ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbast12a05 |
|---|---|
| Clone Library Name | barley_pub |
>FDH1_ORYSA (Q9SXP2) Formate dehydrogenase 1, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 1) (FDH 1) Length = 376 Score = 112 bits (280), Expect = 2e-25 Identities = 51/58 (87%), Positives = 55/58 (94%) Frame = -1 Query: 366 WRYMPNNAMTPHISGTTIDGQLRYAAGVKDMLERYFKGQDFPEPNYIVKEGKLASQYQ 193 WRYMPN+AMTPHISGTTID QLRYAAGVKDML+RYFKG+DFP NYIVKEG+LASQYQ Sbjct: 319 WRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376
>FDH2_ORYSA (Q67U69) Formate dehydrogenase 2, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 2) (FDH 2) Length = 378 Score = 110 bits (276), Expect = 6e-25 Identities = 50/58 (86%), Positives = 54/58 (93%) Frame = -1 Query: 366 WRYMPNNAMTPHISGTTIDGQLRYAAGVKDMLERYFKGQDFPEPNYIVKEGKLASQYQ 193 WRYMPN+AMTPH SGTTIDGQLRYAAGVKDML+RYFKG+DFP NYIVK G+LASQYQ Sbjct: 321 WRYMPNHAMTPHCSGTTIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLASQYQ 378
>FDH_HORVU (Q9ZRI8) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 377 Score = 109 bits (272), Expect = 2e-24 Identities = 49/58 (84%), Positives = 55/58 (94%) Frame = -1 Query: 366 WRYMPNNAMTPHISGTTIDGQLRYAAGVKDMLERYFKGQDFPEPNYIVKEGKLASQYQ 193 WRYMPN+AMTPHISGTTID QLRYAAGVKDML+RYFKG++FP NYIVKEG+LASQY+ Sbjct: 320 WRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEEFPVENYIVKEGELASQYK 377
>FDH_SOLTU (Q07511) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 381 Score = 106 bits (264), Expect = 2e-23 Identities = 47/58 (81%), Positives = 52/58 (89%) Frame = -1 Query: 366 WRYMPNNAMTPHISGTTIDGQLRYAAGVKDMLERYFKGQDFPEPNYIVKEGKLASQYQ 193 WRYMPN AMTPHISGTTID QLRYAAG KDML+RYFKG+DFP NYIVK+G+LA QY+ Sbjct: 324 WRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381
>FDH_ARATH (Q9S7E4) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 384 Score = 105 bits (262), Expect = 3e-23 Identities = 47/58 (81%), Positives = 51/58 (87%) Frame = -1 Query: 366 WRYMPNNAMTPHISGTTIDGQLRYAAGVKDMLERYFKGQDFPEPNYIVKEGKLASQYQ 193 WRYMPN AMTPH SGTTID QLRYAAG KDMLERYFKG+DFP NYIVK+G+LA QY+ Sbjct: 327 WRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384
>FDH_PSESR (P33160) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 400 Score = 63.5 bits (153), Expect = 1e-10 Identities = 29/54 (53%), Positives = 38/54 (70%) Frame = -1 Query: 366 WRYMPNNAMTPHISGTTIDGQLRYAAGVKDMLERYFKGQDFPEPNYIVKEGKLA 205 WR MP N MTPHISGTT+ Q RYAAG +++LE +F+G+ + IV+ G LA Sbjct: 321 WRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 374
>FDH1_YEAST (Q08911) Formate dehydrogenase 1 (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase 1) Length = 376 Score = 53.1 bits (126), Expect = 2e-07 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 6/62 (9%) Frame = -1 Query: 366 WRYMPN-----NAMTPHISGTTIDGQLRYAAGVKDMLERYF-KGQDFPEPNYIVKEGKLA 205 WR M N NAMT HISGT++D Q RYA GVK++L YF K D+ + IV+ G A Sbjct: 309 WRTMDNKDHVGNAMTVHISGTSLDAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368 Query: 204 SQ 199 ++ Sbjct: 369 TR 370
>FDH_PICAN (P33677) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 361 Score = 50.4 bits (119), Expect = 1e-06 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 6/58 (10%) Frame = -1 Query: 366 WRYMPN-----NAMTPHISGTTIDGQLRYAAGVKDMLERYFKGQ-DFPEPNYIVKEGK 211 WR M N NAMTPH SG+ ID Q+RYA G K++LE +F + D+ + I+ GK Sbjct: 294 WRSMANKYGAGNAMTPHYSGSVIDAQVRYAQGTKNILESFFTQKFDYRPQDIILLNGK 351
