ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast12b07 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 30.4 bits (67), Expect = 1.2 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +1 Query: 121 EAGVQSSGRPRWPEPQRMNFLRPVTASPAQARRSGDTSLLGLARSVTLGIPL 276 E + SSG P W P+R F RPV S + + + R+ T GIP+ Sbjct: 726 EDSMTSSGAPFWSAPKR--FPRPVEFSSSDPSQLSFILAAAILRAETFGIPI 775
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 30.4 bits (67), Expect = 1.2 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +1 Query: 121 EAGVQSSGRPRWPEPQRMNFLRPVTASPAQARRSGDTSLLGLARSVTLGIPL 276 E + SSG P W P+R F RPV S + + + R+ T GIP+ Sbjct: 726 EDSMTSSGAPFWSAPKR--FPRPVEFSSSDQSQLSFILAAAILRAETFGIPI 775
>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22| Length = 881 Score = 30.4 bits (67), Expect = 1.2 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +3 Query: 15 DSQMVSIYRWCCTNRGSKASNKRTHRGNKEPVGARRSRRPI----QWATQMAGASAHELS 182 DS+ VS + C T GS S R++ ++ P +R RR I ++ ++G+S Sbjct: 639 DSESVSSHSTCSTCTGSSRSRSRSYSYSRSPSRSRGRRRSISRGRSYSRSVSGSSRGRSY 698 Query: 183 QTRHCFSGSGETKRRHQS 236 + S S K R +S Sbjct: 699 TPSYSRSRSPVPKSRRRS 716
>ATU_DROME (Q94546) Another transcription unit protein| Length = 725 Score = 29.6 bits (65), Expect = 2.1 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = +1 Query: 73 QTNAHTEATRSQSEH----GEAGVQSSGRPRWPEPQRMNFLRPVTASPAQARRSG 225 Q + + RS+S H G A + SG P P+ R L+ + Q+RRSG Sbjct: 76 QLSGSARSKRSRSAHSRRSGSARSRKSGTPESPQSHRSGSLQSRKSGSPQSRRSG 130
>STIL_DROME (P92189) Protein stand still| Length = 321 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +2 Query: 50 HQPRLKSLKQTHTQRQQGASRSTEKQASNPVGDPD 154 H+ ++K++ Q H Q Q+GA+R E S+ P+ Sbjct: 135 HELKIKTVFQRHKQEQEGATRKLEDSTSDKANLPN 169
>VE2_HPV25 (P36787) Regulatory protein E2| Length = 502 Score = 29.3 bits (64), Expect = 2.7 Identities = 21/71 (29%), Positives = 29/71 (40%) Frame = +1 Query: 37 TDGVAPTAAQKPQTNAHTEATRSQSEHGEAGVQSSGRPRWPEPQRMNFLRPVTASPAQAR 216 T + AA+ P T + + RSQ AG GR R +R + L S R Sbjct: 322 TTTTSDRAARSPSTTSSATSQRSQRSRSRAGSSRGGRGR--GGRRRHRLSESPTSKRSRR 379 Query: 217 RSGDTSLLGLA 249 SG L G++ Sbjct: 380 ESGSVRLHGVS 390
>NEUM_BOVIN (P06836) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Calmodulin-binding protein P-57) Length = 239 Score = 28.9 bits (63), Expect = 3.5 Identities = 17/71 (23%), Positives = 32/71 (45%) Frame = +1 Query: 49 APTAAQKPQTNAHTEATRSQSEHGEAGVQSSGRPRWPEPQRMNFLRPVTASPAQARRSGD 228 AP +++ +A TE+ S ++ P EP++ + VTA+ A A + D Sbjct: 128 APAPSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATAPAAED 187 Query: 229 TSLLGLARSVT 261 + + A+ T Sbjct: 188 AAAMATAQPPT 198
>OTX2_XENLA (Q91813) Homeobox protein OTX2 (XOTX2) (Orthodenticle 2)| (Orthodenticle-A-like protein) Length = 288 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Frame = +2 Query: 59 RLKSLKQTHTQRQQGASRSTE--KQASNPVGDPDGRSLSA*TFSDPSXXXXXXXDEAETP 232 R +Q Q+Q G K+ ++PV + S ++ FS PS + P Sbjct: 89 RRAKCRQQQQQQQNGGQNKVRPSKKKTSPVREVSSESGTSGQFSPPSSTSVPVISSSTAP 148 Query: 233 VSLVSP 250 VS+ SP Sbjct: 149 VSIWSP 154
