ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast10f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.97
2ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 0.97
3gb|AF247162.1| Oryza sativa alpha-expansin OsEXPA5 mRNA, complet... 42 0.97
4gb|AF394546.1| Oryza sativa alpha-expansin OsEXPA5 (EXPA5) gene,... 42 0.97
5dbj|AK125241.1| Homo sapiens cDNA FLJ43251 fis, clone HEART20061... 42 0.97
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
7dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
8dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.97
9dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.97
10dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.97
11emb|AL391065.6| Human DNA sequence from clone RP11-108M21 on chr... 40 3.8
12gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 3.8

>ref|XM_467754.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1289

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 141  ggcgggtgatacaaggcggcatcggttaatcaa 173
            |||||||||||||||||||| || || ||||||
Sbjct: 1245 ggcgggtgatacaaggcggcctctgtcaatcaa 1213



to top

>ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.30 mRNA
          Length = 1417

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 141  ggcgggtgatacaaggcggcatcggttaatcaa 173
            |||||||||||||||||||| || || ||||||
Sbjct: 1251 ggcgggtgatacaaggcggcctctgtcaatcaa 1219



to top

>gb|AF247162.1| Oryza sativa alpha-expansin OsEXPA5 mRNA, complete cds
          Length = 1412

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 141  ggcgggtgatacaaggcggcatcggttaatcaa 173
            |||||||||||||||||||| || || ||||||
Sbjct: 1222 ggcgggtgatacaaggcggcctctgtcaatcaa 1190



to top

>gb|AF394546.1| Oryza sativa alpha-expansin OsEXPA5 (EXPA5) gene, complete cds
          Length = 6774

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 141  ggcgggtgatacaaggcggcatcggttaatcaa 173
            |||||||||||||||||||| || || ||||||
Sbjct: 5613 ggcgggtgatacaaggcggcctctgtcaatcaa 5581



to top

>dbj|AK125241.1| Homo sapiens cDNA FLJ43251 fis, clone HEART2006131, weakly  similar
            to Mus musculus 2-hydroxyphytanoyl-CoA lyase
            (Hpcl-pending)
          Length = 1776

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 171  caaaccagcctttaccaccgc 191
            |||||||||||||||||||||
Sbjct: 1568 caaaccagcctttaccaccgc 1548



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 141      ggcgggtgatacaaggcggcatcggttaatcaa 173
                |||||||||||||||||||| || || ||||||
Sbjct: 31240499 ggcgggtgatacaaggcggcctctgtcaatcaa 31240467



to top

>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1734_E02
          Length = 168566

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 141    ggcgggtgatacaaggcggcatcggttaatcaa 173
              |||||||||||||||||||| || || ||||||
Sbjct: 120342 ggcgggtgatacaaggcggcctctgtcaatcaa 120310



to top

>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1118_G04
          Length = 134464

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 141   ggcgggtgatacaaggcggcatcggttaatcaa 173
             |||||||||||||||||||| || || ||||||
Sbjct: 10367 ggcgggtgatacaaggcggcctctgtcaatcaa 10335



to top

>dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F08, full
            insert sequence
          Length = 1290

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 141  ggcgggtgatacaaggcggcatcggttaatcaa 173
            |||||||||||||||||||| || || ||||||
Sbjct: 1245 ggcgggtgatacaaggcggcctctgtcaatcaa 1213



to top

>dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E11, full
            insert sequence
          Length = 1416

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 141  ggcgggtgatacaaggcggcatcggttaatcaa 173
            |||||||||||||||||||| || || ||||||
Sbjct: 1250 ggcgggtgatacaaggcggcctctgtcaatcaa 1218



to top

>emb|AL391065.6| Human DNA sequence from clone RP11-108M21 on chromosome 1 Contains part
             of a novel gene, complete sequence
          Length = 170639

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     atccaaaagccagaggctca 24
             ||||||||||||||||||||
Sbjct: 56893 atccaaaagccagaggctca 56874



to top

>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 260     cccatgataataccaggcct 279
               ||||||||||||||||||||
Sbjct: 1670873 cccatgataataccaggcct 1670892


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,770,766
Number of Sequences: 3902068
Number of extensions: 1770766
Number of successful extensions: 48020
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47991
Number of HSP's gapped (non-prelim): 29
length of query: 292
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 270
effective length of database: 17,147,199,772
effective search space: 4629743938440
effective search space used: 4629743938440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top