ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast10g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCT1B_XENLA (Q8QG92) Dapper 1-B (xDpr) 30 1.6
2PPCK_CHLTE (Q8KAD1) Phosphoenolpyruvate carboxykinase [GTP] (EC ... 30 1.6
3FOGT1_ARATH (Q9ZQ95) Flavonol-3-O-glycoside-7-O-glucosyltransfer... 29 3.5
4HIPPO_DROME (Q8T0S6) Serine/threonine-protein kinase hippo (EC 2... 29 3.5
5COGT3_ARATH (Q9ZQ94) Cytokinin-O-glucosyltransferase 3 (EC 2.4.1... 28 4.6
6GPDA_LEGPL (Q5WUE0) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 28 4.6
7GPDA_LEGPH (Q5ZT56) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 28 4.6
8COBD_PYRFU (Q8U403) Probable cobalamin biosynthesis protein cobD 28 6.0
9RFNG_NOTVI (Q9YHB3) Beta-1,3-N-acetylglucosaminyltransferase rad... 28 7.9

>DCT1B_XENLA (Q8QG92) Dapper 1-B (xDpr)|
          Length = 824

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 217 RWAADGRVDGSPELRRGWRRHPGQLIGVFGQL*TFFLDDLCYDDSHDAMESSC 59
           RW +   +     LRR  RR  G+++GV+ Q+   +     Y  S     + C
Sbjct: 667 RWKSSAEISYEEALRRARRRAQGEMVGVYAQVPFPYSSPYAYIASDSEYSAEC 719



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>PPCK_CHLTE (Q8KAD1) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 621

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 70  PWRHGCRRSKDHPKRKFKAAQTHRSAGLDV-FSNLDGAPAS 189
           PW  GC R   HP  +F  A  H+   +D  + N DG P S
Sbjct: 373 PWVPGCERPAAHPNARF-TAPAHQCPVIDENWENPDGVPIS 412



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>FOGT1_ARATH (Q9ZQ95) Flavonol-3-O-glycoside-7-O-glucosyltransferase 1 (EC|
           2.4.1.-)
          Length = 495

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = -1

Query: 285 KKAKDLGVKARRAVEKVGSSYDDVGRLM-DVLTARRSS 175
           ++AK+LG  A +AVE+ GSS+ ++  L+ D++   +S+
Sbjct: 457 RRAKELGESAHKAVEEGGSSHSNITFLLQDIMQLAQSN 494



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>HIPPO_DROME (Q8T0S6) Serine/threonine-protein kinase hippo (EC 2.7.11.1)|
          Length = 669

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 41  KEQRRSTTRFHGVMAVVVAKIIQKESSKLPKHTDQLAWMSSP 166
           +EQ+R+   F GV+A   AK +  + + + +H    A+M  P
Sbjct: 313 REQQRANRSFGGVLAASQAKSLATQENGMQQHITDNAFMEDP 354



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>COGT3_ARATH (Q9ZQ94) Cytokinin-O-glucosyltransferase 3 (EC 2.4.1.-)|
           (UDP-glycosyltransferase 73C5)
           (Deoxynivalenol-glucosyl-transferase) (Zeatin
           O-glucosyltransferase 3) (AtZOG3)
          Length = 495

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 285 KKAKDLGVKARRAVEKVGSSYDDVGRLM 202
           ++AK+LG  A +AVE+ GSS+ ++  L+
Sbjct: 457 RRAKELGDSAHKAVEEGGSSHSNISFLL 484



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>GPDA_LEGPL (Q5WUE0) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 329

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +2

Query: 119 SKLPKHTDQLAWMS---SPTSTELRRAVNTS---ISRPTSSYEDPTFSTALLAFTPRSL 277
           +K+PK T  LAW++    P S EL   +  S   +  P +    P+F+  +  F P +L
Sbjct: 91  NKIPKPTQGLAWLTKGVDPASHELLSQLVASRFGVDFPIAVISGPSFAKEVARFLPTAL 149



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>GPDA_LEGPH (Q5ZT56) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 329

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +2

Query: 119 SKLPKHTDQLAWMS---SPTSTELRRAVNTS---ISRPTSSYEDPTFSTALLAFTPRSL 277
           +K+PK T  LAW++    P S EL   +  S   +  P +    P+F+  +  F P +L
Sbjct: 91  NKIPKPTQGLAWLTKGVDPASHELLSQLVASRFGVDFPIAVISGPSFAKEVARFLPTAL 149



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>COBD_PYRFU (Q8U403) Probable cobalamin biosynthesis protein cobD|
          Length = 285

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +2

Query: 86  VVVAKIIQKESSKLPKHTDQLAWMSSPTSTELRRAVNTSISRPTSSYEDPTFSTALL 256
           ++++  + K S  +    D +    +P   E RRAV+  +SR T S ++P  ++A +
Sbjct: 78  LILSIYLLKSSFAIRSLHDHVKRTITPDLEEKRRAVSMIVSRDTKSLDEPHLNSAAI 134



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>RFNG_NOTVI (Q9YHB3) Beta-1,3-N-acetylglucosaminyltransferase radical fringe|
           (EC 2.4.1.222) (nrFng) (O-fucosylpeptide
           3-beta-N-acetylglucosaminyltransferase)
          Length = 396

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 104 IQKESSKLPKHTDQLAWMSSPTSTELRRAVNTSISRPTSSYEDPT 238
           I+    KLP HT  +     P + E  RA       P   +E PT
Sbjct: 61  IEHAQQKLPTHTTDITHFEDPGNVEDWRAYILGRENPDEKHEGPT 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,978,680
Number of Sequences: 219361
Number of extensions: 618672
Number of successful extensions: 2305
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2305
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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