>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)| (Fragments) Length = 368 Score = 28.5 bits (62), Expect = 4.6 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Frame = +1 Query: 16 IPRWFRFTDGVAPTAAQKPQTNAHTEATRS----------QSEHGEAGVQSSGRPRWPEP 165 + +W +FT VAP +A+KP A R + GE GV + +P Sbjct: 99 LSQWDQFTAQVAPISAKKPYMVASGNHERDWPNTGGFFDVKDSGGECGVPAETMYYYPAE 158 Query: 166 QRMNF 180 R NF Sbjct: 159 NRANF 163
>COL15_ARATH (Q9C7E8) Zinc finger protein CONSTANS-LIKE 15| Length = 433 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = +3 Query: 66 KASNKRTHRGNKEPVGARRSRRPIQWATQMAGASAHELSQTRHCFSGSGETKR 224 K KR+ G +P + + RPI + ++ S+ +L T H S +T R Sbjct: 318 KDDYKRSTSGQVQPTKSESNNRPITFGSEKGSNSSSDLHFTEHIAGTSCKTTR 370
>DPOL_ASFB7 (P42489) DNA polymerase (EC 2.7.7.7)| Length = 1207 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +2 Query: 68 SLKQTHTQRQQGASRSTEKQASNPVGDPDGRSL 166 S+K+ QR AS+ K A NP G+P G +L Sbjct: 1056 SMKKMVEQRATLASKPAGKPAGNPAGNPAGNAL 1088
>LPXK_BRUSU (P65326) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 341 Score = 28.1 bits (61), Expect = 6.0 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Frame = -1 Query: 268 SQESPIWRDQGDWCLRFVSPEPEKQ*RV*ESSCAEAPAIWVAHWI-GRLLLRA--PTGSL 98 S+ P W D+ DW + A APA W+ + GR L+RA P SL Sbjct: 3 SEAPPFWWDEPDW-----------------RALALAPAAWIYGRVSGRRLIRAVPPRVSL 45 Query: 97 LPLCVRLF 74 LCV F Sbjct: 46 PVLCVGNF 53
>LPXK_BRUME (P65325) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 341 Score = 28.1 bits (61), Expect = 6.0 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Frame = -1 Query: 268 SQESPIWRDQGDWCLRFVSPEPEKQ*RV*ESSCAEAPAIWVAHWI-GRLLLRA--PTGSL 98 S+ P W D+ DW + A APA W+ + GR L+RA P SL Sbjct: 3 SEAPPFWWDEPDW-----------------RALALAPAAWIYGRVSGRRLIRAVPPRVSL 45 Query: 97 LPLCVRLF 74 LCV F Sbjct: 46 PVLCVGNF 53
>LPXK_BRUAB (Q579M9) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 341 Score = 28.1 bits (61), Expect = 6.0 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Frame = -1 Query: 268 SQESPIWRDQGDWCLRFVSPEPEKQ*RV*ESSCAEAPAIWVAHWI-GRLLLRA--PTGSL 98 S+ P W D+ DW + A APA W+ + GR L+RA P SL Sbjct: 3 SEAPPFWWDEPDW-----------------RALALAPAAWIYGRVSGRRLIRAVPPRVSL 45 Query: 97 LPLCVRLF 74 LCV F Sbjct: 46 PVLCVGNF 53
>LPXK_BRUA2 (Q2YIH4) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 341 Score = 28.1 bits (61), Expect = 6.0 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Frame = -1 Query: 268 SQESPIWRDQGDWCLRFVSPEPEKQ*RV*ESSCAEAPAIWVAHWI-GRLLLRA--PTGSL 98 S+ P W D+ DW + A APA W+ + GR L+RA P SL Sbjct: 3 SEAPPFWWDEPDW-----------------RALALAPAAWIYGRVSGRRLIRAVPPRVSL 45 Query: 97 LPLCVRLF 74 LCV F Sbjct: 46 PVLCVGNF 53
>CAH9_HUMAN (Q16790) Carbonic anhydrase 9 precursor (EC 4.2.1.1) (Carbonic| anhydrase IX) (Carbonate dehydratase IX) (CA-IX) (CAIX) (Membrane antigen MN) (P54/58N) (Renal cell carcinoma-associated antigen G250) (RCC-associated antigen G250) (pMW1) Length = 459 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = +1 Query: 49 APTAAQKPQTNAHTEATRSQSEHGEAGVQSSGRPRWP 159 AP Q+PQ NAH + H G G P WP Sbjct: 118 APGDPQEPQNNAHRDKEGDDQSHWRYG----GDPPWP 150
>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein 1| (PRAX-1) (Peripheral benzodiazepine receptor-interacting protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1) Length = 1857 Score = 28.1 bits (61), Expect = 6.0 Identities = 18/60 (30%), Positives = 24/60 (40%) Frame = +1 Query: 52 PTAAQKPQTNAHTEATRSQSEHGEAGVQSSGRPRWPEPQRMNFLRPVTASPAQARRSGDT 231 P + T E +E GEA Q R P+ + + LRP TA AR +T Sbjct: 1560 PERRGRSATGRAKEPLSRATETGEARGQDGSGRRGPQKRGVRVLRPSTAELVPARSPSET 1619