>FDH2_YEAST (Q08987) Formate dehydrogenase 2 (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase 2) Length = 376 Score = 50.4 bits (119), Expect = 1e-06 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 6/62 (9%) Frame = -1 Query: 366 WRYMPN-----NAMTPHISGTTIDGQLRYAAGVKDMLERYF-KGQDFPEPNYIVKEGKLA 205 WR M N NAMT HISGT++ Q RYA GVK++L YF K D+ + IV+ G A Sbjct: 309 WRTMDNKDHVGNAMTVHISGTSLHAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368 Query: 204 SQ 199 ++ Sbjct: 369 TR 370
>FDH_NEUCR (Q07103) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 375 Score = 48.9 bits (115), Expect = 3e-06 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Frame = -1 Query: 348 NAMTPHISGTTIDGQLRYAAGVKDMLERYFKGQ-DFPEPNYIVKEGKLASQ 199 NAM PH+SGT++D Q RYAAG K ++E Y G+ D+ + IV G A++ Sbjct: 307 NAMVPHMSGTSLDAQKRYAAGTKAIIESYLSGKHDYRPEDLIVYGGDYATK 357
>FDH_EMENI (Q03134) Probable formate dehydrogenase (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase) (FDH) Length = 377 Score = 45.4 bits (106), Expect = 3e-05 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Frame = -1 Query: 348 NAMTPHISGTTIDGQLRYAAGVKDMLERYFKGQ-DFPEPNYIVKEGKLASQ 199 NA PH+SGT++ Q+RYA G K +L+ YF G+ D+ + IV G A++ Sbjct: 319 NATVPHMSGTSLAAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYATK 369
>PFA4_EMENI (Q5BD15) Palmitoyltransferase pfa4 (EC 2.3.1.-) (Protein fatty| acyltransferase 4) Length = 435 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 9/36 (25%) Frame = +3 Query: 279 PSHQRRTSA----GRQWWCRRCEG-----SWHCWAC 359 PS + R A GRQ WCRRCE + HC C Sbjct: 75 PSDRERLKADRASGRQRWCRRCEAYKPPRAHHCKTC 110
>TRMU_PASMU (Q9CLA3) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 383 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = -3 Query: 283 EGHAREVLQGAGLPGAQLHCQGRQ-ARQPVPVSIHGAEAARIVLCQFRKLNKGCLAV 116 +GH L +GL +QLH RQ RQPV ++ + C+ + +N + V Sbjct: 293 QGHDNSALLSSGLIASQLHWVDRQPIRQPVRCTVKTRYRQEDIPCEIQPINDETIRV 349
>PFA4_ASPFU (Q4WC37) Palmitoyltransferase pfa4 (EC 2.3.1.-) (Protein fatty| acyltransferase 4) Length = 402 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%) Frame = +3 Query: 288 QRRTSAGRQWWCRRCEG-----SWHCWAC 359 ++ + GRQ WCRRCE + HC C Sbjct: 82 EKDCAGGRQRWCRRCEAFKPPRAHHCKTC 110
>YJDC_XENLA (Q5XH48) YjeF domain-containing protein 1| Length = 505 Score = 29.6 bits (65), Expect = 1.9 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Frame = -2 Query: 218 KASSPASTSEHPWSRSCTDR-LVPVQETK-----*RMLGRCSGHQL*MYTPK*NGTKAG 60 KAS P+STS P S+S DR V + K LG S TPK +GTK G Sbjct: 119 KASEPSSTSPQPCSKSFVDRHNEAVNQPKNFRRRHNSLGSSSSRYPNQVTPKKSGTKNG 177
>AROQ_XANAC (Q8PPZ9) 3-dehydroquinate dehydratase (EC 4.2.1.10)| (3-dehydroquinase) (Type II DHQase) Length = 148 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -3 Query: 271 REVLQGAGLPGAQLHCQGRQARQPVPVSIHGAEAARIVLCQF 146 R+ L G GLP ++H AR+P + ++ A V+C F Sbjct: 87 RDALLGVGLPFVEIHLSNPHAREPFRHHSYLSDKADGVICGF 128
>EXP21_ARATH (Q9FL81) Putative alpha-expansin 21 precursor (AtEXPA21) (At-EXP21)| (AtEx21) (Ath-ExpAlpha-1.20) Length = 256 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/46 (34%), Positives = 20/46 (43%) Frame = +2 Query: 167 CSFGSMDAHWYWLASLPSLTM*LGSGKSCPLKYLSSMSFTPAAYLS 304 C +G ++ H Y LA+ T SG SC Y S P LS Sbjct: 61 CGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLS 106
