ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast10d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC161416.2| Mus musculus BAC clone RP23-306A2 from chromosome... 42 0.70
2ref|XM_505672.1| Yarrowia lipolytica CLIB122, YALI0F20636g predi... 42 0.70
3gb|AC132387.4| Mus musculus BAC clone RP23-440M14 from 1, comple... 42 0.70
4emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 42 0.70
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
6dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8

>gb|AC161416.2| Mus musculus BAC clone RP23-306A2 from chromosome 1, complete sequence
          Length = 196764

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    acaacattttattatagcagc 35
             |||||||||||||||||||||
Sbjct: 19841 acaacattttattatagcagc 19821



to top

>ref|XM_505672.1| Yarrowia lipolytica CLIB122, YALI0F20636g predicted mRNA
          Length = 5538

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 132 aactgctcggcttcgaagcag 152
           |||||||||||||||||||||
Sbjct: 963 aactgctcggcttcgaagcag 943



to top

>gb|AC132387.4| Mus musculus BAC clone RP23-440M14 from 1, complete sequence
          Length = 193449

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    acaacattttattatagcagc 35
             |||||||||||||||||||||
Sbjct: 46821 acaacattttattatagcagc 46841



to top

>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 132     aactgctcggcttcgaagcag 152
               |||||||||||||||||||||
Sbjct: 2751621 aactgctcggcttcgaagcag 2751641



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 8        atccaacacaacattttatt 27
                ||||||||||||||||||||
Sbjct: 24017700 atccaacacaacattttatt 24017719



to top

>dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0481F05
          Length = 139739

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     atccaacacaacattttatt 27
             ||||||||||||||||||||
Sbjct: 45100 atccaacacaacattttatt 45119


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,780,065
Number of Sequences: 3902068
Number of extensions: 1780065
Number of successful extensions: 135347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135273
Number of HSP's gapped (non-prelim): 74
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top