>STC2_STAAU (P17855) Staphylocoagulase precursor| Length = 715 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/56 (28%), Positives = 23/56 (41%) Frame = +1 Query: 43 GVAPTAAQKPQTNAHTEATRSQSEHGEAGVQSSGRPRWPEPQRMNFLRPVTASPAQ 210 G PT + +TNA+ T HG V RP + +P + N T + Q Sbjct: 575 GARPTYNKPSETNAYNVTT-----HGNGQVSYGARPTYKKPSKTNAYNVTTHANGQ 625 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/57 (28%), Positives = 23/57 (40%) Frame = +1 Query: 43 GVAPTAAQKPQTNAHTEATRSQSEHGEAGVQSSGRPRWPEPQRMNFLRPVTASPAQA 213 G PT + +TNA+ T HG V RP + +P + N T + A Sbjct: 656 GARPTQNKPSETNAYNVTT-----HGNGQVSYGARPTYNKPSKTNAYNVTTHADGTA 707
>NUCM_HUMAN (O75306) NADH-ubiquinone oxidoreductase 49 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-49KD) (CI-49KD) Length = 463 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Frame = +3 Query: 39 RWCCTNRGSKASNKRTHRGNKEPV----GARRSRRPIQWATQMAGASAHELSQTRH 194 R C RG A R G + P+ G R+ + ++WA Q GA + +T H Sbjct: 5 RALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 60
>RK21_PORPU (P51209) Chloroplast 50S ribosomal protein L21| Length = 104 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +1 Query: 130 VQSSGRPRWPEPQRMNFLRPVTASPAQARRSGDTSLLGLARSVTLGIPLIQ 282 +++SG+ W E R L + P Q+ G LL V+LG P I+ Sbjct: 6 IEASGKQLWIEEGRYYDLNHIPVEPGQSIILGKVLLLNKDGHVSLGHPCIE 56
>FBSH_MOUSE (Q8R089) Probable fibrosin-1 long transcript protein| Length = 378 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/29 (51%), Positives = 16/29 (55%) Frame = -3 Query: 272 GIPRVTDLARPRRLVSPLRLA*AGEAVTG 186 G P T LA P RL P R AGE +TG Sbjct: 276 GFPEPTWLAGPPRLARPPRFYEAGEELTG 304
>ZN295_HUMAN (Q9ULJ3) Zinc finger protein 295 (Zinc finger and BTB| domain-containing protein 21) Length = 1066 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 77 QTHTQRQQGASRSTEKQASNPVGDPDGRSLSA*TFSDPSXXXXXXXDEAETPVSLVS 247 Q H R AS+ST+++ ++PV + ++ + SDPS +A T + S Sbjct: 403 QPHRLRSFSASQSTDREGASPVTEVRIKTEPSSPLSDPSDIIRVTVGDAATTAAASS 459
>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)| Length = 1992 Score = 27.7 bits (60), Expect = 7.9 Identities = 22/61 (36%), Positives = 31/61 (50%) Frame = +1 Query: 49 APTAAQKPQTNAHTEATRSQSEHGEAGVQSSGRPRWPEPQRMNFLRPVTASPAQARRSGD 228 +P++A+KP+ HTE S SE + +S R E Q + P T S A R+SG Sbjct: 85 SPSSAKKPKALQHTE---SPSETNKPHSKSKKRHLDQEQQLKSAQSPST-SKAHTRKSGA 140 Query: 229 T 231 T Sbjct: 141 T 141
>PSN2_CHICK (Q90X07) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2| NTF subunit; Presenilin-2 CTF subunit] Length = 451 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +2 Query: 77 QTHTQRQQGASRSTEKQASNPVGDPDGR 160 QTH +RQ G+SRS A D D R Sbjct: 45 QTHRKRQTGSSRSPNNVADEDASDSDVR 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.129 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,730,824 Number of Sequences: 219361 Number of extensions: 842700 Number of successful extensions: 2718 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2653 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2717 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