>HYDN_ECOLI (P0AAK4) Electron transport protein hydN| Length = 175 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -3 Query: 178 AEAARIVLCQFRKLNKGCLAVAVAISYKCTHQNKMEQ 68 AEA + LC R+ C+A + C +NK+EQ Sbjct: 126 AEANKCDLCNHREDGPACMAACPTHALICVDRNKLEQ 162
>HYDN_ECOL6 (P0AAK5) Electron transport protein hydN| Length = 175 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -3 Query: 178 AEAARIVLCQFRKLNKGCLAVAVAISYKCTHQNKMEQ 68 AEA + LC R+ C+A + C +NK+EQ Sbjct: 126 AEANKCDLCNHREDGPACMAACPTHALICVDRNKLEQ 162
>HYDN_ECO57 (P0AAK6) Electron transport protein hydN| Length = 175 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -3 Query: 178 AEAARIVLCQFRKLNKGCLAVAVAISYKCTHQNKMEQ 68 AEA + LC R+ C+A + C +NK+EQ Sbjct: 126 AEANKCDLCNHREDGPACMAACPTHALICVDRNKLEQ 162
>AROQ_XANCP (Q8PD27) 3-dehydroquinate dehydratase (EC 4.2.1.10)| (3-dehydroquinase) (Type II DHQase) Length = 148 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = -3 Query: 271 REVLQGAGLPGAQLHCQGRQARQPVPVSIHGAEAARIVLCQF 146 R+ L G GLP ++H R+P + ++ A V+C F Sbjct: 87 RDALLGVGLPFVEIHLSNPHTREPFRHHSYLSDKAAGVICGF 128
>HPS6_HUMAN (Q86YV9) Hermansky-Pudlak syndrome 6 protein (Ruby-eye protein| homolog) (Ru) Length = 775 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = -3 Query: 310 RPAEVRRWCEGHAREVLQGAGLPGAQLHCQGRQARQPVPVSIHGAEAARIVLC 152 RP + C G V+ A L G + C+ RQAR P G+ AA C Sbjct: 113 RPLQSTELCPGGGARVVAVAALRGRLVWCEERQARAEGP---SGSPAAAFSHC 162
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = -3 Query: 358 HAQQCHDPSHLRHHH*RPAE 299 H ++ H+P H HHH P E Sbjct: 65 HPEEHHEPHHEEHHHHHPEE 84
>SERA_YEAST (P40054) D-3-phosphoglycerate dehydrogenase 1 (EC 1.1.1.95) (3-PGDH| 1) Length = 469 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 Query: 357 MPNNAMTPHISGTTIDGQLRYAAGVKDMLERY 262 +PN +TPHI G+T + Q V L +Y Sbjct: 339 LPNIILTPHIGGSTEEAQSSIGIEVATALSKY 370
>SER33_YEAST (P40510) D-3-phosphoglycerate dehydrogenase 2 (EC 1.1.1.95) (3-PGDH| 2) Length = 469 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 Query: 357 MPNNAMTPHISGTTIDGQLRYAAGVKDMLERY 262 +PN +TPHI G+T + Q V L +Y Sbjct: 339 LPNIILTPHIGGSTEEAQSSIGIEVATALSKY 370
>E434_ADE02 (P03239) Early E4 34 kDa protein| Length = 294 Score = 27.7 bits (60), Expect = 7.2 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 8/98 (8%) Frame = -3 Query: 298 VRRWCEGHAREVLQGAGLPGAQLHCQGRQARQPVPVSIHGAEAARI-VLCQFRKLNKGCL 122 +R W +GH V+ + LHC G V + A+ + I V C R+ + L Sbjct: 189 LRLWYDGHVGSVVPAMSFGYSALHC-GILNNIVVLCCSYCADLSEIRVRCCARRTRRLML 247 Query: 121 AV-------AVAISYKCTHQNKMEQKLVALICHQLPSL 29 A+ Y C + + +Q + AL+ H P L Sbjct: 248 RAVRIIAEETTAMLYSCRTERRRQQFIRALLQHHRPIL 285
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 9/57 (15%) Frame = +3 Query: 201 GWRACLP*QCSWAPGSPAP*STSLACP---------SHQRRTSAGRQWWCRRCEGSW 344 GW A P WA G PAP CP SH+ +A RR G W Sbjct: 1193 GWWA--PPPPPWAAGPPAPRRARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGW 1247
>SERA_SCHPO (P87228) Putative D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)| (3-PGDH) Length = 466 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 351 NNAMTPHISGTTIDGQLRYAAGVKDMLERY 262 N +TPHI G+T + Q V + L RY Sbjct: 338 NIILTPHIGGSTEEAQYNIGIEVSEALTRY 367 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,685,834 Number of Sequences: 219361 Number of extensions: 1181022 Number of successful extensions: 3450 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3318 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3445 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
