ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast12h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF241726.3| Homo sapiens chromosome X, clones RP5-819E23 and ... 46 0.030
2dbj|D00230.2| Homo sapiens OTC gene for ornithine transcarbamyla... 46 0.030
3ref|NM_000531.3| Homo sapiens ornithine carbamoyltransferase (OT... 46 0.030
4emb|X17116.1|HSJH Human DNA for immunoglobulin alpha heavy chain... 42 0.47
5ref|XM_689821.1| PREDICTED: Danio rerio similar to diacylglycero... 40 1.9
6ref|XM_689696.1| PREDICTED: Danio rerio DGKI protein (DGKI), mRNA 40 1.9
7gb|BC093270.1| Danio rerio DGKI protein, mRNA (cDNA clone IMAGE:... 40 1.9
8gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 1.9
9gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 38 7.4
10gb|AC175366.1| Pan troglodytes chromosome X clone CH251-499L9 ma... 38 7.4

>gb|AF241726.3| Homo sapiens chromosome X, clones RP5-819E23 and RP1-137P19, Map p11.4,
             complete sequences
          Length = 244978

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 15    aagcatatcatacggttcaccca 37
             |||||||||||||||||||||||
Sbjct: 40979 aagcatatcatacggttcaccca 40957



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>dbj|D00230.2| Homo sapiens OTC gene for ornithine transcarbamylase, complete cds
          Length = 74126

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 15    aagcatatcatacggttcaccca 37
             |||||||||||||||||||||||
Sbjct: 73295 aagcatatcatacggttcaccca 73273



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>ref|NM_000531.3| Homo sapiens ornithine carbamoyltransferase (OTC), mRNA
          Length = 1927

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 15   aagcatatcatacggttcaccca 37
            |||||||||||||||||||||||
Sbjct: 1787 aagcatatcatacggttcaccca 1765



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>emb|X17116.1|HSJH Human DNA for immunoglobulin alpha heavy chain from a case of alpha
            heavy chain disease
          Length = 3882

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 4    tttgtgcaaacaagcatatca 24
            |||||||||||||||||||||
Sbjct: 1838 tttgtgcaaacaagcatatca 1858



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>ref|XM_689821.1| PREDICTED: Danio rerio similar to diacylglycerol kinase, zeta
           104kDa isoform 3 (LOC566545), mRNA
          Length = 2739

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   gtgcaaacaagcatatcata 26
           ||||||||||||||||||||
Sbjct: 540 gtgcaaacaagcatatcata 559



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>ref|XM_689696.1| PREDICTED: Danio rerio DGKI protein (DGKI), mRNA
          Length = 2304

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    gtgcaaacaagcatatcata 26
            ||||||||||||||||||||
Sbjct: 1314 gtgcaaacaagcatatcata 1333



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>gb|BC093270.1| Danio rerio DGKI protein, mRNA (cDNA clone IMAGE:7436001), partial
           cds
          Length = 1076

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   gtgcaaacaagcatatcata 26
           ||||||||||||||||||||
Sbjct: 912 gtgcaaacaagcatatcata 931



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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     agtttgaagccggggcaaat 137
               ||||||||||||||||||||
Sbjct: 3335881 agtttgaagccggggcaaat 3335862



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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 74      acagattgaactggggttt 92
               |||||||||||||||||||
Sbjct: 1768364 acagattgaactggggttt 1768382



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>gb|AC175366.1| Pan troglodytes chromosome X clone CH251-499L9 map human ortholog
             p11.4, complete sequence
          Length = 217335

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 15    aagcatatcatacggttcaccca 37
             ||||||||||||| |||||||||
Sbjct: 94413 aagcatatcatacagttcaccca 94391


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 927,704
Number of Sequences: 3902068
Number of extensions: 927704
Number of successful extensions: 56245
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56202
Number of HSP's gapped (non-prelim): 43
length of query: 154
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 132
effective length of database: 17,147,199,772
effective search space: 2263430369904
effective search space used: 2263430369904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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