavy chain from a case of alpha heavy chain disease Length = 3882 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 tttgtgcaaacaagcatatca 24 ||||||||||||||||||||| Sbjct: 1838 tttgtgcaaacaagcatatca 1858
>ref|XM_689821.1| PREDICTED: Danio rerio similar to diacylglycerol kinase, zeta 104kDa isoform 3 (LOC566545), mRNA Length = 2739 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gtgcaaacaagcatatcata 26 |||||||||||||||||||| Sbjct: 540 gtgcaaacaagcatatcata 559
>ref|XM_689696.1| PREDICTED: Danio rerio DGKI protein (DGKI), mRNA Length = 2304 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gtgcaaacaagcatatcata 26 |||||||||||||||||||| Sbjct: 1314 gtgcaaacaagcatatcata 1333
>gb|BC093270.1| Danio rerio DGKI protein, mRNA (cDNA clone IMAGE:7436001), partial cds Length = 1076 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gtgcaaacaagcatatcata 26 |||||||||||||||||||| Sbjct: 912 gtgcaaacaagcatatcata 931
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 agtttgaagccggggcaaat 137 |||||||||||||||||||| Sbjct: 3335881 agtttgaagccggggcaaat 3335862
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 acagattgaactggggttt 92 ||||||||||||||||||| Sbjct: 1768364 acagattgaactggggttt 1768382
>gb|AC175366.1| Pan troglodytes chromosome X clone CH251-499L9 map human ortholog p11.4, complete sequence Length = 217335 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 15 aagcatatcatacggttcaccca 37 ||||||||||||| ||||||||| Sbjct: 94413 aagcatatcatacagttcaccca 94391 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 927,704 Number of Sequences: 3902068 Number of extensions: 927704 Number of successful extensions: 56245 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56202 Number of HSP's gapped (non-prelim): 43 length of query: 154 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 132 effective length of database: 17,147,199,772 effective search space: 2263430369904 effective search space used: 2263430369904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)