| Clone Name | rbast10f11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1289 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ggcgggtgatacaaggcggcatcggttaatcaa 173 |||||||||||||||||||| || || |||||| Sbjct: 1245 ggcgggtgatacaaggcggcctctgtcaatcaa 1213
>ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.30 mRNA Length = 1417 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ggcgggtgatacaaggcggcatcggttaatcaa 173 |||||||||||||||||||| || || |||||| Sbjct: 1251 ggcgggtgatacaaggcggcctctgtcaatcaa 1219
>gb|AF247162.1| Oryza sativa alpha-expansin OsEXPA5 mRNA, complete cds Length = 1412 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ggcgggtgatacaaggcggcatcggttaatcaa 173 |||||||||||||||||||| || || |||||| Sbjct: 1222 ggcgggtgatacaaggcggcctctgtcaatcaa 1190
>gb|AF394546.1| Oryza sativa alpha-expansin OsEXPA5 (EXPA5) gene, complete cds Length = 6774 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ggcgggtgatacaaggcggcatcggttaatcaa 173 |||||||||||||||||||| || || |||||| Sbjct: 5613 ggcgggtgatacaaggcggcctctgtcaatcaa 5581
>dbj|AK125241.1| Homo sapiens cDNA FLJ43251 fis, clone HEART2006131, weakly similar to Mus musculus 2-hydroxyphytanoyl-CoA lyase (Hpcl-pending) Length = 1776 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 caaaccagcctttaccaccgc 191 ||||||||||||||||||||| Sbjct: 1568 caaaccagcctttaccaccgc 1548
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ggcgggtgatacaaggcggcatcggttaatcaa 173 |||||||||||||||||||| || || |||||| Sbjct: 31240499 ggcgggtgatacaaggcggcctctgtcaatcaa 31240467
>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1734_E02 Length = 168566 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ggcgggtgatacaaggcggcatcggttaatcaa 173 |||||||||||||||||||| || || |||||| Sbjct: 120342 ggcgggtgatacaaggcggcctctgtcaatcaa 120310
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1118_G04 Length = 134464 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ggcgggtgatacaaggcggcatcggttaatcaa 173 |||||||||||||||||||| || || |||||| Sbjct: 10367 ggcgggtgatacaaggcggcctctgtcaatcaa 10335
>dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F08, full insert sequence Length = 1290 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ggcgggtgatacaaggcggcatcggttaatcaa 173 |||||||||||||||||||| || || |||||| Sbjct: 1245 ggcgggtgatacaaggcggcctctgtcaatcaa 1213
>dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E11, full insert sequence Length = 1416 Score = 42.1 bits (21), Expect = 0.97 Identities = 30/33 (90%) Strand = Plus / Minus Query: 141 ggcgggtgatacaaggcggcatcggttaatcaa 173 |||||||||||||||||||| || || |||||| Sbjct: 1250 ggcgggtgatacaaggcggcctctgtcaatcaa 1218
>emb|AL391065.6| Human DNA sequence from clone RP11-108M21 on chromosome 1 Contains part of a novel gene, complete sequence Length = 170639 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 atccaaaagccagaggctca 24 |||||||||||||||||||| Sbjct: 56893 atccaaaagccagaggctca 56874
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cccatgataataccaggcct 279 |||||||||||||||||||| Sbjct: 1670873 cccatgataataccaggcct 1670892 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,770,766 Number of Sequences: 3902068 Number of extensions: 1770766 Number of successful extensions: 48020 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47991 Number of HSP's gapped (non-prelim): 29 length of query: 292 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 270 effective length of database: 17,147,199,772 effective search space: 4629743938440 effective search space used: 4629743938440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)